Wall clock time and date at job start Tue Mar 31 2020 19:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47096 * 119.99654 * 2 1 4 4 O 1.21615 * 119.99716 * 179.97438 * 3 2 1 5 5 N 1.34769 * 120.00488 * 0.02562 * 3 2 1 6 6 C 1.46504 * 120.00247 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47085 * 179.72655 * 6 5 3 8 8 H 1.09000 * 109.47618 * 64.99998 * 7 6 5 9 9 N 1.46906 * 109.47082 * 304.99780 * 7 6 5 10 10 C 1.46896 * 111.00058 * 296.53352 * 9 7 6 11 11 C 1.50701 * 109.47029 * 183.51168 * 10 9 7 12 12 O 1.21296 * 120.00160 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99951 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99824 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99976 * 359.97438 * 14 13 11 16 16 C 1.38941 * 119.99883 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00333 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00054 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47001 * 90.00197 * 18 16 14 20 20 H 1.48507 * 109.47136 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47201 * 329.99927 * 18 16 14 22 22 C 1.53004 * 109.47136 * 185.00424 * 7 6 5 23 23 C 1.52999 * 117.49532 * 254.30600 * 22 7 6 24 24 C 1.53005 * 117.50028 * 185.64909 * 22 7 6 25 25 C 1.32993 * 120.00140 * 180.02562 * 2 1 3 26 26 C 1.51400 * 136.31874 * 179.63239 * 25 2 1 27 27 C 1.53377 * 87.51890 * 206.05276 * 26 25 2 28 28 C 1.51405 * 136.31313 * 359.97438 * 25 2 1 29 29 H 1.08999 * 109.47115 * 90.00207 * 1 2 3 30 30 H 1.09003 * 109.47022 * 210.00332 * 1 2 3 31 31 H 1.09001 * 109.46862 * 329.99850 * 1 2 3 32 32 H 0.97006 * 120.00195 * 359.72468 * 5 3 2 33 33 H 1.09000 * 109.47216 * 299.72512 * 6 5 3 34 34 H 1.09003 * 109.47202 * 59.72979 * 6 5 3 35 35 H 1.00907 * 110.99802 * 172.58263 * 9 7 6 36 36 H 1.09003 * 109.47296 * 303.51269 * 10 9 7 37 37 H 1.09005 * 109.47102 * 63.51291 * 10 9 7 38 38 H 0.96993 * 119.99866 * 359.97438 * 13 11 10 39 39 H 0.97000 * 120.00377 * 180.02562 * 17 16 14 40 40 H 1.08994 * 115.55246 * 39.97177 * 22 7 6 41 41 H 1.08999 * 117.50164 * 359.97438 * 23 22 7 42 42 H 1.09004 * 117.50074 * 145.01826 * 23 22 7 43 43 H 1.08998 * 117.49478 * 214.97849 * 24 22 7 44 44 H 1.09002 * 117.49649 * 359.97438 * 24 22 7 45 45 H 1.09002 * 113.55660 * 320.63485 * 26 25 2 46 46 H 1.09002 * 113.56191 * 91.36308 * 26 25 2 47 47 H 1.08996 * 113.96780 * 220.29041 * 27 26 25 48 48 H 1.08997 * 113.59641 * 88.79450 * 27 26 25 49 49 H 1.09003 * 113.55955 * 268.62694 * 28 25 2 50 50 H 1.08994 * 113.56363 * 39.36413 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7099 0.0011 7 6 1.3069 4.8727 -0.0053 8 1 0.7368 4.8685 0.9237 9 7 0.3896 4.7265 -1.1434 10 6 1.1147 4.8104 -2.4181 11 6 0.1333 4.7430 -3.5597 12 8 -1.0536 4.6350 -3.3336 13 7 0.5743 4.8015 -4.8320 14 6 -0.3186 4.7396 -5.8705 15 1 -1.3753 4.6435 -5.6692 16 6 0.1360 4.8004 -7.1821 17 7 -0.7198 4.7416 -8.1776 18 14 1.9637 4.9674 -7.5303 19 1 2.5712 3.6171 -7.6447 20 1 2.1597 5.7076 -8.8027 21 1 2.6133 5.7100 -6.4205 22 6 2.0682 6.1940 -0.1305 23 6 2.1833 7.0644 1.1225 24 6 1.2596 7.4884 -0.0221 25 6 2.1720 -1.1517 -0.0005 26 6 3.6250 -1.5771 -0.0074 27 6 3.1708 -2.8815 -0.6743 28 6 1.8138 -2.6228 -0.0007 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 0.5986 2.4411 -0.0031 33 1 2.9241 3.7694 0.8935 34 1 2.9315 3.7659 -0.8865 35 1 -0.3498 5.4119 -1.1022 36 1 1.6612 5.7525 -2.4640 37 1 1.8162 3.9794 -2.4925 38 1 1.5234 4.8874 -5.0128 39 1 -0.4024 4.7837 -9.0932 40 1 2.9149 6.1855 -0.8169 41 1 1.7163 6.6960 2.0359 42 1 3.1056 7.6289 1.2602 43 1 1.5745 8.3314 -0.6370 44 1 0.1851 7.3986 0.1380 45 1 4.2566 -0.9599 -0.6464 46 1 4.0421 -1.7196 0.9895 47 1 3.6835 -3.7696 -0.3048 48 1 3.1399 -2.8274 -1.7625 49 1 1.7344 -3.0520 0.9981 50 1 0.9600 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317014220.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:59 Heat of formation + Delta-G solvation = -5.548978 kcal Electronic energy + Delta-G solvation = -29188.686661 eV Core-core repulsion = 25217.825399 eV Total energy + Delta-G solvation = -3970.861261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11360 -39.20498 -38.29780 -37.86847 -35.23441 -34.13464 -33.66516 -32.84509 -31.66241 -29.16088 -26.75652 -26.63720 -25.64731 -24.33075 -23.60649 -22.51012 -22.30660 -20.49748 -20.13820 -19.32395 -18.53181 -18.09747 -16.89270 -16.50384 -16.13743 -15.71810 -15.47378 -15.36356 -14.99114 -14.90051 -14.67639 -14.15033 -13.92106 -13.79161 -13.55371 -13.17108 -13.05301 -12.62917 -12.58182 -12.49689 -12.33690 -12.28936 -12.07670 -11.91783 -11.86983 -11.73299 -11.70271 -11.22668 -11.13071 -11.03856 -10.62081 -10.59503 -10.47835 -10.35113 -9.98298 -9.62712 -9.57707 -9.08268 -8.79473 -8.60648 -8.26005 -8.17762 -6.31930 -3.83238 1.31932 3.02572 3.07651 3.15068 3.16389 3.34738 3.57858 3.74508 4.09514 4.15320 4.26493 4.35256 4.43956 4.57198 4.64557 4.76489 4.85007 4.92467 4.94138 5.01428 5.15513 5.19842 5.22198 5.27416 5.39198 5.46400 5.46600 5.53784 5.58590 5.61397 5.68650 5.70308 5.74568 5.76985 5.82947 5.83830 5.92913 5.93753 5.95442 6.03953 6.07769 6.21402 6.51001 6.60133 7.00588 7.49230 7.57178 7.68020 8.13597 8.34538 8.58670 8.94000 9.41912 9.81550 10.81130 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003577 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.033574 B = 7825.413362 C =10267.423868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.160 4.160 3 C 0.555 3.445 4 O -0.551 6.551 5 N -0.711 5.711 6 C 0.132 3.868 7 C 0.105 3.895 8 H 0.090 0.910 9 N -0.656 5.656 10 C 0.044 3.956 11 C 0.451 3.549 12 O -0.567 6.567 13 N -0.590 5.590 14 C -0.305 4.305 15 H 0.120 0.880 16 C 0.043 3.957 17 N -0.881 5.881 18 Si 0.878 3.122 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.270 1.270 22 C -0.189 4.189 23 C -0.172 4.172 24 C -0.173 4.173 25 C -0.075 4.075 26 C -0.101 4.101 27 C -0.142 4.142 28 C -0.105 4.105 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.355 0.645 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -6.328 20.390 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.163 4.163 3 C 0.344 3.656 4 O -0.430 6.430 5 N -0.363 5.363 6 C 0.008 3.992 7 C -0.006 4.006 8 H 0.108 0.892 9 N -0.288 5.288 10 C -0.089 4.089 11 C 0.236 3.764 12 O -0.450 6.450 13 N -0.229 5.229 14 C -0.433 4.433 15 H 0.137 0.863 16 C -0.160 4.160 17 N -0.521 5.521 18 Si 0.704 3.296 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.195 1.195 22 C -0.209 4.209 23 C -0.210 4.210 24 C -0.210 4.210 25 C -0.077 4.077 26 C -0.138 4.138 27 C -0.180 4.180 28 C -0.142 4.142 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.176 0.824 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.177 -7.073 20.300 23.000 hybrid contribution 1.226 1.268 -0.720 1.905 sum 9.404 -5.805 19.579 22.483 Atomic orbital electron populations 1.20687 0.90300 1.02646 1.03048 1.20472 0.95987 0.91259 1.08604 1.18230 0.87097 0.83949 0.76349 1.90747 1.13600 1.87886 1.50804 1.45753 1.11240 1.04785 1.74533 1.21287 0.93796 0.81981 1.02147 1.21483 0.92852 0.90853 0.95446 0.89195 1.60333 1.11875 1.56595 0.99969 1.21750 0.96367 1.01126 0.89612 1.19712 0.89408 0.83929 0.83304 1.90556 1.16846 1.53673 1.83883 1.42207 1.08443 1.66472 1.05774 1.19422 0.92721 1.47650 0.83554 0.86271 1.25024 0.98100 0.97622 0.95302 1.69618 1.33983 1.49274 0.99231 0.86700 0.85105 0.78993 0.78770 1.19563 1.20149 1.19545 1.23027 1.03114 0.92724 1.02046 1.22956 1.01756 1.03539 0.92772 1.22923 0.98194 0.97680 1.02215 1.23178 0.97957 0.93659 0.92924 1.22145 0.94139 0.95915 1.01604 1.22720 0.96652 0.98060 1.00542 1.22278 0.98615 0.91749 1.01580 0.90607 0.91427 0.91426 0.75205 0.91208 0.91526 0.82410 0.93145 0.89598 0.79731 0.91612 0.87509 0.88697 0.88906 0.88643 0.88530 0.89716 0.88809 0.90599 0.89706 0.88443 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.57 36.01 0.34 -0.75 16 2 C -0.16 -1.97 6.00 -102.85 -0.62 -2.58 16 3 C 0.56 7.93 7.75 -12.67 -0.10 7.84 16 4 O -0.55 -9.37 15.15 5.26 0.08 -9.29 16 5 N -0.71 -8.88 5.33 -61.49 -0.33 -9.21 16 6 C 0.13 1.56 4.76 -4.04 -0.02 1.54 16 7 C 0.10 1.11 2.81 -67.71 -0.19 0.92 16 8 H 0.09 0.85 7.95 -51.93 -0.41 0.43 16 9 N -0.66 -9.03 5.55 -107.99 -0.60 -9.63 16 10 C 0.04 0.71 5.50 -4.98 -0.03 0.68 16 11 C 0.45 10.02 7.81 -10.98 -0.09 9.94 16 12 O -0.57 -14.72 15.70 5.54 0.09 -14.63 16 13 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 14 C -0.30 -8.62 10.16 -14.94 -0.15 -8.77 16 15 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 16 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 17 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 18 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.52 6.52 56.52 0.37 -5.16 16 22 C -0.19 -1.86 3.80 -90.62 -0.34 -2.20 16 23 C -0.17 -1.44 10.18 -26.69 -0.27 -1.71 16 24 C -0.17 -1.65 10.04 -26.69 -0.27 -1.92 16 25 C -0.08 -0.85 6.59 -100.49 -0.66 -1.52 16 26 C -0.10 -1.08 6.99 -27.56 -0.19 -1.28 16 27 C -0.14 -1.21 8.17 -26.19 -0.21 -1.42 16 28 C -0.11 -0.88 7.72 -27.40 -0.21 -1.09 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 31 H 0.07 0.61 6.71 -51.93 -0.35 0.26 16 32 H 0.41 4.83 6.24 -40.82 -0.25 4.57 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.88 6.82 -51.93 -0.35 0.52 16 35 H 0.36 5.16 8.18 -39.29 -0.32 4.84 16 36 H 0.05 0.74 6.58 -51.93 -0.34 0.39 16 37 H 0.09 1.36 6.68 -51.93 -0.35 1.02 16 38 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.11 1.10 7.70 -51.93 -0.40 0.71 16 41 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -33.42 405.82 -9.76 -43.18 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -8.02 Total: 18.93 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.11 Total: -1.25 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.21 Total: -57.96 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.42 -9.76 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317014220.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.631 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds