Wall clock time and date at job start Tue Mar 31 2020 19:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46985 * 2 1 4 4 C 1.50696 * 115.54778 * 294.30900 * 3 2 1 5 5 O 1.21286 * 119.99594 * 116.05088 * 4 3 2 6 6 N 1.34776 * 120.00234 * 296.05334 * 4 3 2 7 7 C 1.47154 * 120.68318 * 180.53071 * 6 4 3 8 8 C 1.53890 * 108.08995 * 132.63182 * 7 6 4 9 9 H 1.08999 * 112.12246 * 182.02843 * 8 7 6 10 10 C 1.54543 * 107.81162 * 306.66750 * 8 7 6 11 11 C 1.55968 * 105.08972 * 88.88468 * 10 8 7 12 12 C 1.54547 * 104.18088 * 0.03928 * 11 10 8 13 13 H 1.09004 * 112.20760 * 146.87035 * 12 11 10 14 14 C 1.47148 * 120.68090 * 0.55018 * 6 4 3 15 15 N 1.48726 * 104.88386 * 24.77802 * 12 11 10 16 16 C 1.46903 * 111.00122 * 78.10848 * 15 12 11 17 17 C 1.50693 * 109.46893 * 171.56575 * 16 15 12 18 18 O 1.21291 * 120.00776 * 353.62465 * 17 16 15 19 19 N 1.34788 * 119.99882 * 173.62357 * 17 16 15 20 20 C 1.37096 * 119.99846 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00206 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99476 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00231 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99625 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47408 * 89.99963 * 24 22 20 26 26 H 1.48498 * 109.47138 * 209.99836 * 24 22 20 27 27 H 1.48507 * 109.47460 * 329.99721 * 24 22 20 28 28 C 1.52993 * 117.49803 * 79.97853 * 3 2 1 29 29 C 1.52997 * 117.49666 * 148.63964 * 3 2 1 30 30 H 1.09001 * 109.47533 * 295.86974 * 1 2 3 31 31 H 1.09000 * 109.47296 * 55.86356 * 1 2 3 32 32 H 1.08997 * 109.47395 * 175.86508 * 1 2 3 33 33 H 1.08994 * 109.47318 * 240.00222 * 2 1 3 34 34 H 1.09000 * 109.46956 * 119.99627 * 2 1 3 35 35 H 1.08996 * 109.74317 * 252.29542 * 7 6 4 36 36 H 1.09005 * 109.74290 * 12.97235 * 7 6 4 37 37 H 1.08994 * 110.35048 * 207.82460 * 10 8 7 38 38 H 1.09002 * 110.34328 * 330.08798 * 10 8 7 39 39 H 1.08996 * 110.89625 * 241.32980 * 11 10 8 40 40 H 1.09006 * 110.52392 * 118.55950 * 11 10 8 41 41 H 1.08993 * 109.75241 * 346.97560 * 14 6 4 42 42 H 1.08999 * 109.75138 * 107.71370 * 14 6 4 43 43 H 1.09004 * 109.46883 * 291.56443 * 16 15 12 44 44 H 1.08998 * 109.47104 * 51.56607 * 16 15 12 45 45 H 0.97000 * 119.99693 * 0.02562 * 19 17 16 46 46 H 0.96997 * 120.00354 * 179.97438 * 23 22 20 47 47 H 1.08997 * 117.50229 * 214.99639 * 28 3 2 48 48 H 1.08996 * 117.50286 * 0.02961 * 28 3 2 49 49 H 1.08998 * 117.50152 * 359.97438 * 29 3 2 50 50 H 1.09007 * 117.49621 * 144.96954 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7289 2.2419 -1.2391 5 8 1.0088 3.2153 -1.1679 6 7 2.2508 1.8751 -2.4263 7 6 1.9663 2.6514 -3.6436 8 6 3.2970 2.8938 -4.3776 9 1 3.1662 3.4970 -5.2761 10 6 4.2832 3.5284 -3.3712 11 6 4.9937 2.3223 -2.6834 12 6 4.3605 1.0798 -3.3497 13 1 5.0676 0.2551 -3.4394 14 6 3.1164 0.6899 -2.5320 15 7 3.8832 1.5583 -4.6745 16 6 4.9969 1.6723 -5.6256 17 6 4.4544 1.9566 -7.0025 18 8 3.2575 1.9402 -7.1982 19 7 5.2993 2.2291 -8.0167 20 6 4.8058 2.4873 -9.2694 21 1 3.7402 2.4718 -9.4438 22 6 5.6770 2.7677 -10.3151 23 7 6.9737 2.7860 -10.1030 24 14 5.0046 3.1201 -12.0218 25 1 4.7577 4.5775 -12.1655 26 1 5.9903 2.6821 -13.0424 27 1 3.7310 2.3810 -12.2145 28 6 2.0528 2.1873 1.3364 29 6 3.3680 1.7223 0.7063 30 1 -0.3634 0.4484 0.9247 31 1 -0.3634 0.5767 -0.8506 32 1 -0.3634 -1.0249 -0.0741 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.2874 2.0918 -4.2870 36 1 1.5150 3.6064 -3.3743 37 1 5.0111 4.1490 -3.8938 38 1 3.7424 4.1187 -2.6315 39 1 4.8001 2.3172 -1.6108 40 1 6.0663 2.3502 -2.8758 41 1 3.4174 0.3636 -1.5366 42 1 2.5806 -0.1137 -3.0374 43 1 5.6546 2.4857 -5.3191 44 1 5.5579 0.7379 -5.6419 45 1 6.2566 2.2419 -7.8603 46 1 7.5818 2.9814 -10.8330 47 1 1.8363 3.2554 1.3195 48 1 1.6984 1.6495 2.2157 49 1 3.8782 0.8788 1.1713 50 1 4.0170 2.4843 0.2744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267423993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:18 Heat of formation + Delta-G solvation = -50.020489 kcal Electronic energy + Delta-G solvation = -30697.865667 eV Core-core repulsion = 26725.075976 eV Total energy + Delta-G solvation = -3972.789691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28757 -40.63662 -39.55063 -37.86613 -36.04377 -35.57454 -33.28434 -32.88551 -32.56556 -32.17319 -29.23298 -27.50298 -26.32788 -25.60150 -24.92910 -23.48528 -23.11525 -21.69944 -21.09236 -20.58787 -19.92095 -19.33881 -17.87463 -17.75776 -17.23276 -16.96834 -16.48314 -16.34667 -16.17257 -15.80331 -15.56619 -15.44486 -15.08645 -14.89237 -14.65604 -14.62202 -14.15302 -14.00575 -13.55570 -13.54571 -13.46560 -13.37393 -13.20890 -12.88878 -12.59552 -12.53811 -12.41428 -12.36421 -12.16939 -12.13391 -12.05935 -11.99993 -11.84155 -11.48110 -11.45727 -11.30981 -10.92771 -10.66670 -10.33221 -9.99182 -9.81146 -9.34614 -8.46107 -5.93996 1.36897 1.40622 1.52912 1.54588 1.90286 2.08802 2.28230 2.71358 2.77509 3.20984 3.29677 3.42539 3.63227 3.67912 3.76792 3.88152 3.89690 3.95223 4.01483 4.17939 4.31628 4.33835 4.35726 4.42866 4.49805 4.56214 4.56465 4.61826 4.63584 4.68598 4.72281 4.77049 4.80477 4.85608 4.92584 5.00768 5.04774 5.08639 5.13330 5.20002 5.21446 5.26885 5.37255 5.41436 5.45227 5.79750 5.89967 6.09140 6.45039 6.62557 7.14215 7.14902 7.59220 8.15791 8.71429 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002591 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.458961 B =10805.564774 C =11039.175574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.166 4.166 4 C 0.547 3.453 5 O -0.593 6.593 6 N -0.593 5.593 7 C 0.135 3.865 8 C 0.060 3.940 9 H 0.071 0.929 10 C -0.142 4.142 11 C -0.135 4.135 12 C 0.045 3.955 13 H 0.135 0.865 14 C 0.120 3.880 15 N -0.495 5.495 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.989 3.011 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.150 4.150 29 C -0.138 4.138 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.139 0.861 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -7.217 24.954 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.170 4.170 4 C 0.337 3.663 5 O -0.474 6.474 6 N -0.324 5.324 7 C 0.012 3.988 8 C -0.050 4.050 9 H 0.090 0.910 10 C -0.182 4.182 11 C -0.173 4.173 12 C -0.064 4.064 13 H 0.152 0.848 14 C -0.002 4.002 15 N -0.217 5.217 16 C -0.080 4.080 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.813 3.187 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.187 4.187 29 C -0.175 4.175 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.143 0.857 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.135 0.865 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.142 0.858 49 H 0.157 0.843 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.003 -7.083 24.447 25.531 hybrid contribution 0.425 1.389 -1.295 1.946 sum -1.578 -5.695 23.152 23.894 Atomic orbital electron populations 1.21720 0.96248 1.01886 1.00955 1.21241 0.95495 0.90399 1.04677 1.21448 1.06278 0.98004 0.91222 1.20224 0.78341 0.83504 0.84276 1.90655 1.39750 1.30501 1.86447 1.48074 1.48906 1.28748 1.06657 1.21494 0.95945 0.96199 0.85171 1.23182 0.94815 0.90496 0.96506 0.91029 1.23066 0.98158 0.99009 0.97917 1.23141 1.00245 0.93039 1.00924 1.23724 0.96508 0.98847 0.87292 0.84755 1.22293 0.89714 0.86298 1.01879 1.65082 1.26679 1.21895 1.08075 1.21826 0.93245 1.03518 0.89443 1.20842 0.86760 0.82063 0.87391 1.90502 1.17208 1.57545 1.84972 1.41942 1.09051 1.62402 1.08036 1.19606 0.93696 1.46342 0.86285 0.90599 1.25973 0.95290 0.96764 1.03186 1.69660 1.02280 1.49423 1.34827 0.84987 0.77963 0.78575 0.77184 1.19846 1.19437 1.19906 1.23037 1.01042 1.00179 0.94460 1.23304 0.89106 1.04301 1.00781 0.92418 0.95913 0.90968 0.90128 0.87763 0.92534 0.90799 0.92018 0.92083 0.89398 0.89901 0.85658 0.90711 0.91428 0.86527 0.77067 0.91365 0.90410 0.85787 0.84329 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.84 71.98 0.71 -1.63 16 2 C -0.08 -0.95 5.39 30.60 0.16 -0.78 16 3 C -0.17 -2.67 0.78 -52.93 -0.04 -2.71 16 4 C 0.55 14.00 6.33 87.66 0.56 14.55 16 5 O -0.59 -20.72 16.12 -3.05 -0.05 -20.77 16 6 N -0.59 -14.55 2.25 -815.02 -1.83 -16.38 16 7 C 0.14 4.26 5.89 86.56 0.51 4.77 16 8 C 0.06 1.91 3.25 45.36 0.15 2.05 16 9 H 0.07 2.86 7.06 -2.39 -0.02 2.84 16 10 C -0.14 -3.62 5.51 32.15 0.18 -3.44 16 11 C -0.13 -2.43 5.81 32.15 0.19 -2.24 16 12 C 0.04 0.87 3.62 45.39 0.16 1.03 16 13 H 0.13 1.88 8.00 -2.38 -0.02 1.86 16 14 C 0.12 2.14 4.50 86.56 0.39 2.53 16 15 N -0.49 -14.87 4.55 -831.33 -3.78 -18.65 16 16 C 0.05 1.67 5.16 85.55 0.44 2.11 16 17 C 0.44 20.74 7.29 87.65 0.64 21.38 16 18 O -0.62 -34.12 15.13 -3.06 -0.05 -34.17 16 19 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.62 13.05 21.66 0.28 -49.33 16 24 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 C -0.15 -2.16 9.77 30.62 0.30 -1.86 16 29 C -0.14 -1.44 9.24 30.62 0.28 -1.15 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.02 0.49 7.60 -2.39 -0.02 0.47 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.87 5.83 -2.39 -0.01 0.86 16 34 H 0.10 0.64 8.09 -2.39 -0.02 0.62 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.50 7.11 -2.38 -0.02 2.49 16 37 H 0.06 1.61 7.95 -2.39 -0.02 1.59 16 38 H 0.06 1.63 7.84 -2.39 -0.02 1.62 16 39 H 0.09 1.30 6.43 -2.39 -0.02 1.29 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.13 1.38 4.98 -2.39 -0.01 1.36 16 42 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 43 H 0.07 2.01 6.98 -2.39 -0.02 1.99 16 44 H 0.12 3.20 8.00 -2.39 -0.02 3.18 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.08 1.52 7.97 -2.39 -0.02 1.50 16 48 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.09 1.11 6.87 -2.38 -0.02 1.09 16 Total: -1.00 -75.34 385.88 1.10 -74.24 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.22 Total: 34.23 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 5.90 Total: 16.46 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -6.96 Total: -115.35 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -0.10 Total: -54.94 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -75.34 1.10 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267423993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.218 kcal (2) G-P(sol) polarization free energy of solvation -75.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds