Wall clock time and date at job start Tue Mar 31 2020 19:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47067 * 2 1 4 4 C 1.38361 * 120.26689 * 270.01715 * 3 2 1 5 5 N 1.31876 * 121.18230 * 179.97438 * 4 3 2 6 6 C 1.32241 * 121.80270 * 359.74841 * 5 4 3 7 7 O 1.35421 * 119.79962 * 180.26610 * 6 5 4 8 8 C 1.40276 * 120.39805 * 0.53935 * 6 5 4 9 9 C 1.47527 * 120.59602 * 179.72327 * 8 6 5 10 10 O 1.21590 * 119.99889 * 359.72309 * 9 8 6 11 11 N 1.34773 * 119.99866 * 179.72260 * 9 8 6 12 12 C 1.46498 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47272 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 12 16 16 N 1.46505 * 109.46807 * 65.00478 * 14 13 12 17 17 C 1.36931 * 119.99788 * 205.00000 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.52996 * 109.47332 * 185.00423 * 14 13 12 26 26 C 1.52998 * 109.47178 * 60.00127 * 25 14 13 27 27 C 1.52998 * 109.47309 * 180.02562 * 25 14 13 28 28 C 1.38329 * 120.27298 * 89.99753 * 3 2 1 29 29 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47403 * 300.00642 * 1 2 3 31 31 H 1.09002 * 109.47197 * 60.00353 * 1 2 3 32 32 H 1.08994 * 109.47308 * 239.99270 * 2 1 3 33 33 H 1.09009 * 109.46830 * 119.99624 * 2 1 3 34 34 H 1.07997 * 119.40530 * 359.97438 * 4 3 2 35 35 H 0.96706 * 114.00342 * 270.27016 * 7 6 5 36 36 H 0.97004 * 120.00109 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.46784 * 60.00269 * 12 11 9 38 38 H 1.08992 * 109.47427 * 300.00334 * 12 11 9 39 39 H 1.09000 * 109.46766 * 60.00541 * 13 12 11 40 40 H 1.08992 * 109.47398 * 300.00634 * 13 12 11 41 41 H 0.97000 * 119.99792 * 24.99795 * 16 14 13 42 42 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.46807 * 300.00318 * 25 14 13 44 44 H 1.09000 * 109.46863 * 59.99636 * 26 25 14 45 45 H 1.08994 * 109.47323 * 180.02562 * 26 25 14 46 46 H 1.08998 * 109.47238 * 300.00077 * 26 25 14 47 47 H 1.09003 * 109.47086 * 59.99982 * 27 25 14 48 48 H 1.08994 * 109.46999 * 179.97438 * 27 25 14 49 49 H 1.09000 * 109.46698 * 300.00343 * 27 25 14 50 50 H 1.08003 * 120.82599 * 0.04433 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0785 -1.1950 5 7 2.7035 3.3218 -1.2161 6 6 2.9369 3.9974 -0.1035 7 8 3.3822 5.2744 -0.1725 8 6 2.7314 3.3973 1.1477 9 6 2.9962 4.1450 2.3916 10 8 3.4011 5.2902 2.3381 11 7 2.7893 3.5585 3.5873 12 6 3.0527 4.3007 4.8225 13 6 2.7384 3.4126 6.0281 14 6 3.0129 4.1879 7.3182 15 1 4.0375 4.5598 7.3076 16 7 2.0846 5.3171 7.4162 17 6 2.4236 6.4200 8.1536 18 1 3.3754 6.4577 8.6626 19 6 1.5464 7.4923 8.2418 20 7 1.8745 8.5547 8.9461 21 14 -0.0995 7.4275 7.3608 22 1 -1.1210 6.8380 8.2632 23 1 -0.5108 8.8022 6.9785 24 1 0.0249 6.5906 6.1404 25 6 2.8187 3.2622 8.5208 26 6 3.7882 2.0830 8.4184 27 6 3.0927 4.0377 9.8109 28 6 2.2647 2.0783 1.1947 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0828 1.5643 -2.1272 35 1 4.3457 5.3544 -0.1951 36 1 2.4659 2.6450 3.6299 37 1 2.4235 5.1902 4.8531 38 1 4.1014 4.5963 4.8522 39 1 3.3673 2.5228 5.9977 40 1 1.6896 3.1173 5.9983 41 1 1.2300 5.2834 6.9587 42 1 1.2615 9.3038 9.0081 43 1 1.7941 2.8904 8.5313 44 1 4.8127 2.4548 8.4078 45 1 3.6495 1.4233 9.2749 46 1 3.5926 1.5306 7.4994 47 1 2.4017 4.8776 9.8836 48 1 2.9539 3.3783 10.6676 49 1 4.1171 4.4099 9.8005 50 1 2.0914 1.5860 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331223916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:32 Heat of formation + Delta-G solvation = -73.132534 kcal Electronic energy + Delta-G solvation = -29053.640273 eV Core-core repulsion = 25079.848369 eV Total energy + Delta-G solvation = -3973.791904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99488 -40.28582 -39.04934 -38.40013 -36.07085 -35.20869 -34.92965 -33.75025 -32.82395 -31.36221 -30.06322 -27.75470 -27.18594 -25.66709 -25.00281 -24.39410 -23.02744 -22.43964 -21.51613 -20.91613 -19.95854 -19.43348 -18.43927 -18.30144 -17.19709 -17.01079 -16.69402 -16.34572 -15.92483 -15.78080 -15.56283 -15.19175 -15.00078 -14.81410 -14.69846 -14.54053 -14.33741 -14.21589 -13.99199 -13.78782 -13.37967 -13.02647 -12.96167 -12.91491 -12.82258 -12.67501 -12.50009 -12.34520 -12.22944 -12.01757 -11.86494 -11.81481 -11.71979 -11.42888 -11.29413 -11.17350 -11.03010 -10.83831 -10.46921 -10.20087 -9.80844 -9.21575 -7.96696 -5.26313 -0.52144 0.00475 1.34811 1.38878 1.44487 1.74299 1.99096 2.46566 2.50462 2.71943 3.35075 3.42075 3.62357 3.64612 3.68137 3.80960 3.90690 4.08305 4.17032 4.22541 4.27257 4.39155 4.46222 4.51585 4.55028 4.66962 4.67794 4.77811 4.79624 4.83336 4.92182 4.97296 5.02678 5.12589 5.19050 5.20761 5.26658 5.33645 5.34095 5.37829 5.40029 5.45235 5.51228 5.69583 5.78934 5.88137 6.27661 6.41577 6.52192 6.77741 7.14399 7.15208 7.92261 8.08674 9.25367 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.002859 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.872221 B = 9791.005783 C =10834.275308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.141 4.141 4 C 0.147 3.853 5 N -0.529 5.529 6 C 0.339 3.661 7 O -0.484 6.484 8 C -0.212 4.212 9 C 0.552 3.448 10 O -0.566 6.566 11 N -0.705 5.705 12 C 0.129 3.871 13 C -0.123 4.123 14 C 0.181 3.819 15 H 0.040 0.960 16 N -0.749 5.749 17 C -0.199 4.199 18 H 0.063 0.937 19 C -0.069 4.069 20 N -0.988 5.988 21 Si 0.943 3.057 22 H -0.277 1.277 23 H -0.307 1.307 24 H -0.259 1.259 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.021 4.021 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.195 0.805 35 H 0.415 0.585 36 H 0.415 0.585 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.362 0.638 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.051 0.949 49 H 0.031 0.969 50 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -28.179 -18.859 33.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.010 4.010 5 N -0.248 5.248 6 C 0.160 3.840 7 O -0.294 6.294 8 C -0.219 4.219 9 C 0.339 3.661 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.005 3.995 13 C -0.161 4.161 14 C 0.073 3.927 15 H 0.058 0.942 16 N -0.392 5.392 17 C -0.330 4.330 18 H 0.081 0.919 19 C -0.259 4.259 20 N -0.640 5.640 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.235 1.235 24 H -0.184 1.184 25 C -0.124 4.124 26 C -0.197 4.197 27 C -0.196 4.196 28 C -0.046 4.046 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.212 0.788 35 H 0.276 0.724 36 H 0.254 0.746 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.195 0.805 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.460 -26.604 -19.509 32.994 hybrid contribution -0.715 0.765 0.690 1.254 sum -0.255 -25.839 -18.819 31.967 Atomic orbital electron populations 1.21812 0.94390 1.02863 1.01899 1.20564 0.96043 0.88979 1.05512 1.21206 1.00602 0.99871 0.92585 1.23325 0.90119 0.87690 0.99912 1.67368 1.15945 1.10290 1.31153 1.19435 0.93009 0.84343 0.87250 1.84689 1.29111 1.20126 1.95452 1.21021 1.10725 0.97049 0.93121 1.18291 0.77784 0.85904 0.84134 1.90837 1.46901 1.19167 1.87700 1.45728 1.67447 1.18084 1.04589 1.21205 1.00359 0.95014 0.82900 1.22070 1.03855 0.98765 0.91442 1.20445 0.92844 0.86537 0.92850 0.94219 1.42871 1.19454 1.16816 1.60040 1.18971 1.01098 0.92862 1.20084 0.91928 1.25348 1.02016 0.96460 1.02120 1.69860 1.38287 1.07960 1.47900 0.85579 0.81632 0.76231 0.79337 1.20343 1.23503 1.18390 1.21614 0.99932 0.95695 0.95194 1.21860 0.98440 0.96755 1.02635 1.21765 1.00412 1.00026 0.97414 1.21979 0.91168 0.90522 1.00960 0.90631 0.93184 0.92937 0.88401 0.88726 0.78790 0.72417 0.74616 0.94334 0.92747 0.86831 0.89903 0.80484 0.93837 0.91585 0.93308 0.92315 0.90320 0.93815 0.93008 0.94940 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 71.98 0.71 -0.02 16 2 C -0.07 -0.25 6.08 29.85 0.18 -0.07 16 3 C -0.14 -1.42 5.14 -19.81 -0.10 -1.52 16 4 C 0.15 1.98 10.84 84.72 0.92 2.90 16 5 N -0.53 -11.73 10.37 -308.00 -3.19 -14.92 16 6 C 0.34 8.73 7.77 85.13 0.66 9.40 16 7 O -0.48 -14.09 11.66 -66.34 -0.77 -14.86 16 8 C -0.21 -4.79 5.90 -19.91 -0.12 -4.91 16 9 C 0.55 15.91 7.77 86.69 0.67 16.59 16 10 O -0.57 -22.24 15.19 16.82 0.26 -21.99 16 11 N -0.71 -15.99 5.51 -466.29 -2.57 -18.56 16 12 C 0.13 3.78 5.56 86.38 0.48 4.26 16 13 C -0.12 -2.88 4.65 30.60 0.14 -2.74 16 14 C 0.18 6.02 2.02 44.99 0.09 6.11 16 15 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 16 N -0.75 -32.85 4.26 -322.93 -1.37 -34.22 16 17 C -0.20 -10.97 8.05 84.04 0.68 -10.30 16 18 H 0.06 3.80 7.63 -2.91 -0.02 3.77 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 20 N -0.99 -64.58 13.97 21.65 0.30 -64.28 16 21 Si 0.94 47.10 27.74 68.60 1.90 49.00 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 24 H -0.26 -11.91 6.51 99.48 0.65 -11.26 16 25 C -0.10 -3.01 2.69 -10.80 -0.03 -3.04 16 26 C -0.14 -2.86 8.85 71.98 0.64 -2.22 16 27 C -0.14 -4.96 8.26 71.98 0.59 -4.37 16 28 C -0.02 -0.27 9.31 22.72 0.21 -0.06 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.10 0.04 8.09 -2.39 -0.02 0.02 16 33 H 0.09 0.08 8.09 -2.38 -0.02 0.06 16 34 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.41 8.78 9.06 -74.05 -0.67 8.11 16 36 H 0.42 5.49 6.57 -92.71 -0.61 4.88 16 37 H 0.04 1.47 7.75 -2.39 -0.02 1.46 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 1.79 6.18 -2.39 -0.01 1.78 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.36 15.63 5.66 -92.71 -0.52 15.10 16 42 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.17 6.32 -2.39 -0.02 1.16 16 47 H 0.04 1.95 6.01 -2.39 -0.01 1.93 16 48 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.17 1.00 6.52 -2.91 -0.02 0.98 16 Total: -1.00 -84.50 401.46 -0.15 -84.64 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.89 Total: 28.79 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.20 Total: 6.38 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.84 Total: -131.97 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.52 Total: -36.85 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.00 kcal Total: -84.50 -0.15 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331223916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.512 kcal (2) G-P(sol) polarization free energy of solvation -84.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds