Wall clock time and date at job start Tue Mar 31 2020 19:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47096 * 119.99654 * 2 1 4 4 O 1.21615 * 119.99716 * 179.97438 * 3 2 1 5 5 N 1.34769 * 120.00488 * 0.02562 * 3 2 1 6 6 C 1.46504 * 120.00247 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47085 * 179.72655 * 6 5 3 8 8 H 1.09000 * 109.47618 * 64.99998 * 7 6 5 9 9 N 1.46906 * 109.47082 * 304.99780 * 7 6 5 10 10 C 1.46896 * 111.00058 * 296.53352 * 9 7 6 11 11 C 1.50701 * 109.47029 * 183.51168 * 10 9 7 12 12 O 1.21296 * 120.00160 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99951 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99824 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99976 * 359.97438 * 14 13 11 16 16 C 1.38941 * 119.99883 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00333 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00054 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47001 * 90.00197 * 18 16 14 20 20 H 1.48507 * 109.47136 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47201 * 329.99927 * 18 16 14 22 22 C 1.53004 * 109.47136 * 185.00424 * 7 6 5 23 23 C 1.52999 * 117.49532 * 254.30600 * 22 7 6 24 24 C 1.53005 * 117.50028 * 185.64909 * 22 7 6 25 25 C 1.32993 * 120.00140 * 180.02562 * 2 1 3 26 26 C 1.51400 * 136.31874 * 179.63239 * 25 2 1 27 27 C 1.53377 * 87.51890 * 206.05276 * 26 25 2 28 28 C 1.51405 * 136.31313 * 359.97438 * 25 2 1 29 29 H 1.08999 * 109.47115 * 90.00207 * 1 2 3 30 30 H 1.09003 * 109.47022 * 210.00332 * 1 2 3 31 31 H 1.09001 * 109.46862 * 329.99850 * 1 2 3 32 32 H 0.97006 * 120.00195 * 359.72468 * 5 3 2 33 33 H 1.09000 * 109.47216 * 299.72512 * 6 5 3 34 34 H 1.09003 * 109.47202 * 59.72979 * 6 5 3 35 35 H 1.00907 * 110.99802 * 172.58263 * 9 7 6 36 36 H 1.09003 * 109.47296 * 303.51269 * 10 9 7 37 37 H 1.09005 * 109.47102 * 63.51291 * 10 9 7 38 38 H 0.96993 * 119.99866 * 359.97438 * 13 11 10 39 39 H 0.97000 * 120.00377 * 180.02562 * 17 16 14 40 40 H 1.08994 * 115.55246 * 39.97177 * 22 7 6 41 41 H 1.08999 * 117.50164 * 359.97438 * 23 22 7 42 42 H 1.09004 * 117.50074 * 145.01826 * 23 22 7 43 43 H 1.08998 * 117.49478 * 214.97849 * 24 22 7 44 44 H 1.09002 * 117.49649 * 359.97438 * 24 22 7 45 45 H 1.09002 * 113.55660 * 320.63485 * 26 25 2 46 46 H 1.09002 * 113.56191 * 91.36308 * 26 25 2 47 47 H 1.08996 * 113.96780 * 220.29041 * 27 26 25 48 48 H 1.08997 * 113.59641 * 88.79450 * 27 26 25 49 49 H 1.09003 * 113.55955 * 268.62694 * 28 25 2 50 50 H 1.08994 * 113.56363 * 39.36413 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7099 0.0011 7 6 1.3069 4.8727 -0.0053 8 1 0.7368 4.8685 0.9237 9 7 0.3896 4.7265 -1.1434 10 6 1.1147 4.8104 -2.4181 11 6 0.1333 4.7430 -3.5597 12 8 -1.0536 4.6350 -3.3336 13 7 0.5743 4.8015 -4.8320 14 6 -0.3186 4.7396 -5.8705 15 1 -1.3753 4.6435 -5.6692 16 6 0.1360 4.8004 -7.1821 17 7 -0.7198 4.7416 -8.1776 18 14 1.9637 4.9674 -7.5303 19 1 2.5712 3.6171 -7.6447 20 1 2.1597 5.7076 -8.8027 21 1 2.6133 5.7100 -6.4205 22 6 2.0682 6.1940 -0.1305 23 6 2.1833 7.0644 1.1225 24 6 1.2596 7.4884 -0.0221 25 6 2.1720 -1.1517 -0.0005 26 6 3.6250 -1.5771 -0.0074 27 6 3.1708 -2.8815 -0.6743 28 6 1.8138 -2.6228 -0.0007 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 0.5986 2.4411 -0.0031 33 1 2.9241 3.7694 0.8935 34 1 2.9315 3.7659 -0.8865 35 1 -0.3498 5.4119 -1.1022 36 1 1.6612 5.7525 -2.4640 37 1 1.8162 3.9794 -2.4925 38 1 1.5234 4.8874 -5.0128 39 1 -0.4024 4.7837 -9.0932 40 1 2.9149 6.1855 -0.8169 41 1 1.7163 6.6960 2.0359 42 1 3.1056 7.6289 1.2602 43 1 1.5745 8.3314 -0.6370 44 1 0.1851 7.3986 0.1380 45 1 4.2566 -0.9599 -0.6464 46 1 4.0421 -1.7196 0.9895 47 1 3.6835 -3.7696 -0.3048 48 1 3.1399 -2.8274 -1.7625 49 1 1.7344 -3.0520 0.9981 50 1 0.9600 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317014220.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:58 Heat of formation + Delta-G solvation = -29.493440 kcal Electronic energy + Delta-G solvation = -29189.724970 eV Core-core repulsion = 25217.825399 eV Total energy + Delta-G solvation = -3971.899571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13418 -40.47177 -39.52532 -38.95344 -36.28576 -35.95765 -34.84629 -33.83544 -33.71046 -30.30989 -28.17687 -27.46547 -26.41413 -25.96613 -24.65336 -23.21794 -23.11294 -21.66486 -21.28938 -20.87738 -20.20605 -19.10925 -18.30881 -17.46414 -17.18463 -17.05089 -16.59264 -16.51360 -16.28357 -16.00677 -15.86926 -15.44571 -15.09126 -15.00207 -14.79264 -14.53505 -14.32244 -14.10143 -13.83419 -13.54352 -13.32286 -13.29828 -13.17042 -13.02220 -12.87730 -12.82182 -12.46076 -12.44459 -12.40656 -12.05932 -12.01055 -11.87350 -11.54151 -11.43643 -11.22571 -11.12923 -10.63680 -10.45304 -10.26215 -10.10436 -9.68512 -9.40880 -8.43293 -6.03291 0.39497 1.26774 1.31875 1.39869 1.93080 2.19032 2.19713 2.32849 2.68864 2.92453 3.13282 3.37503 3.45474 3.57782 3.64234 3.82884 3.89608 4.03606 4.07971 4.13194 4.15894 4.24116 4.29585 4.38259 4.43565 4.46381 4.53356 4.69790 4.74561 4.76260 4.80093 4.81269 4.84885 4.94124 4.99784 5.04393 5.04685 5.09483 5.23245 5.26881 5.37394 5.38230 5.47901 5.52061 5.75809 5.86751 5.98450 6.34562 6.57152 6.66014 6.86076 7.29947 7.37749 7.92899 8.74140 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003577 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.033574 B = 7825.413362 C =10267.423868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.184 4.184 3 C 0.546 3.454 4 O -0.586 6.586 5 N -0.705 5.705 6 C 0.133 3.867 7 C 0.117 3.883 8 H 0.109 0.891 9 N -0.663 5.663 10 C 0.063 3.937 11 C 0.452 3.548 12 O -0.608 6.608 13 N -0.593 5.593 14 C -0.326 4.326 15 H 0.060 0.940 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.957 3.043 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.235 1.235 22 C -0.199 4.199 23 C -0.154 4.154 24 C -0.181 4.181 25 C -0.083 4.083 26 C -0.109 4.109 27 C -0.135 4.135 28 C -0.095 4.095 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.352 0.648 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.386 0.614 39 H 0.279 0.721 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.121 0.879 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.420 -6.651 22.296 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.187 4.187 3 C 0.336 3.664 4 O -0.469 6.469 5 N -0.357 5.357 6 C 0.008 3.992 7 C 0.007 3.993 8 H 0.127 0.873 9 N -0.295 5.295 10 C -0.069 4.069 11 C 0.240 3.760 12 O -0.492 6.492 13 N -0.235 5.235 14 C -0.455 4.455 15 H 0.078 0.922 16 C -0.210 4.210 17 N -0.572 5.572 18 Si 0.778 3.222 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.158 1.158 22 C -0.219 4.219 23 C -0.192 4.192 24 C -0.218 4.218 25 C -0.085 4.085 26 C -0.146 4.146 27 C -0.172 4.172 28 C -0.131 4.131 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.173 0.827 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.221 0.779 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.096 0.904 49 H 0.139 0.861 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.392 -7.379 22.240 25.634 hybrid contribution 0.447 1.349 -1.227 1.878 sum 10.840 -6.031 21.013 24.401 Atomic orbital electron populations 1.20664 0.88866 1.03943 1.02588 1.20600 0.97019 0.90713 1.10364 1.18668 0.86886 0.85021 0.75793 1.90720 1.15017 1.88434 1.52726 1.45772 1.11397 1.04788 1.73703 1.21333 0.93963 0.81984 1.01882 1.21450 0.92290 0.90908 0.94635 0.87345 1.60306 1.12450 1.56910 0.99823 1.21560 0.94609 1.02666 0.88083 1.20871 0.89934 0.81110 0.84105 1.90536 1.19319 1.54655 1.84674 1.42068 1.08571 1.67390 1.05432 1.19013 0.91157 1.49676 0.85661 0.92211 1.26007 1.04441 0.96299 0.94238 1.69786 1.37171 1.50290 1.00001 0.85468 0.77292 0.79773 0.79667 1.18575 1.19703 1.15843 1.22943 1.03153 0.92214 1.03591 1.23034 1.01701 1.02051 0.92414 1.22957 0.98319 0.97307 1.03208 1.23683 0.98643 0.95103 0.91067 1.22247 0.93564 0.96881 1.01927 1.22698 0.96775 0.97650 1.00056 1.22347 0.98669 0.89158 1.02939 0.91843 0.89516 0.90810 0.74783 0.90431 0.92873 0.82736 0.90682 0.88755 0.77857 0.91143 0.87744 0.87519 0.87935 0.88769 0.88728 0.92520 0.87759 0.88264 0.90439 0.86103 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.57 71.24 0.68 -1.30 16 2 C -0.18 -4.43 6.00 -18.70 -0.11 -4.54 16 3 C 0.55 15.57 7.75 86.57 0.67 16.24 16 4 O -0.59 -20.20 15.15 -4.08 -0.06 -20.26 16 5 N -0.71 -17.10 5.33 -466.72 -2.49 -19.59 16 6 C 0.13 2.93 4.76 86.38 0.41 3.34 16 7 C 0.12 2.24 2.81 44.91 0.13 2.36 16 8 H 0.11 1.74 7.95 -2.39 -0.02 1.72 16 9 N -0.66 -17.42 5.55 -495.56 -2.75 -20.17 16 10 C 0.06 1.95 5.50 85.56 0.47 2.42 16 11 C 0.45 20.20 7.81 87.66 0.68 20.89 16 12 O -0.61 -32.51 15.70 -3.08 -0.05 -32.56 16 13 N -0.59 -28.33 5.09 -306.98 -1.56 -29.90 16 14 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 15 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 16 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 17 N -0.93 -56.30 13.96 21.66 0.30 -56.00 16 18 Si 0.96 39.77 27.74 68.60 1.90 41.67 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.23 -8.36 6.52 99.48 0.65 -7.71 16 22 C -0.20 -3.42 3.80 -10.79 -0.04 -3.46 16 23 C -0.15 -2.11 10.18 30.62 0.31 -1.80 16 24 C -0.18 -3.04 10.04 30.62 0.31 -2.74 16 25 C -0.08 -1.81 6.59 -17.17 -0.11 -1.92 16 26 C -0.11 -2.28 6.99 30.06 0.21 -2.07 16 27 C -0.13 -2.04 8.17 30.95 0.25 -1.79 16 28 C -0.09 -1.36 7.72 30.16 0.23 -1.12 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.28 7.91 -2.39 -0.02 1.27 16 31 H 0.07 1.27 6.71 -2.39 -0.02 1.25 16 32 H 0.41 9.39 6.24 -92.70 -0.58 8.81 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.34 6.82 -2.39 -0.02 1.32 16 35 H 0.35 9.90 8.18 -89.69 -0.73 9.17 16 36 H 0.08 2.00 6.58 -2.39 -0.02 1.98 16 37 H 0.09 2.84 6.68 -2.38 -0.02 2.82 16 38 H 0.39 15.75 5.76 -92.71 -0.53 15.22 16 39 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.10 1.89 7.70 -2.39 -0.02 1.87 16 41 H 0.11 1.23 8.08 -2.39 -0.02 1.21 16 42 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.49 7.49 -2.39 -0.02 1.48 16 46 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.58 405.82 -0.22 -77.80 By element: Atomic # 1 Polarization: 53.84 SS G_CDS: -0.93 Total: 52.91 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.41 Total: 6.10 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -6.50 Total: -125.66 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.90 Total: 41.67 kcal Total: -77.58 -0.22 -77.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317014220.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.304 kcal (2) G-P(sol) polarization free energy of solvation -77.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds