Wall clock time and date at job start Tue Mar 31 2020 18:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.61794 * 2 1 4 4 C 1.34483 * 108.69900 * 179.73702 * 3 2 1 5 5 C 1.34327 * 107.66595 * 0.39475 * 4 3 2 6 6 C 1.50704 * 126.44046 * 179.87773 * 5 4 3 7 7 C 1.50709 * 109.47062 * 89.70570 * 6 5 4 8 8 O 1.21274 * 119.99888 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99567 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99506 * 181.91961 * 9 7 6 11 11 C 1.52999 * 109.47010 * 47.02360 * 10 9 7 12 12 N 1.46500 * 109.47647 * 54.14230 * 11 10 9 13 13 C 1.36934 * 120.00396 * 177.74040 * 12 11 10 14 14 H 1.07996 * 119.99771 * 359.97438 * 13 12 11 15 15 C 1.38807 * 119.99692 * 179.72455 * 13 12 11 16 16 N 1.31620 * 120.00333 * 0.27629 * 15 13 12 17 17 Si 1.86804 * 119.99617 * 180.27465 * 15 13 12 18 18 H 1.48495 * 109.47285 * 59.99979 * 17 15 13 19 19 H 1.48502 * 109.47007 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47255 * 299.99788 * 17 15 13 21 21 C 1.52997 * 109.46867 * 167.01828 * 10 9 7 22 22 C 1.52999 * 109.46871 * 60.00447 * 21 10 9 23 23 C 1.52999 * 109.47354 * 59.99797 * 22 21 10 24 24 C 1.52997 * 109.47297 * 299.99942 * 23 22 21 25 25 C 1.52999 * 109.47332 * 287.02016 * 10 9 7 26 26 H 1.08997 * 109.47027 * 179.97438 * 25 10 9 27 27 C 1.53005 * 109.47119 * 59.99932 * 25 10 9 28 28 O 1.33964 * 125.61950 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46758 * 270.02386 * 1 2 3 30 30 H 1.09000 * 109.47231 * 30.02276 * 1 2 3 31 31 H 1.08999 * 109.46882 * 150.02893 * 1 2 3 32 32 H 1.08001 * 126.16688 * 180.26246 * 4 3 2 33 33 H 1.09000 * 109.47267 * 329.71237 * 6 5 4 34 34 H 1.08997 * 109.47289 * 209.71077 * 6 5 4 35 35 H 0.96999 * 119.99943 * 1.92850 * 9 7 6 36 36 H 1.09011 * 109.46913 * 294.14163 * 11 10 9 37 37 H 1.09000 * 109.47539 * 174.14701 * 11 10 9 38 38 H 0.97006 * 119.99245 * 357.73691 * 12 11 10 39 39 H 0.97000 * 119.99692 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.47062 * 180.02562 * 21 10 9 41 41 H 1.08995 * 109.47188 * 300.00331 * 21 10 9 42 42 H 1.08997 * 109.47420 * 299.99588 * 22 21 10 43 43 H 1.09004 * 109.46951 * 179.97438 * 22 21 10 44 44 H 1.09002 * 109.46816 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.46982 * 59.99891 * 23 22 21 46 46 H 1.09006 * 109.46823 * 300.00394 * 24 23 22 47 47 H 1.08995 * 109.47188 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.46689 * 52.18264 * 27 25 10 49 49 H 1.08997 * 109.46943 * 172.17932 * 27 25 10 50 50 H 1.08997 * 109.47314 * 292.18724 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0058 5 6 3.5697 -0.6756 0.0007 6 6 4.7937 -1.5549 0.0017 7 6 5.2008 -1.8476 1.4229 8 8 4.5599 -1.3879 2.3441 9 7 6.2766 -2.6210 1.6700 10 6 6.6476 -2.9401 3.0508 11 6 5.4038 -3.3834 3.8236 12 7 4.7504 -4.4826 3.1087 13 6 3.6360 -5.0770 3.6377 14 1 3.2389 -4.7357 4.5822 15 6 3.0137 -6.1146 2.9574 16 7 3.4980 -6.5308 1.8064 17 14 1.4889 -6.9202 3.6753 18 1 0.4192 -5.9025 3.8335 19 1 1.0203 -7.9940 2.7629 20 1 1.8156 -7.5052 5.0006 21 6 7.6792 -4.0700 3.0535 22 6 8.9230 -3.6267 2.2807 23 6 9.5227 -2.3869 2.9472 24 6 8.4911 -1.2571 2.9445 25 6 7.2473 -1.7004 3.7173 26 1 7.5229 -1.9377 4.7448 27 6 6.2156 -0.5705 3.7145 28 8 2.2872 -1.0890 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.4157 1.3162 0.0113 33 1 5.6084 -1.0442 -0.5117 34 1 4.5699 -2.4898 -0.5121 35 1 6.8051 -2.9663 0.9335 36 1 4.7125 -2.5451 3.9111 37 1 5.6949 -3.7196 4.8188 38 1 5.1074 -4.7893 2.2604 39 1 3.0633 -7.2562 1.3313 40 1 7.9550 -4.3078 4.0810 41 1 7.2520 -4.9532 2.5787 42 1 8.6471 -3.3893 1.2533 43 1 9.6582 -4.4315 2.2830 44 1 10.4091 -2.0714 2.3968 45 1 9.7988 -2.6244 3.9746 46 1 8.2150 -1.0197 1.9170 47 1 8.9181 -0.3740 3.4197 48 1 5.2802 -0.9316 4.1421 49 1 6.5886 0.2636 4.3089 50 1 6.0429 -0.2386 2.6908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269665363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:21 Heat of formation + Delta-G solvation = 3.685784 kcal Electronic energy + Delta-G solvation = -31418.102188 eV Core-core repulsion = 27447.641376 eV Total energy + Delta-G solvation = -3970.460812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.10466 -40.71416 -37.78954 -34.61403 -34.51025 -33.30899 -33.01447 -32.30952 -31.31304 -30.16346 -29.22724 -26.39902 -25.76839 -24.97495 -22.94496 -22.29468 -21.37629 -21.17711 -20.55959 -20.28605 -18.75656 -17.28579 -17.12011 -16.73846 -16.16222 -15.91686 -15.22666 -14.75441 -14.48938 -14.22406 -14.13139 -13.83055 -13.74420 -13.63510 -13.31021 -13.01458 -12.98553 -12.87559 -12.66179 -12.48798 -12.37040 -11.99640 -11.76805 -11.62055 -11.42767 -11.29729 -11.07312 -11.04396 -10.83765 -10.75607 -10.72133 -10.37250 -10.36572 -10.11366 -9.96742 -9.63034 -9.57894 -9.21779 -8.66657 -8.42978 -8.32359 -6.74943 -5.69136 -2.93671 1.62984 2.78356 2.87427 3.10012 3.48365 3.52072 3.53883 3.65043 4.21110 4.65881 4.75281 4.84251 4.88023 4.89266 5.10909 5.13034 5.15596 5.26554 5.29527 5.37741 5.40596 5.54739 5.58801 5.61988 5.64924 5.65877 5.67018 5.73881 5.80341 5.99931 6.01948 6.08089 6.13472 6.21900 6.24585 6.28477 6.30569 6.38851 6.43140 6.50720 6.53018 6.66437 6.71025 6.83507 7.10571 7.27969 7.78471 7.91728 7.96139 8.51130 8.72560 9.62430 10.21729 10.57419 11.54276 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006928 B = 0.006230 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4040.878582 B = 4493.083637 C = 7661.282753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.186 3.814 3 N -0.489 5.489 4 C -0.035 4.035 5 C -0.012 4.012 6 C -0.061 4.061 7 C 0.517 3.483 8 O -0.503 6.503 9 N -0.709 5.709 10 C 0.183 3.817 11 C 0.132 3.868 12 N -0.723 5.723 13 C -0.224 4.224 14 H 0.066 0.934 15 C -0.017 4.017 16 N -0.938 5.938 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.288 1.288 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.092 4.092 26 H 0.071 0.929 27 C -0.139 4.139 28 O -0.187 6.187 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.381 0.619 39 H 0.252 0.748 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.026 0.974 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 12.242 -5.120 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.219 5.219 4 C -0.174 4.174 5 C -0.066 4.066 6 C -0.101 4.101 7 C 0.302 3.698 8 O -0.377 6.377 9 N -0.362 5.362 10 C 0.097 3.903 11 C 0.004 3.996 12 N -0.367 5.367 13 C -0.356 4.356 14 H 0.084 0.916 15 C -0.212 4.212 16 N -0.588 5.588 17 Si 0.735 3.265 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.215 1.215 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.112 4.112 26 H 0.090 0.910 27 C -0.196 4.196 28 O -0.073 6.073 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.215 0.785 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.045 0.955 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.820 13.088 -4.326 15.848 hybrid contribution -0.095 -1.591 -0.222 1.609 sum 7.725 11.496 -4.548 14.578 Atomic orbital electron populations 1.20221 0.81690 1.04693 1.04737 1.26157 0.96405 0.78752 1.00706 1.70375 1.02028 1.30354 1.19120 1.22837 0.94996 0.92646 1.06900 1.22471 0.83332 0.94498 1.06271 1.20097 0.91832 1.00764 0.97426 1.19824 0.81023 0.78977 0.89935 1.90738 1.52118 1.50299 1.44566 1.45779 1.29679 1.52364 1.08388 1.20577 0.95192 0.93179 0.81358 1.21321 0.92263 0.92686 0.93298 1.42167 1.31788 1.37884 1.24823 1.19164 1.02556 1.11028 1.02838 0.91633 1.24632 0.99513 0.99752 0.97263 1.69629 1.42195 1.31107 1.15850 0.86314 0.83489 0.78833 0.77882 1.21485 1.21824 1.21473 1.21786 0.94091 0.98179 1.01689 1.21560 0.97471 0.97455 0.99190 1.21552 0.97731 0.95582 1.00779 1.21546 0.95183 0.97398 1.00555 1.21486 0.95189 0.95545 0.99021 0.91038 1.22310 0.99112 0.96181 1.01987 1.84438 1.16470 1.37404 1.69018 0.88955 0.88441 0.89409 0.80470 0.86454 0.86773 0.77208 0.91944 0.96586 0.78539 0.93800 0.90791 0.90096 0.92318 0.92007 0.92535 0.92153 0.92128 0.92571 0.90059 0.95508 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.00 0.38 -0.23 16 2 C 0.19 2.94 8.34 -12.95 -0.11 2.83 16 3 N -0.49 -8.01 11.29 -11.10 -0.13 -8.14 16 4 C -0.03 -0.53 11.80 -17.77 -0.21 -0.74 16 5 C -0.01 -0.19 5.88 -35.69 -0.21 -0.40 16 6 C -0.06 -0.81 6.25 -29.03 -0.18 -0.99 16 7 C 0.52 8.36 5.97 -10.98 -0.07 8.29 16 8 O -0.50 -9.94 9.38 5.56 0.05 -9.89 16 9 N -0.71 -10.14 3.53 -47.61 -0.17 -10.31 16 10 C 0.18 2.83 0.32 -131.82 -0.04 2.79 16 11 C 0.13 2.76 4.40 -4.04 -0.02 2.74 16 12 N -0.72 -18.14 5.04 -59.91 -0.30 -18.44 16 13 C -0.22 -6.44 9.99 -15.06 -0.15 -6.59 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 16 N -0.94 -28.23 13.06 55.49 0.72 -27.51 16 17 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C -0.12 -1.70 4.72 -26.73 -0.13 -1.82 16 22 C -0.12 -1.28 5.75 -26.73 -0.15 -1.44 16 23 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 24 C -0.11 -1.20 5.04 -26.73 -0.13 -1.34 16 25 C -0.09 -1.27 2.07 -90.62 -0.19 -1.45 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 C -0.14 -2.13 7.30 37.16 0.27 -1.86 16 28 O -0.19 -3.39 10.78 5.37 0.06 -3.33 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.18 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.39 4.63 6.98 -40.82 -0.29 4.34 16 36 H 0.06 1.45 4.22 -51.92 -0.22 1.23 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 9.79 6.58 -40.82 -0.27 9.52 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.36 7.29 -51.93 -0.38 0.98 16 42 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 1.50 5.06 -51.93 -0.26 1.24 16 49 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.92 5.50 -51.93 -0.29 0.63 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -35.21 383.65 -8.10 -43.31 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.90 Total: 12.57 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.19 Total: -2.13 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.13 Total: -64.40 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.11 Total: -13.21 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.21 -8.10 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269665363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.996 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds