Wall clock time and date at job start Tue Mar 31 2020 19:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46985 * 2 1 4 4 C 1.50696 * 115.54778 * 294.30900 * 3 2 1 5 5 O 1.21286 * 119.99594 * 116.05088 * 4 3 2 6 6 N 1.34776 * 120.00234 * 296.05334 * 4 3 2 7 7 C 1.47154 * 120.68318 * 180.53071 * 6 4 3 8 8 C 1.53890 * 108.08995 * 132.63182 * 7 6 4 9 9 H 1.08999 * 112.12246 * 182.02843 * 8 7 6 10 10 C 1.54543 * 107.81162 * 306.66750 * 8 7 6 11 11 C 1.55968 * 105.08972 * 88.88468 * 10 8 7 12 12 C 1.54547 * 104.18088 * 0.03928 * 11 10 8 13 13 H 1.09004 * 112.20760 * 146.87035 * 12 11 10 14 14 C 1.47148 * 120.68090 * 0.55018 * 6 4 3 15 15 N 1.48726 * 104.88386 * 24.77802 * 12 11 10 16 16 C 1.46903 * 111.00122 * 78.10848 * 15 12 11 17 17 C 1.50693 * 109.46893 * 171.56575 * 16 15 12 18 18 O 1.21291 * 120.00776 * 353.62465 * 17 16 15 19 19 N 1.34788 * 119.99882 * 173.62357 * 17 16 15 20 20 C 1.37096 * 119.99846 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00206 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99476 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00231 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99625 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47408 * 89.99963 * 24 22 20 26 26 H 1.48498 * 109.47138 * 209.99836 * 24 22 20 27 27 H 1.48507 * 109.47460 * 329.99721 * 24 22 20 28 28 C 1.52993 * 117.49803 * 79.97853 * 3 2 1 29 29 C 1.52997 * 117.49666 * 148.63964 * 3 2 1 30 30 H 1.09001 * 109.47533 * 295.86974 * 1 2 3 31 31 H 1.09000 * 109.47296 * 55.86356 * 1 2 3 32 32 H 1.08997 * 109.47395 * 175.86508 * 1 2 3 33 33 H 1.08994 * 109.47318 * 240.00222 * 2 1 3 34 34 H 1.09000 * 109.46956 * 119.99627 * 2 1 3 35 35 H 1.08996 * 109.74317 * 252.29542 * 7 6 4 36 36 H 1.09005 * 109.74290 * 12.97235 * 7 6 4 37 37 H 1.08994 * 110.35048 * 207.82460 * 10 8 7 38 38 H 1.09002 * 110.34328 * 330.08798 * 10 8 7 39 39 H 1.08996 * 110.89625 * 241.32980 * 11 10 8 40 40 H 1.09006 * 110.52392 * 118.55950 * 11 10 8 41 41 H 1.08993 * 109.75241 * 346.97560 * 14 6 4 42 42 H 1.08999 * 109.75138 * 107.71370 * 14 6 4 43 43 H 1.09004 * 109.46883 * 291.56443 * 16 15 12 44 44 H 1.08998 * 109.47104 * 51.56607 * 16 15 12 45 45 H 0.97000 * 119.99693 * 0.02562 * 19 17 16 46 46 H 0.96997 * 120.00354 * 179.97438 * 23 22 20 47 47 H 1.08997 * 117.50229 * 214.99639 * 28 3 2 48 48 H 1.08996 * 117.50286 * 0.02961 * 28 3 2 49 49 H 1.08998 * 117.50152 * 359.97438 * 29 3 2 50 50 H 1.09007 * 117.49621 * 144.96954 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7289 2.2419 -1.2391 5 8 1.0088 3.2153 -1.1679 6 7 2.2508 1.8751 -2.4263 7 6 1.9663 2.6514 -3.6436 8 6 3.2970 2.8938 -4.3776 9 1 3.1662 3.4970 -5.2761 10 6 4.2832 3.5284 -3.3712 11 6 4.9937 2.3223 -2.6834 12 6 4.3605 1.0798 -3.3497 13 1 5.0676 0.2551 -3.4394 14 6 3.1164 0.6899 -2.5320 15 7 3.8832 1.5583 -4.6745 16 6 4.9969 1.6723 -5.6256 17 6 4.4544 1.9566 -7.0025 18 8 3.2575 1.9402 -7.1982 19 7 5.2993 2.2291 -8.0167 20 6 4.8058 2.4873 -9.2694 21 1 3.7402 2.4718 -9.4438 22 6 5.6770 2.7677 -10.3151 23 7 6.9737 2.7860 -10.1030 24 14 5.0046 3.1201 -12.0218 25 1 4.7577 4.5775 -12.1655 26 1 5.9903 2.6821 -13.0424 27 1 3.7310 2.3810 -12.2145 28 6 2.0528 2.1873 1.3364 29 6 3.3680 1.7223 0.7063 30 1 -0.3634 0.4484 0.9247 31 1 -0.3634 0.5767 -0.8506 32 1 -0.3634 -1.0249 -0.0741 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.2874 2.0918 -4.2870 36 1 1.5150 3.6064 -3.3743 37 1 5.0111 4.1490 -3.8938 38 1 3.7424 4.1187 -2.6315 39 1 4.8001 2.3172 -1.6108 40 1 6.0663 2.3502 -2.8758 41 1 3.4174 0.3636 -1.5366 42 1 2.5806 -0.1137 -3.0374 43 1 5.6546 2.4857 -5.3191 44 1 5.5579 0.7379 -5.6419 45 1 6.2566 2.2419 -7.8603 46 1 7.5818 2.9814 -10.8330 47 1 1.8363 3.2554 1.3195 48 1 1.6984 1.6495 2.2157 49 1 3.8782 0.8788 1.1713 50 1 4.0170 2.4843 0.2744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267423993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:19 Heat of formation + Delta-G solvation = -28.142411 kcal Electronic energy + Delta-G solvation = -30696.916962 eV Core-core repulsion = 26725.075976 eV Total energy + Delta-G solvation = -3971.840986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25346 -39.53209 -37.83840 -36.98774 -34.63081 -33.85219 -32.21844 -31.57211 -31.31933 -30.90067 -28.03197 -26.00131 -25.30970 -24.21396 -23.91267 -22.80514 -22.29242 -20.65067 -19.74547 -19.21628 -18.40824 -17.82648 -16.90895 -16.29235 -16.20336 -15.72239 -15.45337 -14.98460 -14.66488 -14.58130 -14.44873 -14.14908 -13.85719 -13.71151 -13.54785 -13.46215 -13.29784 -12.69698 -12.51200 -12.43025 -12.28137 -11.91713 -11.85923 -11.77899 -11.62681 -11.46249 -11.34253 -11.15570 -10.98631 -10.86325 -10.83611 -10.65909 -10.46501 -10.39620 -10.26511 -10.21736 -9.68879 -9.49253 -8.83545 -8.40654 -8.08463 -7.95927 -6.41881 -3.82498 2.51116 2.87939 3.17578 3.26323 3.32162 3.42728 3.87162 3.91392 4.18079 4.22073 4.33879 4.49006 4.61329 4.64542 4.69282 4.86637 4.96572 5.04115 5.10310 5.15621 5.18449 5.20731 5.24860 5.29660 5.32031 5.48694 5.51825 5.53595 5.59292 5.66301 5.70078 5.76145 5.79359 5.81715 5.84620 5.85984 5.87811 5.92201 5.99595 6.02510 6.15939 6.21578 6.28270 6.53644 6.98421 7.14003 7.42998 7.55091 8.06320 8.14936 8.61961 9.18455 9.54811 10.06765 10.75975 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002591 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.458961 B =10805.564774 C =11039.175574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.155 4.155 4 C 0.552 3.448 5 O -0.544 6.544 6 N -0.596 5.596 7 C 0.128 3.872 8 C 0.060 3.940 9 H 0.113 0.887 10 C -0.148 4.148 11 C -0.145 4.145 12 C 0.043 3.957 13 H 0.104 0.896 14 C 0.121 3.879 15 N -0.474 5.474 16 C 0.035 3.965 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.144 4.144 29 C -0.162 4.162 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -5.138 22.599 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.158 4.158 4 C 0.339 3.661 5 O -0.422 6.422 6 N -0.328 5.328 7 C 0.005 3.995 8 C -0.050 4.050 9 H 0.131 0.869 10 C -0.187 4.187 11 C -0.184 4.184 12 C -0.067 4.067 13 H 0.122 0.878 14 C -0.002 4.002 15 N -0.196 5.196 16 C -0.096 4.096 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.181 4.181 29 C -0.199 4.199 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.236 -4.980 22.070 23.018 hybrid contribution 1.207 0.712 -0.595 1.522 sum -3.029 -4.268 21.475 22.104 Atomic orbital electron populations 1.21712 0.94966 1.01647 1.02404 1.21193 0.96645 0.91548 1.02938 1.21464 1.03781 0.97550 0.93022 1.19453 0.79463 0.83899 0.83269 1.90682 1.37672 1.28129 1.85685 1.48035 1.48699 1.28480 1.07616 1.21832 0.96581 0.96785 0.84255 1.23404 0.93799 0.90282 0.97481 0.86869 1.23155 0.98846 0.98015 0.98696 1.23165 0.99807 0.95164 1.00270 1.23507 0.95547 0.97821 0.89803 0.87840 1.22057 0.90549 0.87547 1.00067 1.65130 1.26594 1.22077 1.05845 1.21984 0.92880 1.01696 0.93060 1.19717 0.87421 0.84371 0.85551 1.90528 1.15187 1.56393 1.83820 1.41880 1.08677 1.61580 1.08181 1.19685 0.94531 1.44144 0.84333 0.87951 1.25247 0.95036 0.97516 1.00158 1.69606 1.01668 1.49522 1.33650 0.85876 0.78586 0.78695 0.81251 1.20445 1.20949 1.19408 1.22976 0.99660 1.01284 0.94175 1.23153 0.90187 1.03764 1.02800 0.92510 0.92586 0.92381 0.90616 0.90953 0.90227 0.89241 0.91558 0.91353 0.91250 0.91544 0.89249 0.90467 0.93085 0.89340 0.77581 0.91913 0.87958 0.88044 0.87789 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.84 37.16 0.37 -0.91 16 2 C -0.09 -0.65 5.39 -26.73 -0.14 -0.80 16 3 C -0.16 -1.44 0.78 -155.66 -0.12 -1.56 16 4 C 0.55 7.12 6.33 -10.99 -0.07 7.05 16 5 O -0.54 -9.06 16.12 5.55 0.09 -8.97 16 6 N -0.60 -7.41 2.25 -171.54 -0.39 -7.79 16 7 C 0.13 1.87 5.89 -3.22 -0.02 1.85 16 8 C 0.06 0.92 3.25 -65.36 -0.21 0.70 16 9 H 0.11 2.07 7.06 -51.93 -0.37 1.70 16 10 C -0.15 -1.92 5.51 -24.33 -0.13 -2.05 16 11 C -0.14 -1.55 5.81 -24.33 -0.14 -1.70 16 12 C 0.04 0.49 3.62 -65.42 -0.24 0.25 16 13 H 0.10 1.01 8.00 -51.93 -0.42 0.59 16 14 C 0.12 1.25 4.50 -3.22 -0.01 1.23 16 15 N -0.47 -7.31 4.55 -214.11 -0.97 -8.29 16 16 C 0.04 0.60 5.16 -4.98 -0.03 0.57 16 17 C 0.44 10.18 7.29 -10.98 -0.08 10.09 16 18 O -0.58 -15.20 15.13 5.55 0.08 -15.12 16 19 N -0.57 -14.08 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.14 -1.21 9.77 -26.70 -0.26 -1.47 16 29 C -0.16 -1.19 9.24 -26.69 -0.25 -1.44 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.56 5.83 -51.93 -0.30 0.25 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.36 7.11 -51.93 -0.37 0.99 16 37 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 38 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 39 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.71 4.98 -51.93 -0.26 0.45 16 42 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 43 H 0.05 0.80 6.98 -51.93 -0.36 0.44 16 44 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 45 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.10 1.02 7.97 -51.93 -0.41 0.60 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.10 0.78 6.87 -51.92 -0.36 0.43 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -32.25 385.88 -9.33 -41.58 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.02 Total: 10.62 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.58 Total: 3.99 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.69 Total: -53.91 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.25 -9.33 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267423993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.440 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds