Wall clock time and date at job start Tue Mar 31 2020 19:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46573 * 2 1 4 4 C 1.35316 * 126.66102 * 90.00341 * 3 2 1 5 5 C 1.42278 * 103.91726 * 179.75655 * 4 3 2 6 6 C 1.48329 * 126.93412 * 180.21799 * 5 4 3 7 7 O 1.21498 * 120.00390 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99954 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00356 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46718 * 325.00248 * 9 8 6 11 11 C 1.53004 * 109.47076 * 205.00558 * 9 8 6 12 12 N 1.46503 * 109.47226 * 54.99926 * 11 9 8 13 13 C 1.36937 * 119.99773 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99918 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99802 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00052 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99891 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47575 * 89.99935 * 17 15 13 19 19 H 1.48507 * 109.46900 * 210.00014 * 17 15 13 20 20 H 1.48504 * 109.47197 * 329.99527 * 17 15 13 21 21 C 1.52997 * 109.46979 * 85.00583 * 9 8 6 22 22 C 1.52998 * 109.47258 * 59.99869 * 21 9 8 23 23 C 1.52998 * 109.46907 * 180.02562 * 22 21 9 24 24 C 1.52997 * 109.47507 * 60.00342 * 23 22 21 25 25 C 1.52998 * 109.46758 * 299.99749 * 24 23 22 26 26 C 1.52997 * 109.47258 * 60.00004 * 25 24 23 27 27 N 1.30984 * 106.12493 * 0.23766 * 5 4 3 28 28 O 1.20904 * 111.43952 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47581 * 299.99657 * 1 2 3 31 31 H 1.08996 * 109.47441 * 60.00215 * 1 2 3 32 32 H 1.08992 * 109.47141 * 240.00504 * 2 1 3 33 33 H 1.08997 * 109.47246 * 120.00300 * 2 1 3 34 34 H 1.08002 * 128.04455 * 0.02562 * 4 3 2 35 35 H 0.97007 * 119.99659 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46967 * 174.99996 * 11 9 8 37 37 H 1.09003 * 109.47057 * 294.99545 * 11 9 8 38 38 H 0.97000 * 119.99721 * 0.02562 * 12 11 9 39 39 H 0.97001 * 120.00684 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47203 * 180.02562 * 21 9 8 41 41 H 1.08997 * 109.47386 * 300.00345 * 22 21 9 42 42 H 1.09004 * 109.47035 * 60.00236 * 22 21 9 43 43 H 1.09004 * 109.47222 * 299.99613 * 23 22 21 44 44 H 1.09006 * 109.47075 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47364 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46894 * 59.99710 * 24 23 22 47 47 H 1.08997 * 109.47386 * 299.99659 * 25 24 23 48 48 H 1.09004 * 109.47035 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47669 * 179.97438 * 26 25 24 50 50 H 1.09007 * 109.47187 * 59.99680 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3015 2.1826 1.0855 5 6 2.7443 3.4178 0.5354 6 6 3.1776 4.6227 1.2843 7 8 3.1769 4.6157 2.4992 8 7 3.5730 5.7249 0.6170 9 6 4.0004 6.9151 1.3565 10 1 3.4083 7.0093 2.2667 11 6 3.7980 8.1567 0.4856 12 7 2.4046 8.2167 0.0371 13 6 1.9857 9.2486 -0.7597 14 1 2.6824 10.0183 -1.0571 15 6 0.6653 9.3058 -1.1842 16 7 0.2625 10.2978 -1.9496 17 14 -0.5402 7.9755 -0.6680 18 1 -1.1933 8.3669 0.6069 19 1 -1.5728 7.8071 -1.7219 20 1 0.1872 6.6947 -0.4787 21 6 5.4803 6.7842 1.7220 22 6 6.3115 6.6519 0.4442 23 6 7.7913 6.5204 0.8098 24 6 7.9933 5.2786 1.6803 25 6 7.1621 5.4109 2.9581 26 6 5.6823 5.5424 2.5926 27 7 2.6916 3.2763 -0.7657 28 8 2.2967 2.1763 -1.0750 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2070 1.9139 2.1272 35 1 3.5739 5.7303 -0.3531 36 1 4.0318 9.0494 1.0657 37 1 4.4568 8.1038 -0.3812 38 1 1.7787 7.5259 0.3052 39 1 -0.6602 10.3380 -2.2460 40 1 5.7983 7.6695 2.2726 41 1 5.9934 5.7664 -0.1060 42 1 6.1673 7.5365 -0.1762 43 1 8.1097 7.4058 1.3602 44 1 8.3835 6.4266 -0.1005 45 1 9.0476 5.1847 1.9404 46 1 7.6749 4.3933 1.1299 47 1 7.4805 6.2961 3.5086 48 1 7.3057 4.5259 3.5781 49 1 5.0901 5.6362 3.5028 50 1 5.3639 4.6570 2.0421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319663898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:43 Heat of formation + Delta-G solvation = -7.109535 kcal Electronic energy + Delta-G solvation = -30331.031768 eV Core-core repulsion = 26360.102836 eV Total energy + Delta-G solvation = -3970.928932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.21548 -41.54226 -39.26604 -37.39485 -35.89793 -35.50078 -34.96996 -33.36684 -32.28405 -31.64121 -31.13008 -29.06258 -26.40325 -25.28574 -24.92868 -23.95749 -23.56445 -22.96655 -21.75183 -21.13764 -20.47043 -19.82774 -18.95132 -18.53517 -17.99069 -17.30410 -16.97426 -16.39743 -16.04039 -15.82077 -15.51032 -15.45016 -15.07352 -15.03938 -14.96979 -14.76785 -14.51819 -14.39312 -14.03589 -13.77367 -13.57306 -13.52355 -13.04529 -12.94248 -12.90811 -12.66801 -12.43912 -12.40387 -12.13804 -12.06651 -11.98195 -11.88270 -11.87420 -11.58049 -11.53341 -11.35242 -11.17378 -11.08252 -10.78602 -10.51005 -10.09594 -9.36817 -8.09465 -5.42016 0.00252 0.61562 1.27992 1.28819 1.35135 1.77145 1.99076 2.04121 2.38546 2.83955 3.22978 3.34800 3.46873 3.67735 3.79850 3.87016 3.90206 4.02534 4.08149 4.15790 4.20752 4.32437 4.40500 4.41669 4.42914 4.46607 4.60871 4.64872 4.67081 4.69727 4.76070 4.80825 4.94743 4.97842 5.03168 5.06346 5.11198 5.16567 5.20788 5.27181 5.29430 5.33234 5.37194 5.42861 5.50066 5.59184 5.70357 6.14450 6.23300 6.84781 6.99737 7.01122 7.75368 7.92810 9.11988 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006435 B = 0.005575 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4350.287559 B = 5021.391669 C = 8572.532899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.017 4.017 4 C -0.192 4.192 5 C -0.051 4.051 6 C 0.596 3.404 7 O -0.542 6.542 8 N -0.695 5.695 9 C 0.147 3.853 10 H 0.077 0.923 11 C 0.146 3.854 12 N -0.758 5.758 13 C -0.230 4.230 14 H 0.067 0.933 15 C -0.052 4.052 16 N -0.977 5.977 17 Si 0.944 3.056 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.270 1.270 21 C -0.085 4.085 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.098 4.098 27 N -0.353 5.353 28 O 0.124 5.876 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.195 0.805 35 H 0.407 0.593 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -23.791 7.872 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.076 4.076 3 C -0.080 4.080 4 C -0.215 4.215 5 C -0.208 4.208 6 C 0.380 3.620 7 O -0.419 6.419 8 N -0.345 5.345 9 C 0.043 3.957 10 H 0.095 0.905 11 C 0.020 3.980 12 N -0.404 5.404 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.628 5.628 17 Si 0.773 3.227 18 H -0.207 1.207 19 H -0.218 1.218 20 H -0.195 1.195 21 C -0.105 4.105 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.136 4.136 27 N -0.053 5.053 28 O 0.047 5.953 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.212 0.788 35 H 0.243 0.757 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.194 0.806 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.675 -22.679 7.642 26.628 hybrid contribution -1.426 -0.353 0.222 1.486 sum 10.249 -23.033 7.863 26.408 Atomic orbital electron populations 1.21840 0.93189 1.04024 1.02114 1.20440 0.96644 0.83334 1.07154 1.25314 1.00334 0.98250 0.84130 1.22657 1.05414 0.90702 1.02692 1.23653 1.07870 0.98728 0.90586 1.17004 0.76985 0.81603 0.86375 1.90756 1.55240 1.82936 1.12923 1.45898 1.64907 1.12749 1.10955 1.21370 0.96556 0.82956 0.94860 0.90538 1.21197 0.85071 0.95154 0.96535 1.42729 1.08174 1.28380 1.61093 1.19054 0.94537 1.01270 1.21186 0.91475 1.25300 0.98757 0.99918 1.00482 1.69835 1.17181 1.34287 1.41459 0.85583 0.79565 0.80081 0.77482 1.20741 1.21761 1.19535 1.21480 0.91832 0.99826 0.97352 1.21609 0.95616 1.01556 0.96421 1.21502 0.95088 0.98587 0.99936 1.21508 1.00069 0.97701 0.95994 1.21537 0.94060 1.02042 0.97622 1.21509 0.96698 0.96640 0.98748 1.74229 1.14783 1.00401 1.15911 1.84751 1.59240 1.16925 1.34393 0.88796 0.92776 0.93191 0.87140 0.85723 0.78781 0.75730 0.93208 0.93480 0.80610 0.93240 0.88819 0.93260 0.91576 0.91103 0.91457 0.90730 0.93334 0.91169 0.91975 0.92825 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.04 -0.33 6.50 29.85 0.19 -0.13 16 3 C -0.02 -0.32 6.73 25.01 0.17 -0.15 16 4 C -0.19 -4.40 10.92 22.60 0.25 -4.15 16 5 C -0.05 -1.53 7.19 42.96 0.31 -1.22 16 6 C 0.60 19.94 6.20 86.93 0.54 20.48 16 7 O -0.54 -19.44 14.07 -3.71 -0.05 -19.49 16 8 N -0.69 -22.86 3.64 -444.94 -1.62 -24.48 16 9 C 0.15 4.68 2.16 44.99 0.10 4.78 16 10 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 11 C 0.15 5.44 5.60 86.38 0.48 5.93 16 12 N -0.76 -36.04 5.24 -343.43 -1.80 -37.84 16 13 C -0.23 -13.17 10.47 84.03 0.88 -12.29 16 14 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 15 C -0.05 -3.14 5.50 84.86 0.47 -2.68 16 16 N -0.98 -63.09 13.97 21.65 0.30 -62.78 16 17 Si 0.94 47.96 27.74 68.60 1.90 49.86 16 18 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 19 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 20 H -0.27 -13.08 6.52 99.48 0.65 -12.43 16 21 C -0.09 -2.18 2.07 -10.79 -0.02 -2.20 16 22 C -0.11 -2.72 4.70 30.59 0.14 -2.58 16 23 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 24 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 25 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 26 C -0.10 -2.52 3.73 30.59 0.11 -2.40 16 27 N -0.35 -10.80 11.84 -49.52 -0.59 -11.39 16 28 O 0.12 3.09 11.18 71.88 0.80 3.89 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.20 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.41 13.85 8.36 -92.70 -0.78 13.08 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.71 6.17 -2.39 -0.01 1.70 16 38 H 0.36 17.29 5.20 -92.71 -0.48 16.81 16 39 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.28 7.60 -2.39 -0.02 1.26 16 42 H 0.07 1.64 6.32 -2.38 -0.02 1.63 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16 50 H 0.04 1.21 5.77 -2.38 -0.01 1.20 16 Total: -1.00 -72.63 392.64 3.47 -69.16 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.36 Total: 36.48 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.88 Total: -3.41 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -3.70 Total: -136.49 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.75 Total: -15.60 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.90 Total: 49.86 kcal Total: -72.63 3.47 -69.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319663898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.050 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds