Wall clock time and date at job start Tue Mar 31 2020 19:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46953 * 2 1 4 4 O 1.33654 * 125.79795 * 269.97569 * 3 2 1 5 5 C 1.34218 * 110.90822 * 179.97438 * 4 3 2 6 6 C 1.34181 * 109.12382 * 359.97438 * 5 4 3 7 7 C 1.36412 * 125.80494 * 90.26323 * 3 2 1 8 8 C 1.47382 * 127.19090 * 0.02562 * 7 3 2 9 9 O 1.21605 * 120.00008 * 0.15454 * 8 7 3 10 10 N 1.34778 * 119.99722 * 180.15253 * 8 7 3 11 11 C 1.46500 * 119.99825 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47053 * 180.02562 * 12 11 10 14 14 N 1.46911 * 109.46868 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99570 * 294.29800 * 14 13 12 16 16 C 1.53239 * 109.33425 * 172.74745 * 15 14 13 17 17 N 1.47087 * 108.52036 * 53.83377 * 16 15 14 18 18 C 1.36936 * 120.88321 * 128.83620 * 17 16 15 19 19 H 1.08000 * 120.00119 * 333.48673 * 18 17 16 20 20 C 1.38813 * 120.00179 * 153.48406 * 18 17 16 21 21 N 1.31612 * 120.00118 * 159.44350 * 20 18 17 22 22 Si 1.86804 * 119.99816 * 339.43940 * 20 18 17 23 23 H 1.48510 * 109.46784 * 91.97743 * 22 20 18 24 24 H 1.48497 * 109.47142 * 211.97582 * 22 20 18 25 25 H 1.48495 * 109.47346 * 331.98130 * 22 20 18 26 26 C 1.47076 * 118.23414 * 308.80838 * 17 16 15 27 27 C 1.46898 * 110.99582 * 169.99853 * 14 13 12 28 28 H 1.09007 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47524 * 300.00141 * 1 2 3 30 30 H 1.08996 * 109.47304 * 60.00129 * 1 2 3 31 31 H 1.08995 * 109.46985 * 239.99640 * 2 1 3 32 32 H 1.09003 * 109.46935 * 120.00021 * 2 1 3 33 33 H 1.07998 * 125.43814 * 179.97438 * 5 4 3 34 34 H 1.07996 * 127.02399 * 179.97438 * 6 5 4 35 35 H 0.96993 * 120.00305 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47663 * 300.00438 * 11 10 8 37 37 H 1.09003 * 109.46996 * 60.00180 * 11 10 8 38 38 H 1.09009 * 109.47306 * 300.00154 * 12 11 10 39 39 H 1.08993 * 109.47139 * 59.99931 * 12 11 10 40 40 H 1.08999 * 109.46875 * 299.99445 * 13 12 11 41 41 H 1.09003 * 109.47450 * 59.99879 * 13 12 11 42 42 H 1.08999 * 109.49292 * 292.70166 * 15 14 13 43 43 H 1.08995 * 109.49233 * 52.79188 * 15 14 13 44 44 H 1.08997 * 109.63099 * 294.12463 * 16 15 14 45 45 H 1.08999 * 109.62535 * 173.53483 * 16 15 14 46 46 H 0.97004 * 120.00276 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.63507 * 291.47846 * 26 17 16 48 48 H 1.09002 * 109.78956 * 170.99314 * 26 17 16 49 49 H 1.08996 * 109.49657 * 307.21207 * 27 14 13 50 50 H 1.09002 * 109.49531 * 67.29321 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2933 2.1577 -1.0840 5 6 2.7249 3.3809 -0.7392 6 6 2.7565 3.4748 0.5990 7 6 2.3030 2.1715 1.1063 8 6 2.1660 1.7628 2.5157 9 8 1.7754 0.6442 2.7891 10 7 2.4736 2.6290 3.5014 11 6 2.3369 2.2229 4.9024 12 6 2.7465 3.3830 5.8119 13 6 2.6043 2.9587 7.2750 14 7 2.9971 4.0728 8.1483 15 6 4.4269 4.3770 8.0026 16 6 4.7569 5.6516 8.7867 17 7 4.2957 5.4800 10.1728 18 6 5.1344 5.7224 11.2277 19 1 6.2024 5.6220 11.1026 20 6 4.6120 6.0972 12.4580 21 7 5.3274 5.9418 13.5517 22 14 2.8935 6.8222 12.5611 23 1 1.9111 5.7347 12.8016 24 1 2.8344 7.7987 13.6783 25 1 2.5687 7.5093 11.2854 26 6 2.9095 5.0417 10.3956 27 6 2.6522 3.7912 9.5482 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.0025 4.1645 -1.4286 34 1 3.0587 4.3310 1.1839 35 1 2.7848 3.5214 3.2833 36 1 1.3000 1.9531 5.1030 37 1 2.9797 1.3643 5.0962 38 1 3.7834 3.6532 5.6115 39 1 2.1034 4.2413 5.6180 40 1 1.5676 2.6883 7.4757 41 1 3.2477 2.1004 7.4687 42 1 5.0168 3.5473 8.3921 43 1 4.6612 4.5274 6.9488 44 1 4.2475 6.5022 8.3340 45 1 5.8340 5.8186 8.7773 46 1 4.9621 6.2033 14.4114 47 1 2.2226 5.8338 10.0975 48 1 2.7618 4.8065 11.4497 49 1 1.5995 3.5166 9.6153 50 1 3.2669 2.9696 9.9161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479918742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:29 Heat of formation + Delta-G solvation = 4.162557 kcal Electronic energy + Delta-G solvation = -28331.456629 eV Core-core repulsion = 24361.016491 eV Total energy + Delta-G solvation = -3970.440138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.99340 -39.68971 -38.52292 -36.03084 -34.65664 -34.28671 -33.24610 -31.95421 -30.93838 -30.34426 -29.21541 -27.22015 -25.16335 -23.94193 -23.52385 -23.07761 -22.25410 -21.36435 -21.20804 -19.94377 -19.41461 -18.22381 -16.90469 -16.70493 -16.26427 -16.17778 -15.91320 -15.48457 -15.01484 -14.80998 -14.71485 -14.44296 -14.20811 -14.10022 -13.95594 -13.76096 -13.35237 -13.27798 -13.07832 -12.69504 -12.54150 -12.33256 -12.26852 -11.96092 -11.68284 -11.64946 -11.57736 -11.39972 -11.06358 -10.86061 -10.50417 -10.31124 -10.24173 -10.22433 -10.06486 -9.79486 -9.45695 -9.35322 -8.97759 -8.65162 -8.02060 -6.96090 -5.94430 -3.29651 0.99184 1.63443 2.37139 2.94629 3.07121 3.32664 3.49535 3.53923 4.04532 4.13777 4.40542 4.42113 4.53886 4.68901 4.80459 4.85347 4.92115 4.97590 4.98476 5.05593 5.09861 5.23856 5.33385 5.40372 5.47543 5.51066 5.56554 5.61566 5.66984 5.68964 5.73567 5.81889 5.87671 5.89893 5.96593 6.02003 6.07997 6.09010 6.19099 6.23727 6.39349 6.57082 6.60699 6.64620 6.87500 7.24213 7.40850 7.45023 7.94535 7.96143 8.32649 8.93359 9.72182 10.11639 11.21574 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.001769 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.704469 B =15826.282707 C =16244.109451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.082 3.918 4 O -0.176 6.176 5 C -0.038 4.038 6 C -0.189 4.189 7 C -0.246 4.246 8 C 0.589 3.411 9 O -0.541 6.541 10 N -0.721 5.721 11 C 0.122 3.878 12 C -0.128 4.128 13 C 0.058 3.942 14 N -0.535 5.535 15 C 0.039 3.961 16 C 0.152 3.848 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.021 3.979 21 N -0.910 5.910 22 Si 0.884 3.116 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.130 3.870 27 C 0.044 3.956 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.208 0.792 34 H 0.158 0.842 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.064 0.936 46 H 0.262 0.738 47 H 0.032 0.968 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -8.236 -30.099 32.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.029 3.971 4 O -0.071 6.071 5 C -0.104 4.104 6 C -0.208 4.208 7 C -0.250 4.250 8 C 0.377 3.623 9 O -0.421 6.421 10 N -0.373 5.373 11 C -0.002 4.002 12 C -0.166 4.166 13 C -0.071 4.071 14 N -0.260 5.260 15 C -0.090 4.090 16 C 0.026 3.974 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.178 4.178 21 N -0.553 5.553 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.004 3.996 27 C -0.086 4.086 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.225 0.775 34 H 0.175 0.825 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.414 -8.669 -30.108 32.442 hybrid contribution -0.199 0.519 0.513 0.756 sum -8.613 -8.150 -29.596 31.883 Atomic orbital electron populations 1.21690 0.93229 1.02771 1.02396 1.20419 0.97080 0.86346 1.05184 1.22896 0.96701 0.94427 0.83089 1.83781 1.65159 1.23177 1.35019 1.23889 1.03962 0.86071 0.96446 1.22893 1.05615 0.97702 0.94626 1.21159 1.14068 0.95910 0.93868 1.17180 0.76942 0.84430 0.83727 1.90761 1.47022 1.20216 1.84058 1.45789 1.68281 1.16951 1.06236 1.21351 1.02004 0.97781 0.79053 1.21798 1.02639 0.97853 0.94295 1.21951 1.00797 0.92557 0.91756 1.61929 1.18390 1.38496 1.07150 1.22696 0.87262 0.99500 0.99576 1.21004 0.98123 0.93533 0.84780 1.44410 1.09341 1.77817 1.01715 1.18927 0.90773 1.40971 0.88045 0.89718 1.25266 0.97623 0.99406 0.95468 1.69834 1.38224 1.49538 0.97679 0.86939 0.85359 0.79253 0.76955 1.21627 1.23189 1.19489 1.21425 0.86895 0.93313 0.97964 1.22633 0.99300 0.99102 0.87534 0.91234 0.91852 0.92625 0.89974 0.86733 0.77500 0.82464 0.76448 0.91248 0.91378 0.91058 0.90374 0.90886 0.94933 0.94929 0.91438 0.95267 0.91742 0.92788 0.94983 0.90756 0.91618 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.05 -0.41 5.95 -27.89 -0.17 -0.58 16 3 C 0.08 0.75 6.63 -34.97 -0.23 0.52 16 4 O -0.18 -1.46 10.52 7.64 0.08 -1.38 16 5 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 6 C -0.19 -1.33 10.60 -37.45 -0.40 -1.72 16 7 C -0.25 -2.37 6.31 -103.27 -0.65 -3.02 16 8 C 0.59 6.58 7.81 -12.54 -0.10 6.48 16 9 O -0.54 -7.46 14.84 5.27 0.08 -7.38 16 10 N -0.72 -6.63 5.55 -61.40 -0.34 -6.97 16 11 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 12 C -0.13 -1.25 5.26 -26.73 -0.14 -1.39 16 13 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 14 N -0.53 -8.53 4.63 -234.31 -1.08 -9.61 16 15 C 0.04 0.63 5.46 -3.70 -0.02 0.61 16 16 C 0.15 2.99 6.69 -3.60 -0.02 2.97 16 17 N -0.61 -14.63 2.82 -172.01 -0.48 -15.12 16 18 C -0.26 -7.28 10.08 -15.06 -0.15 -7.44 16 19 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 20 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 21 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16 22 Si 0.88 22.54 24.31 -169.99 -4.13 18.41 16 23 H -0.29 -7.06 6.58 56.52 0.37 -6.68 16 24 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.27 -6.82 6.61 56.52 0.37 -6.44 16 26 C 0.13 2.87 4.35 -3.60 -0.02 2.86 16 27 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 1.04 6.47 -51.93 -0.34 0.71 16 33 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.16 0.72 7.74 -52.49 -0.41 0.32 16 35 H 0.40 2.79 7.64 -40.82 -0.31 2.48 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.69 6.40 -51.92 -0.33 0.36 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 41 H 0.03 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.91 6.16 -51.93 -0.32 0.59 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.24 7.95 -51.93 -0.41 0.83 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.03 0.72 6.94 -51.93 -0.36 0.36 16 48 H 0.07 1.78 4.61 -51.93 -0.24 1.54 16 49 H 0.07 1.04 7.99 -51.93 -0.41 0.62 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -34.00 393.33 -8.75 -42.75 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.24 Total: -1.32 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.33 Total: 1.91 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.14 Total: -58.92 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.16 Total: -8.76 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.13 Total: 18.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.00 -8.75 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479918742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.910 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds