Wall clock time and date at job start Tue Mar 31 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33692 * 126.26945 * 2 1 4 4 C 1.30617 * 108.99724 * 180.25477 * 3 2 1 5 5 O 1.33667 * 109.15083 * 359.76284 * 4 3 2 6 6 C 1.35346 * 107.68503 * 359.97438 * 5 4 3 7 7 C 1.46725 * 126.64303 * 179.97438 * 6 5 4 8 8 O 1.21684 * 119.99701 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99929 * 0.02720 * 7 6 5 10 10 C 1.46500 * 119.99741 * 179.72315 * 9 7 6 11 11 C 1.52997 * 109.46783 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46783 * 180.02562 * 11 10 9 13 13 C 1.36943 * 120.00211 * 270.00141 * 12 11 10 14 14 H 1.08001 * 119.99835 * 15.23638 * 13 12 11 15 15 C 1.38807 * 120.00244 * 195.23575 * 13 12 11 16 16 N 1.31617 * 119.99857 * 46.91666 * 15 13 12 17 17 Si 1.86802 * 120.00229 * 226.91756 * 15 13 12 18 18 H 1.48504 * 109.46991 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47008 * 119.99614 * 17 15 13 20 20 H 1.48494 * 109.47163 * 240.00010 * 17 15 13 21 21 C 1.46504 * 120.00109 * 90.00162 * 12 11 10 22 22 C 1.54240 * 108.89424 * 69.45248 * 21 12 11 23 23 C 1.50471 * 108.52513 * 159.26475 * 22 21 12 24 24 C 1.54066 * 112.49949 * 94.15056 * 23 22 21 25 25 C 1.54068 * 112.81458 * 318.28522 * 24 23 22 26 26 C 1.50473 * 112.49522 * 318.28100 * 25 24 23 27 27 C 1.45537 * 108.89545 * 306.56849 * 21 12 11 28 28 H 1.08999 * 109.46980 * 270.14032 * 1 2 3 29 29 H 1.08991 * 109.47237 * 30.14205 * 1 2 3 30 30 H 1.09003 * 109.46472 * 150.14562 * 1 2 3 31 31 H 1.08001 * 125.42706 * 179.74428 * 4 3 2 32 32 H 0.97000 * 119.99914 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.47241 * 300.00370 * 10 9 7 34 34 H 1.09003 * 109.46976 * 60.00265 * 10 9 7 35 35 H 1.08995 * 109.47331 * 300.00101 * 11 10 9 36 36 H 1.09003 * 109.46973 * 60.00477 * 11 10 9 37 37 H 0.97002 * 119.99944 * 175.76970 * 16 15 13 38 38 H 1.09000 * 108.87131 * 187.96176 * 21 12 11 39 39 H 1.09004 * 109.62612 * 278.97598 * 22 21 12 40 40 H 1.09004 * 109.62802 * 39.55342 * 22 21 12 41 41 H 1.09000 * 108.87734 * 333.36893 * 23 22 21 42 42 H 1.09002 * 108.87587 * 214.92392 * 23 22 21 43 43 H 1.08997 * 108.81819 * 197.42332 * 24 23 22 44 44 H 1.09005 * 108.72508 * 79.08198 * 24 23 22 45 45 H 1.09002 * 108.87534 * 197.50638 * 25 24 23 46 46 H 1.08994 * 108.87714 * 79.06314 * 25 24 23 47 47 H 1.09001 * 109.62771 * 334.44916 * 26 25 24 48 48 H 1.09000 * 109.62891 * 213.86941 * 26 25 24 49 49 H 1.08998 * 108.89607 * 303.44108 * 27 21 12 50 50 H 1.09004 * 108.89841 * 62.02960 * 27 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6901 -0.0055 5 8 3.5890 -0.6459 -0.0039 6 6 2.3137 -1.0991 0.0034 7 6 1.8828 -2.5016 0.0070 8 8 0.6968 -2.7737 0.0132 9 7 2.8007 -3.4886 0.0035 10 6 2.3704 -4.8890 0.0132 11 6 3.5995 -5.8001 0.0061 12 7 3.1692 -7.2005 0.0152 13 6 2.9784 -7.8504 1.2054 14 1 2.9016 -7.2857 2.1228 15 6 2.8836 -9.2350 1.2327 16 7 3.7576 -9.9675 0.5756 17 14 1.5155 -10.0587 2.2019 18 1 0.6710 -9.0207 2.8459 19 1 0.6813 -10.8755 1.2842 20 1 2.1063 -10.9344 3.2455 21 6 2.9431 -7.9056 -1.2489 22 6 4.3003 -8.1243 -1.9485 23 6 4.1526 -9.2489 -2.9373 24 6 3.8258 -8.7468 -4.3567 25 6 2.7952 -7.6016 -4.3627 26 6 1.6708 -7.8338 -3.3901 27 6 2.0184 -7.1301 -2.0623 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8886 -0.5160 30 1 -0.3632 -0.8913 -0.5116 31 1 4.4043 1.3446 -0.0108 32 1 3.7461 -3.2717 -0.0018 33 1 1.7800 -5.0815 0.9091 34 1 1.7650 -5.0892 -0.8708 35 1 4.1894 -5.6075 -0.8899 36 1 4.2052 -5.6000 0.8899 37 1 3.7289 -10.9347 0.6441 38 1 2.4968 -8.8769 -1.0359 39 1 4.5940 -7.2137 -2.4707 40 1 5.0562 -8.3850 -1.2077 41 1 3.3520 -9.9090 -2.6036 42 1 5.0836 -9.8149 -2.9691 43 1 3.4314 -9.5777 -4.9414 44 1 4.7456 -8.3944 -4.8236 45 1 2.3797 -7.5064 -5.3659 46 1 3.3002 -6.6713 -4.1026 47 1 1.5513 -8.9034 -3.2172 48 1 0.7466 -7.4196 -3.7931 49 1 1.1004 -6.9694 -1.4971 50 1 2.4694 -6.1629 -2.2846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269605952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:06 Heat of formation + Delta-G solvation = 2.098158 kcal Electronic energy + Delta-G solvation = -30093.808179 eV Core-core repulsion = 26123.278522 eV Total energy + Delta-G solvation = -3970.529657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.61761 -39.46124 -38.64935 -35.89556 -35.42490 -34.21518 -31.97589 -31.72401 -31.29642 -30.37807 -28.56854 -27.26245 -24.54882 -24.21985 -23.94196 -22.96266 -21.80745 -21.05753 -20.65286 -19.34529 -18.65543 -18.16566 -17.11743 -17.01248 -16.60184 -15.85630 -15.18685 -15.02935 -14.71913 -14.53683 -14.24908 -14.09476 -13.90636 -13.48669 -13.41159 -13.32805 -13.08461 -12.85722 -12.37123 -12.33422 -12.28602 -11.87648 -11.49994 -11.43897 -11.31349 -11.30821 -11.07620 -10.91112 -10.73506 -10.53831 -10.27526 -10.16183 -10.12094 -9.98547 -9.78834 -9.64626 -9.45823 -9.31702 -9.20260 -8.75095 -8.25583 -7.04266 -6.02926 -3.03497 0.68368 2.23604 2.30906 3.08578 3.25871 3.37498 3.50741 3.56897 3.83221 4.48539 4.55321 4.70124 5.02382 5.15246 5.23742 5.27643 5.31422 5.35191 5.49334 5.53302 5.68814 5.73231 5.75848 5.76833 5.80501 5.86811 5.93439 6.03179 6.12952 6.14088 6.20805 6.23427 6.37172 6.44164 6.49978 6.56017 6.58434 6.65918 6.76189 6.79658 6.83155 6.90700 7.05825 7.15167 7.27042 7.48913 7.56630 7.61567 7.88459 8.12227 8.24083 9.07728 9.80312 10.30225 11.04037 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003241 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.559824 B = 8638.291293 C = 9869.483455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.072 3.928 3 N -0.495 5.495 4 C 0.196 3.804 5 O -0.191 6.191 6 C -0.108 4.108 7 C 0.601 3.399 8 O -0.515 6.515 9 N -0.708 5.708 10 C 0.086 3.914 11 C 0.142 3.858 12 N -0.580 5.580 13 C -0.292 4.292 14 H 0.072 0.928 15 C 0.034 3.966 16 N -0.845 5.845 17 Si 0.849 3.151 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.293 1.293 21 C 0.188 3.812 22 C -0.111 4.111 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.255 0.745 32 H 0.401 0.599 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 14.426 -6.781 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 N -0.224 5.224 4 C -0.029 4.029 5 O -0.077 6.077 6 C -0.163 4.163 7 C 0.385 3.615 8 O -0.393 6.393 9 N -0.358 5.358 10 C -0.039 4.039 11 C 0.013 3.987 12 N -0.300 5.300 13 C -0.419 4.419 14 H 0.090 0.910 15 C -0.169 4.169 16 N -0.484 5.484 17 Si 0.676 3.324 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.221 1.221 21 C 0.082 3.918 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.166 4.166 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.271 0.729 32 H 0.235 0.765 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.367 14.551 -6.824 16.075 hybrid contribution 0.220 -0.933 0.554 1.107 sum 0.587 13.618 -6.270 15.004 Atomic orbital electron populations 1.20389 0.85329 1.04331 1.03745 1.22060 0.98421 0.86355 0.98290 1.70334 1.01378 1.31551 1.19153 1.28297 0.97594 0.79527 0.97505 1.84500 1.29776 1.24371 1.69005 1.23180 0.81246 0.96671 1.15199 1.16361 0.86069 0.81201 0.77896 1.90865 1.15744 1.81733 1.50999 1.46052 1.09458 1.07369 1.72921 1.22829 1.01130 0.76962 1.02939 1.20756 0.92317 0.85953 0.99628 1.44110 1.77746 1.05431 1.02699 1.18895 1.47296 0.89013 0.86699 0.91004 1.24498 0.98459 0.96405 0.97549 1.70472 1.29103 1.05261 1.43572 0.87059 0.86045 0.79501 0.79760 1.20078 1.21400 1.22076 1.19203 0.92439 0.96203 0.83963 1.21643 1.00599 0.95680 0.97152 1.21174 1.00847 0.98940 0.93397 1.21957 0.97947 0.97534 0.97887 1.21294 0.96488 0.98871 0.98340 1.21280 0.97090 1.01216 0.95758 1.21200 1.00504 0.99269 0.95613 0.90033 0.90619 0.88533 0.72898 0.76509 0.91050 0.90935 0.94063 0.92955 0.93553 0.89944 0.94871 0.90490 0.92244 0.93509 0.93287 0.93266 0.93469 0.92454 0.91797 0.92881 0.92445 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.87 36.01 0.36 -0.56 16 2 C 0.07 0.93 7.16 -82.47 -0.59 0.34 16 3 N -0.49 -5.77 11.26 -10.88 -0.12 -5.90 16 4 C 0.20 1.68 13.21 52.25 0.69 2.37 16 5 O -0.19 -2.07 10.57 4.41 0.05 -2.03 16 6 C -0.11 -1.43 7.18 -36.84 -0.26 -1.70 16 7 C 0.60 9.20 7.79 -12.83 -0.10 9.10 16 8 O -0.52 -9.24 14.80 5.20 0.08 -9.17 16 9 N -0.71 -10.21 5.55 -61.60 -0.34 -10.55 16 10 C 0.09 1.48 5.68 -4.04 -0.02 1.46 16 11 C 0.14 2.61 5.01 -4.04 -0.02 2.59 16 12 N -0.58 -12.88 2.38 -168.96 -0.40 -13.29 16 13 C -0.29 -7.46 9.49 -15.06 -0.14 -7.61 16 14 H 0.07 1.87 8.06 -52.49 -0.42 1.45 16 15 C 0.03 0.88 4.05 -17.43 -0.07 0.81 16 16 N -0.85 -22.40 12.12 55.49 0.67 -21.73 16 17 Si 0.85 20.44 29.69 -169.99 -5.05 15.39 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.19 3.91 1.33 -70.80 -0.09 3.81 16 22 C -0.11 -2.17 4.46 -27.35 -0.12 -2.29 16 23 C -0.11 -1.85 5.31 -27.44 -0.15 -2.00 16 24 C -0.12 -1.68 5.85 -25.62 -0.15 -1.83 16 25 C -0.11 -1.60 5.31 -27.44 -0.15 -1.75 16 26 C -0.12 -1.80 5.61 -27.35 -0.15 -1.96 16 27 C -0.13 -2.30 3.26 -29.60 -0.10 -2.39 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.20 6.47 -51.93 -0.34 0.86 16 31 H 0.26 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.40 4.85 8.27 -40.82 -0.34 4.51 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.31 5.40 -51.93 -0.28 1.03 16 35 H 0.04 0.71 7.25 -51.93 -0.38 0.33 16 36 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 37 H 0.25 6.59 8.32 -40.82 -0.34 6.25 16 38 H 0.08 2.00 5.35 -51.93 -0.28 1.72 16 39 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 40 H 0.08 1.76 7.98 -51.93 -0.41 1.35 16 41 H 0.06 1.14 6.63 -51.93 -0.34 0.80 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.83 6.63 -51.93 -0.34 0.49 16 47 H 0.06 1.06 6.98 -51.93 -0.36 0.69 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 50 H 0.05 0.86 5.61 -51.93 -0.29 0.57 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -29.52 386.80 -8.25 -37.78 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.89 Total: 5.25 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.07 Total: -1.59 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.19 Total: -51.46 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.12 Total: -11.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.05 Total: 15.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.52 -8.25 -37.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269605952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.877 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds