Wall clock time and date at job start Tue Mar 31 2020 19:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.90113 * 2 1 4 4 N 1.40091 * 108.20334 * 180.25855 * 3 2 1 5 5 C 1.46494 * 126.03316 * 179.69934 * 4 3 2 6 6 C 1.50702 * 109.47270 * 270.02757 * 5 4 3 7 7 H 1.08000 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00090 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99868 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00025 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47483 * 90.00053 * 10 8 6 12 12 H 1.48505 * 109.47133 * 209.99911 * 10 8 6 13 13 H 1.48500 * 109.47203 * 329.99831 * 10 8 6 14 14 C 1.34945 * 107.92641 * 359.72330 * 4 3 2 15 15 C 1.50699 * 126.12522 * 180.02562 * 14 4 3 16 16 C 1.35320 * 107.74359 * 359.97438 * 14 4 3 17 17 C 1.50701 * 126.03550 * 179.97438 * 16 14 4 18 18 C 1.52997 * 109.47212 * 89.99805 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00011 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00115 * 180.02562 * 21 19 18 23 23 H 1.08995 * 112.84655 * 23.80332 * 22 21 19 24 24 C 1.53784 * 113.61249 * 155.00034 * 22 21 19 25 25 C 1.53782 * 87.07940 * 139.97949 * 24 22 21 26 26 C 1.53002 * 113.61371 * 89.19777 * 25 24 22 27 27 O 1.42899 * 113.61302 * 220.01705 * 25 24 22 28 28 C 1.53780 * 113.61219 * 252.49515 * 22 21 19 29 29 H 1.08997 * 109.46948 * 270.20982 * 1 2 3 30 30 H 1.08997 * 109.46782 * 30.20449 * 1 2 3 31 31 H 1.08993 * 109.47399 * 150.20471 * 1 2 3 32 32 H 1.09001 * 109.47505 * 30.02607 * 5 4 3 33 33 H 1.09003 * 109.47354 * 150.03048 * 5 4 3 34 34 H 0.97000 * 119.99693 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.46844 * 269.97419 * 15 14 4 36 36 H 1.08999 * 109.47222 * 29.97652 * 15 14 4 37 37 H 1.08998 * 109.46726 * 149.97932 * 15 14 4 38 38 H 1.09002 * 109.47060 * 209.99860 * 17 16 14 39 39 H 1.09001 * 109.47380 * 329.99947 * 17 16 14 40 40 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 42 42 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 43 43 H 1.08994 * 113.61069 * 254.52839 * 24 22 21 44 44 H 1.09000 * 113.61276 * 25.34770 * 24 22 21 45 45 H 1.08998 * 109.47074 * 59.99801 * 26 25 24 46 46 H 1.08998 * 109.47014 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.46997 * 299.99690 * 26 25 24 48 48 H 0.96702 * 113.99826 * 179.97438 * 27 25 24 49 49 H 1.09005 * 113.61632 * 334.56766 * 28 22 21 50 50 H 1.08997 * 113.61177 * 105.46541 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0142 6 6 5.1871 1.7950 -1.4379 7 1 4.6165 1.3786 -2.2548 8 6 6.2789 2.5960 -1.6974 9 7 6.9735 3.1036 -0.7026 10 14 6.7707 2.9615 -3.4620 11 1 6.0734 4.1876 -3.9265 12 1 8.2393 3.1702 -3.5334 13 1 6.3906 1.8173 -4.3289 14 6 3.6142 -0.7155 -0.0034 15 6 4.8350 -1.5990 -0.0074 16 6 2.3271 -1.1330 0.0046 17 6 1.8598 -2.5657 0.0095 18 6 1.7100 -3.0484 1.4535 19 6 1.2421 -4.4809 1.4585 20 8 1.0481 -5.0591 0.4101 21 7 1.0393 -5.1196 2.6278 22 6 0.5850 -6.5125 2.6325 23 1 0.8344 -7.0421 1.7131 24 6 0.9669 -7.2806 3.9089 25 6 -0.4271 -7.9267 3.8427 26 6 -0.4669 -9.2149 3.0181 27 8 -1.0551 -8.0650 5.1188 28 6 -0.8813 -6.6806 3.0643 29 1 -0.3633 0.0038 1.0276 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8917 -0.5106 32 1 4.5592 2.4341 0.4990 33 1 5.6122 0.9990 0.4960 34 1 7.7414 3.6674 -0.8852 35 1 5.1242 -1.8144 -1.0360 36 1 5.6537 -1.0900 0.5013 37 1 4.6100 -2.5318 0.5097 38 1 0.8981 -2.6360 -0.4988 39 1 2.5903 -3.1879 -0.5076 40 1 2.6717 -2.9782 1.9618 41 1 0.9796 -2.4263 1.9707 42 1 1.1941 -4.6571 3.4663 43 1 1.7833 -7.9881 3.7649 44 1 1.1112 -6.6388 4.7780 45 1 0.2108 -9.9477 3.4560 46 1 -1.4812 -9.6140 3.0165 47 1 -0.1587 -9.0009 1.9948 48 1 -1.9323 -8.4705 5.0835 49 1 -1.2436 -5.8750 3.7030 50 1 -1.5568 -6.9037 2.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363390162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:47 Heat of formation + Delta-G solvation = -42.640948 kcal Electronic energy + Delta-G solvation = -28425.026875 eV Core-core repulsion = 24452.557186 eV Total energy + Delta-G solvation = -3972.469690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15000 -41.32601 -39.87839 -36.39832 -36.06241 -34.83337 -34.19982 -34.00366 -31.70323 -30.50893 -29.60890 -28.09166 -27.61349 -26.81767 -25.58908 -24.26376 -23.29195 -21.39801 -20.32117 -20.21230 -20.07161 -18.82437 -18.14900 -17.94516 -17.24163 -16.74957 -16.52708 -16.25659 -16.08357 -15.82450 -15.32092 -15.07846 -14.75762 -14.64640 -14.45322 -14.22754 -14.04799 -13.88796 -13.72430 -13.56094 -13.35619 -13.24833 -13.17887 -13.03626 -12.85120 -12.76573 -12.67400 -12.63681 -12.57933 -12.46314 -12.22888 -12.11978 -11.84390 -11.70911 -11.61156 -11.14923 -10.85878 -10.75910 -10.66078 -9.96864 -9.83382 -9.01741 -8.35384 -6.53050 1.17963 1.35034 1.36361 1.47517 1.69824 1.89021 1.95225 2.30570 2.32765 2.93980 3.28887 3.47681 3.62321 3.79595 3.80325 3.84306 3.93167 3.98817 4.24231 4.28326 4.36139 4.42454 4.53227 4.58561 4.65634 4.72513 4.73122 4.74774 4.82956 4.84852 4.85565 4.87932 4.91164 4.98020 5.01976 5.04724 5.06857 5.14470 5.17467 5.30531 5.34653 5.45679 5.50135 5.56550 5.60745 5.79908 6.06294 6.32190 6.60938 6.62165 6.88550 7.12227 7.18235 7.32373 8.70547 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024551 B = 0.001917 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.190146 B =14600.131178 C =14964.453282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.078 3.922 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.126 4.126 19 C 0.519 3.481 20 O -0.580 6.580 21 N -0.711 5.711 22 C 0.120 3.880 23 H 0.104 0.896 24 C -0.128 4.128 25 C 0.107 3.893 26 C -0.162 4.162 27 O -0.567 6.567 28 C -0.172 4.172 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.415 0.585 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.392 0.608 49 H 0.091 0.909 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 -24.142 11.000 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.155 3.845 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.195 1.195 14 C -0.052 4.052 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.166 4.166 19 C 0.307 3.693 20 O -0.460 6.460 21 N -0.363 5.363 22 C 0.015 3.985 23 H 0.122 0.878 24 C -0.166 4.166 25 C 0.066 3.934 26 C -0.219 4.219 27 O -0.375 6.375 28 C -0.211 4.211 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.252 0.748 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.242 0.758 49 H 0.110 0.890 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.916 -22.769 10.522 28.685 hybrid contribution 0.154 0.051 -0.682 0.701 sum -13.761 -22.718 9.840 28.325 Atomic orbital electron populations 1.20207 0.84706 1.03430 1.03763 1.22786 0.98131 0.90219 0.99972 1.77212 0.87811 1.25030 1.27380 1.48995 1.05321 1.05163 1.54047 1.19127 0.79072 0.88747 0.97508 1.21429 1.13377 1.32443 0.91826 0.93511 1.25749 0.95401 0.94484 1.02322 1.70003 1.19300 1.33182 1.33117 0.85360 0.77875 0.78645 0.78645 1.20027 1.19344 1.19464 1.21468 0.98220 0.84686 1.00840 1.20438 0.92251 0.97919 1.03446 1.19722 0.90318 0.96557 1.20316 1.19358 1.01292 0.88314 0.95321 1.21642 1.04313 0.91273 0.99386 1.21053 0.75654 0.89235 0.83310 1.90680 1.53094 1.69211 1.33009 1.45908 1.68281 1.13172 1.08903 1.22211 0.94944 0.82376 0.98974 0.87811 1.23477 0.96416 0.99323 0.97374 1.22373 0.93769 0.93596 0.83709 1.22181 1.03809 0.95840 1.00092 1.86514 1.36853 1.84940 1.29211 1.24161 0.97088 0.99312 1.00537 0.89056 0.91744 0.89028 0.96302 0.93479 0.91732 0.90630 0.91852 0.87483 0.91120 0.91839 0.87763 0.87366 0.74827 0.89452 0.88420 0.91037 0.90440 0.91077 0.75770 0.89048 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.26 71.24 0.73 -0.92 16 2 C 0.05 2.00 7.22 43.10 0.31 2.31 16 3 N -0.35 -16.52 12.58 -47.38 -0.60 -17.12 16 4 N -0.36 -17.12 3.60 -338.41 -1.22 -18.34 16 5 C 0.27 14.81 6.00 85.63 0.51 15.32 16 6 C -0.55 -31.67 9.39 25.60 0.24 -31.43 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.19 5.46 84.65 0.46 1.65 16 9 N -0.92 -52.61 13.29 21.45 0.28 -52.32 16 10 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.08 3.08 6.93 41.41 0.29 3.37 16 15 C -0.08 -2.66 9.72 71.24 0.69 -1.97 16 16 C -0.26 -8.89 5.35 -20.14 -0.11 -9.00 16 17 C 0.00 -0.10 4.41 29.85 0.13 0.03 16 18 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 19 C 0.52 10.81 7.83 87.66 0.69 11.49 16 20 O -0.58 -16.75 15.58 -3.04 -0.05 -16.80 16 21 N -0.71 -10.41 5.35 -440.03 -2.36 -12.77 16 22 C 0.12 1.70 3.89 45.52 0.18 1.88 16 23 H 0.10 1.81 6.98 -2.39 -0.02 1.79 16 24 C -0.13 -1.44 7.25 31.12 0.23 -1.21 16 25 C 0.11 1.14 1.94 -10.27 -0.02 1.12 16 26 C -0.16 -1.29 9.32 71.98 0.67 -0.62 16 27 O -0.57 -6.58 13.49 -148.98 -2.01 -8.59 16 28 C -0.17 -2.13 7.27 31.12 0.23 -1.90 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.02 7.25 -2.39 -0.02 2.00 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 2.51 7.05 -2.39 -0.02 2.50 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 2.14 7.08 -2.39 -0.02 2.13 16 37 H 0.11 2.60 7.78 -2.39 -0.02 2.58 16 38 H 0.07 1.88 7.20 -2.39 -0.02 1.86 16 39 H 0.06 1.77 7.73 -2.39 -0.02 1.75 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.41 3.99 8.73 -92.71 -0.81 3.18 16 43 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 44 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 45 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.07 0.62 7.35 -2.39 -0.02 0.60 16 48 H 0.39 1.59 9.04 -74.06 -0.67 0.93 16 49 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -75.19 412.58 0.96 -74.23 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.52 Total: 18.01 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.40 Total: -12.19 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.88 Total: -100.55 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -2.06 Total: -25.39 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.19 0.96 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363390162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.586 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds