Wall clock time and date at job start Tue Mar 31 2020 19:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46942 * 2 1 4 4 C 1.36769 * 125.80503 * 270.00041 * 3 2 1 5 5 C 1.47264 * 126.94150 * 0.02562 * 4 3 2 6 6 O 1.21629 * 119.99751 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00052 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47287 * 175.90275 * 8 7 5 10 10 N 1.46494 * 109.54438 * 305.06264 * 9 8 7 11 11 C 1.36934 * 120.00152 * 300.68716 * 10 9 8 12 12 H 1.08002 * 119.99872 * 354.08660 * 11 10 9 13 13 C 1.38812 * 119.99993 * 174.07895 * 11 10 9 14 14 N 1.31619 * 119.99892 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00122 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47112 * 89.99694 * 15 13 11 17 17 H 1.48498 * 109.47070 * 210.00123 * 15 13 11 18 18 H 1.48497 * 109.46694 * 330.00139 * 15 13 11 19 19 C 1.53181 * 109.54250 * 184.88192 * 9 8 7 20 20 C 1.53106 * 109.15331 * 183.24320 * 19 9 8 21 21 O 1.42906 * 109.48716 * 57.47692 * 20 19 9 22 22 C 1.42894 * 114.09913 * 298.88760 * 21 20 19 23 23 C 1.53093 * 109.41873 * 61.15618 * 22 21 20 24 24 C 1.46688 * 106.11668 * 180.28369 * 4 3 2 25 25 C 1.34491 * 106.33050 * 359.56851 * 24 4 3 26 26 N 1.34664 * 125.79846 * 90.02723 * 3 2 1 27 27 C 1.46497 * 124.85211 * 359.97438 * 26 3 2 28 28 H 1.09002 * 109.47275 * 299.99730 * 1 2 3 29 29 H 1.08998 * 109.47269 * 59.99921 * 1 2 3 30 30 H 1.09004 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 240.00270 * 2 1 3 32 32 H 1.08998 * 109.47269 * 120.00079 * 2 1 3 33 33 H 0.97003 * 120.00504 * 0.02562 * 7 5 4 34 34 H 1.08994 * 109.47739 * 295.90773 * 8 7 5 35 35 H 1.09003 * 109.46963 * 55.90810 * 8 7 5 36 36 H 0.97002 * 120.00131 * 120.69209 * 10 9 8 37 37 H 0.97003 * 119.99379 * 179.97438 * 14 13 11 38 38 H 1.08993 * 109.52343 * 303.05938 * 19 9 8 39 39 H 1.09001 * 109.52235 * 63.25433 * 19 9 8 40 40 H 1.08996 * 109.41038 * 297.49655 * 20 19 9 41 41 H 1.09004 * 109.49257 * 177.51038 * 20 19 9 42 42 H 1.09004 * 109.48487 * 301.17628 * 22 21 20 43 43 H 1.09001 * 109.49539 * 181.14594 * 22 21 20 44 44 H 1.08997 * 109.52696 * 182.48802 * 23 22 21 45 45 H 1.09001 * 109.57116 * 62.32741 * 23 22 21 46 46 H 1.07998 * 126.83311 * 179.73302 * 24 4 3 47 47 H 1.08004 * 125.56703 * 180.17859 * 25 24 4 48 48 H 1.09000 * 109.47132 * 90.00238 * 27 26 3 49 49 H 1.08996 * 109.47458 * 209.99976 * 27 26 3 50 50 H 1.09001 * 109.47035 * 330.00670 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1529 1.7636 -2.5156 6 8 1.7565 0.6454 -2.7839 7 7 2.4573 2.6262 -3.5053 8 6 2.3115 2.2169 -4.9043 9 6 2.6216 3.4043 -5.8181 10 7 1.7732 4.5405 -5.4502 11 6 0.4099 4.4206 -5.4972 12 1 -0.0398 3.5231 -5.8955 13 6 -0.3940 5.4525 -5.0327 14 7 0.1542 6.5464 -4.5476 15 14 -2.2537 5.2887 -5.0961 16 1 -2.7399 4.6749 -3.8343 17 1 -2.8637 6.6327 -5.2600 18 1 -2.6359 4.4283 -6.2444 19 6 2.3521 3.0140 -7.2747 20 6 2.7418 4.1798 -8.1874 21 8 4.1153 4.5127 -7.9756 22 6 4.4153 4.9314 -6.6428 23 6 4.0951 3.7952 -5.6680 24 6 2.7659 3.4750 -0.6150 25 6 2.7338 3.4029 0.7276 26 7 2.2953 2.1633 1.0922 27 6 2.1336 1.7057 2.4745 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7731 3.5181 -3.2914 34 1 3.0037 1.4028 -5.1189 35 1 1.2896 1.8806 -5.0798 36 1 2.1772 5.3778 -5.1734 37 1 -0.4077 7.2677 -4.2234 38 1 2.9457 2.1370 -7.5325 39 1 1.2933 2.7885 -7.4014 40 1 2.1187 5.0440 -7.9572 41 1 2.5938 3.8920 -9.2283 42 1 3.8141 5.8055 -6.3922 43 1 5.4730 5.1850 -6.5705 44 1 4.2815 4.1277 -4.6469 45 1 4.7249 2.9340 -5.8914 46 1 3.0717 4.3223 -1.2108 47 1 3.0138 4.1951 1.4061 48 1 3.0623 1.2493 2.8171 49 1 1.8894 2.5551 3.1123 50 1 1.3290 0.9719 2.5225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271063818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:40 Heat of formation + Delta-G solvation = -49.993563 kcal Electronic energy + Delta-G solvation = -30655.865933 eV Core-core repulsion = 26683.077410 eV Total energy + Delta-G solvation = -3972.788523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29108 -40.90425 -39.68509 -37.24105 -35.14637 -34.50922 -33.91498 -33.39960 -31.97465 -30.93539 -29.39376 -28.56068 -26.99225 -25.91637 -24.68605 -24.34149 -23.56108 -22.65420 -20.91123 -20.28542 -19.79484 -19.06233 -18.34360 -17.18083 -16.96037 -16.86104 -16.59027 -16.40656 -16.12254 -15.99242 -15.61558 -15.44169 -15.27231 -15.03140 -14.90527 -14.32021 -14.16402 -14.03068 -13.72165 -13.66359 -13.46824 -13.29383 -13.18219 -13.05894 -12.91344 -12.84948 -12.70557 -12.67706 -12.31194 -12.23187 -12.09510 -11.87414 -11.70735 -11.48000 -11.12063 -10.95235 -10.71762 -10.31966 -9.88150 -9.43097 -9.06819 -8.95305 -7.90112 -5.15278 0.82467 1.42011 1.45400 1.50043 1.54730 1.95199 2.53891 2.62505 2.74565 3.08121 3.43507 3.73869 3.76886 3.88977 3.97951 4.00925 4.05393 4.15866 4.16864 4.24661 4.36960 4.38613 4.47584 4.47949 4.57769 4.62644 4.65744 4.71097 4.78325 4.80292 4.84742 4.89812 4.90228 5.03455 5.04392 5.08402 5.10858 5.23124 5.28521 5.29553 5.34813 5.35492 5.60826 5.74785 5.83429 6.14161 6.31964 6.37110 6.41878 6.85252 7.41346 7.50722 8.10194 8.37387 9.32174 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.004082 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.577441 B = 6858.458545 C = 7972.396648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C 0.098 3.902 4 C -0.268 4.268 5 C 0.577 3.423 6 O -0.597 6.597 7 N -0.694 5.694 8 C 0.130 3.870 9 C 0.187 3.813 10 N -0.710 5.710 11 C -0.210 4.210 12 H 0.062 0.938 13 C -0.060 4.060 14 N -0.957 5.957 15 Si 0.945 3.055 16 H -0.302 1.302 17 H -0.296 1.296 18 H -0.275 1.275 19 C -0.151 4.151 20 C 0.076 3.924 21 O -0.396 6.396 22 C 0.066 3.934 23 C -0.143 4.143 24 C -0.189 4.189 25 C -0.008 4.008 26 N -0.441 5.441 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.402 0.598 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.377 0.623 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.141 0.859 47 H 0.202 0.798 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -8.614 11.931 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C -0.021 4.021 4 C -0.278 4.278 5 C 0.368 3.632 6 O -0.481 6.481 7 N -0.343 5.343 8 C 0.003 3.997 9 C 0.097 3.903 10 N -0.351 5.351 11 C -0.342 4.342 12 H 0.080 0.920 13 C -0.253 4.253 14 N -0.608 5.608 15 Si 0.777 3.223 16 H -0.230 1.230 17 H -0.222 1.222 18 H -0.201 1.201 19 C -0.191 4.191 20 C -0.001 4.001 21 O -0.315 6.315 22 C -0.011 4.011 23 C -0.181 4.181 24 C -0.213 4.213 25 C -0.134 4.134 26 N -0.116 5.116 27 C -0.081 4.081 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.238 0.762 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.211 0.789 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.119 0.881 42 H 0.056 0.944 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.159 0.841 47 H 0.219 0.781 48 H 0.111 0.889 49 H 0.125 0.875 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.993 -9.522 11.912 17.704 hybrid contribution -1.529 1.063 0.119 1.867 sum 7.464 -8.459 12.031 16.492 Atomic orbital electron populations 1.21598 0.94214 1.02555 1.00862 1.20250 0.96436 0.88653 1.04152 1.20455 1.00915 0.95187 0.85533 1.20296 1.17999 0.97812 0.91707 1.17780 0.76146 0.83996 0.85294 1.90627 1.50057 1.22180 1.85264 1.45463 1.66614 1.16703 1.05484 1.21612 0.99523 0.97302 0.81246 1.20030 0.90811 0.87295 0.92200 1.42455 1.01831 1.10893 1.79931 1.19169 0.83838 1.00037 1.31184 0.91962 1.25151 1.00140 0.97283 1.02685 1.69741 1.34304 1.07224 1.49517 0.85560 0.83392 0.76157 0.77195 1.23034 1.22224 1.20053 1.22441 1.01604 0.98991 0.96075 1.22375 0.81991 0.96434 0.99290 1.87799 1.26869 1.86962 1.29830 1.22566 1.01517 0.95302 0.81672 1.22303 0.94787 1.00468 1.00532 1.22182 1.07422 0.96640 0.95016 1.22145 1.06598 0.88888 0.95773 1.43781 1.49674 1.11065 1.07062 1.22447 1.04624 1.03194 0.77829 0.91919 0.95718 0.90317 0.90256 0.88314 0.76201 0.92032 0.94881 0.78935 0.94392 0.90339 0.92224 0.94532 0.88067 0.94391 0.86876 0.90548 0.89343 0.84097 0.78099 0.88880 0.87464 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.89 71.98 0.71 -2.67 16 2 C -0.06 -1.45 5.31 29.85 0.16 -1.29 16 3 C 0.10 2.84 6.14 41.78 0.26 3.10 16 4 C -0.27 -9.57 6.29 -19.04 -0.12 -9.69 16 5 C 0.58 23.84 7.81 86.62 0.68 24.52 16 6 O -0.60 -27.12 14.81 -4.12 -0.06 -27.18 16 7 N -0.69 -27.30 5.16 -466.53 -2.41 -29.71 16 8 C 0.13 5.05 4.32 86.38 0.37 5.42 16 9 C 0.19 6.86 0.41 3.73 0.00 6.86 16 10 N -0.71 -31.98 3.77 -302.80 -1.14 -33.12 16 11 C -0.21 -10.99 8.70 84.03 0.73 -10.26 16 12 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 13 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 14 N -0.96 -55.75 13.07 21.65 0.28 -55.47 16 15 Si 0.95 46.87 29.55 68.60 2.03 48.90 16 16 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 17 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 C -0.15 -5.22 4.83 30.69 0.15 -5.07 16 20 C 0.08 2.57 6.68 72.02 0.48 3.06 16 21 O -0.40 -13.10 10.77 -148.98 -1.60 -14.70 16 22 C 0.07 2.00 6.67 72.01 0.48 2.48 16 23 C -0.14 -4.31 4.80 30.69 0.15 -4.17 16 24 C -0.19 -5.81 10.56 23.62 0.25 -5.56 16 25 C -0.01 -0.18 11.34 83.12 0.94 0.77 16 26 N -0.44 -9.67 3.09 -533.19 -1.65 -11.31 16 27 C 0.06 0.64 10.61 127.77 1.36 1.99 16 28 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.47 6.47 -2.39 -0.02 2.45 16 32 H 0.10 1.72 7.58 -2.39 -0.02 1.70 16 33 H 0.40 15.43 6.43 -92.71 -0.60 14.83 16 34 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.03 1.50 7.54 -2.39 -0.02 1.48 16 36 H 0.38 18.20 6.72 -92.71 -0.62 17.58 16 37 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 2.26 7.12 -2.39 -0.02 2.24 16 40 H 0.04 1.46 7.75 -2.39 -0.02 1.45 16 41 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 42 H 0.04 1.32 7.09 -2.39 -0.02 1.30 16 43 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.08 2.23 7.21 -2.39 -0.02 2.21 16 45 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.14 4.28 7.70 -2.91 -0.02 4.26 16 47 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.11 0.72 8.13 -2.39 -0.02 0.70 16 50 H 0.09 0.86 7.47 -2.39 -0.02 0.84 16 Total: -1.00 -71.51 394.98 2.24 -69.27 By element: Atomic # 1 Polarization: 46.97 SS G_CDS: -0.27 Total: 46.70 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 7.06 Total: 6.63 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -4.91 Total: -129.62 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.67 Total: -41.88 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.51 2.24 -69.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271063818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.275 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds