Wall clock time and date at job start Tue Mar 31 2020 19:29:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50697 * 109.46953 * 2 1
4 4 O 1.33654 * 125.79795 * 269.97569 * 3 2 1
5 5 C 1.34218 * 110.90822 * 179.97438 * 4 3 2
6 6 C 1.34181 * 109.12382 * 359.97438 * 5 4 3
7 7 C 1.36412 * 125.80494 * 90.26323 * 3 2 1
8 8 C 1.47382 * 127.19090 * 0.02562 * 7 3 2
9 9 O 1.21605 * 120.00008 * 0.15454 * 8 7 3
10 10 N 1.34778 * 119.99722 * 180.15253 * 8 7 3
11 11 C 1.46500 * 119.99825 * 179.97438 * 10 8 7
12 12 C 1.52996 * 109.47192 * 180.02562 * 11 10 8
13 13 C 1.53001 * 109.47053 * 180.02562 * 12 11 10
14 14 N 1.46911 * 109.46868 * 180.02562 * 13 12 11
15 15 C 1.46902 * 110.99570 * 294.29800 * 14 13 12
16 16 C 1.53239 * 109.33425 * 172.74745 * 15 14 13
17 17 N 1.47087 * 108.52036 * 53.83377 * 16 15 14
18 18 C 1.36936 * 120.88321 * 128.83620 * 17 16 15
19 19 H 1.08000 * 120.00119 * 333.48673 * 18 17 16
20 20 C 1.38813 * 120.00179 * 153.48406 * 18 17 16
21 21 N 1.31612 * 120.00118 * 159.44350 * 20 18 17
22 22 Si 1.86804 * 119.99816 * 339.43940 * 20 18 17
23 23 H 1.48510 * 109.46784 * 91.97743 * 22 20 18
24 24 H 1.48497 * 109.47142 * 211.97582 * 22 20 18
25 25 H 1.48495 * 109.47346 * 331.98130 * 22 20 18
26 26 C 1.47076 * 118.23414 * 308.80838 * 17 16 15
27 27 C 1.46898 * 110.99582 * 169.99853 * 14 13 12
28 28 H 1.09007 * 109.47384 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47524 * 300.00141 * 1 2 3
30 30 H 1.08996 * 109.47304 * 60.00129 * 1 2 3
31 31 H 1.08995 * 109.46985 * 239.99640 * 2 1 3
32 32 H 1.09003 * 109.46935 * 120.00021 * 2 1 3
33 33 H 1.07998 * 125.43814 * 179.97438 * 5 4 3
34 34 H 1.07996 * 127.02399 * 179.97438 * 6 5 4
35 35 H 0.96993 * 120.00305 * 0.02562 * 10 8 7
36 36 H 1.08999 * 109.47663 * 300.00438 * 11 10 8
37 37 H 1.09003 * 109.46996 * 60.00180 * 11 10 8
38 38 H 1.09009 * 109.47306 * 300.00154 * 12 11 10
39 39 H 1.08993 * 109.47139 * 59.99931 * 12 11 10
40 40 H 1.08999 * 109.46875 * 299.99445 * 13 12 11
41 41 H 1.09003 * 109.47450 * 59.99879 * 13 12 11
42 42 H 1.08999 * 109.49292 * 292.70166 * 15 14 13
43 43 H 1.08995 * 109.49233 * 52.79188 * 15 14 13
44 44 H 1.08997 * 109.63099 * 294.12463 * 16 15 14
45 45 H 1.08999 * 109.62535 * 173.53483 * 16 15 14
46 46 H 0.97004 * 120.00276 * 180.02562 * 21 20 18
47 47 H 1.09000 * 109.63507 * 291.47846 * 26 17 16
48 48 H 1.09002 * 109.78956 * 170.99314 * 26 17 16
49 49 H 1.08996 * 109.49657 * 307.21207 * 27 14 13
50 50 H 1.09002 * 109.49531 * 67.29321 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 2.2933 2.1577 -1.0840
5 6 2.7249 3.3809 -0.7392
6 6 2.7565 3.4748 0.5990
7 6 2.3030 2.1715 1.1063
8 6 2.1660 1.7628 2.5157
9 8 1.7754 0.6442 2.7891
10 7 2.4736 2.6290 3.5014
11 6 2.3369 2.2229 4.9024
12 6 2.7465 3.3830 5.8119
13 6 2.6043 2.9587 7.2750
14 7 2.9971 4.0728 8.1483
15 6 4.4269 4.3770 8.0026
16 6 4.7569 5.6516 8.7867
17 7 4.2957 5.4800 10.1728
18 6 5.1344 5.7224 11.2277
19 1 6.2024 5.6220 11.1026
20 6 4.6120 6.0972 12.4580
21 7 5.3274 5.9418 13.5517
22 14 2.8935 6.8222 12.5611
23 1 1.9111 5.7347 12.8016
24 1 2.8344 7.7987 13.6783
25 1 2.5687 7.5093 11.2854
26 6 2.9095 5.0417 10.3956
27 6 2.6522 3.7912 9.5482
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 3.0025 4.1645 -1.4286
34 1 3.0587 4.3310 1.1839
35 1 2.7848 3.5214 3.2833
36 1 1.3000 1.9531 5.1030
37 1 2.9797 1.3643 5.0962
38 1 3.7834 3.6532 5.6115
39 1 2.1034 4.2413 5.6180
40 1 1.5676 2.6883 7.4757
41 1 3.2477 2.1004 7.4687
42 1 5.0168 3.5473 8.3921
43 1 4.6612 4.5274 6.9488
44 1 4.2475 6.5022 8.3340
45 1 5.8340 5.8186 8.7773
46 1 4.9621 6.2033 14.4114
47 1 2.2226 5.8338 10.0975
48 1 2.7618 4.8065 11.4497
49 1 1.5995 3.5166 9.6153
50 1 3.2669 2.9696 9.9161
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001479918742.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:29:29
Heat of formation + Delta-G solvation = 4.162557 kcal
Electronic energy + Delta-G solvation = -28331.456629 eV
Core-core repulsion = 24361.016491 eV
Total energy + Delta-G solvation = -3970.440138 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.99340 -39.68971 -38.52292 -36.03084 -34.65664 -34.28671 -33.24610 -31.95421
-30.93838 -30.34426 -29.21541 -27.22015 -25.16335 -23.94193 -23.52385 -23.07761
-22.25410 -21.36435 -21.20804 -19.94377 -19.41461 -18.22381 -16.90469 -16.70493
-16.26427 -16.17778 -15.91320 -15.48457 -15.01484 -14.80998 -14.71485 -14.44296
-14.20811 -14.10022 -13.95594 -13.76096 -13.35237 -13.27798 -13.07832 -12.69504
-12.54150 -12.33256 -12.26852 -11.96092 -11.68284 -11.64946 -11.57736 -11.39972
-11.06358 -10.86061 -10.50417 -10.31124 -10.24173 -10.22433 -10.06486 -9.79486
-9.45695 -9.35322 -8.97759 -8.65162 -8.02060 -6.96090 -5.94430 -3.29651
0.99184 1.63443 2.37139 2.94629 3.07121 3.32664 3.49535 3.53923
4.04532 4.13777 4.40542 4.42113 4.53886 4.68901 4.80459 4.85347
4.92115 4.97590 4.98476 5.05593 5.09861 5.23856 5.33385 5.40372
5.47543 5.51066 5.56554 5.61566 5.66984 5.68964 5.73567 5.81889
5.87671 5.89893 5.96593 6.02003 6.07997 6.09010 6.19099 6.23727
6.39349 6.57082 6.60699 6.64620 6.87500 7.24213 7.40850 7.45023
7.94535 7.96143 8.32649 8.93359 9.72182 10.11639 11.21574
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.028987 B = 0.001769 C = 0.001723
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.704469 B =15826.282707 C =16244.109451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.053 4.053
3 C 0.082 3.918
4 O -0.176 6.176
5 C -0.038 4.038
6 C -0.189 4.189
7 C -0.246 4.246
8 C 0.589 3.411
9 O -0.541 6.541
10 N -0.721 5.721
11 C 0.122 3.878
12 C -0.128 4.128
13 C 0.058 3.942
14 N -0.535 5.535
15 C 0.039 3.961
16 C 0.152 3.848
17 N -0.609 5.609
18 C -0.259 4.259
19 H 0.085 0.915
20 C 0.021 3.979
21 N -0.910 5.910
22 Si 0.884 3.116
23 H -0.288 1.288
24 H -0.304 1.304
25 H -0.270 1.270
26 C 0.130 3.870
27 C 0.044 3.956
28 H 0.069 0.931
29 H 0.062 0.938
30 H 0.055 0.945
31 H 0.082 0.918
32 H 0.115 0.885
33 H 0.208 0.792
34 H 0.158 0.842
35 H 0.401 0.599
36 H 0.069 0.931
37 H 0.068 0.932
38 H 0.071 0.929
39 H 0.078 0.922
40 H 0.073 0.927
41 H 0.032 0.968
42 H 0.032 0.968
43 H 0.067 0.933
44 H 0.029 0.971
45 H 0.064 0.936
46 H 0.262 0.738
47 H 0.032 0.968
48 H 0.074 0.926
49 H 0.065 0.935
50 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.887 -8.236 -30.099 32.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.090 4.090
3 C 0.029 3.971
4 O -0.071 6.071
5 C -0.104 4.104
6 C -0.208 4.208
7 C -0.250 4.250
8 C 0.377 3.623
9 O -0.421 6.421
10 N -0.373 5.373
11 C -0.002 4.002
12 C -0.166 4.166
13 C -0.071 4.071
14 N -0.260 5.260
15 C -0.090 4.090
16 C 0.026 3.974
17 N -0.333 5.333
18 C -0.387 4.387
19 H 0.103 0.897
20 C -0.178 4.178
21 N -0.553 5.553
22 Si 0.715 3.285
23 H -0.216 1.216
24 H -0.232 1.232
25 H -0.195 1.195
26 C 0.004 3.996
27 C -0.086 4.086
28 H 0.088 0.912
29 H 0.081 0.919
30 H 0.074 0.926
31 H 0.100 0.900
32 H 0.133 0.867
33 H 0.225 0.775
34 H 0.175 0.825
35 H 0.236 0.764
36 H 0.088 0.912
37 H 0.086 0.914
38 H 0.089 0.911
39 H 0.096 0.904
40 H 0.091 0.909
41 H 0.051 0.949
42 H 0.051 0.949
43 H 0.086 0.914
44 H 0.047 0.953
45 H 0.083 0.917
46 H 0.072 0.928
47 H 0.050 0.950
48 H 0.092 0.908
49 H 0.084 0.916
50 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -8.414 -8.669 -30.108 32.442
hybrid contribution -0.199 0.519 0.513 0.756
sum -8.613 -8.150 -29.596 31.883
Atomic orbital electron populations
1.21690 0.93229 1.02771 1.02396 1.20419 0.97080 0.86346 1.05184
1.22896 0.96701 0.94427 0.83089 1.83781 1.65159 1.23177 1.35019
1.23889 1.03962 0.86071 0.96446 1.22893 1.05615 0.97702 0.94626
1.21159 1.14068 0.95910 0.93868 1.17180 0.76942 0.84430 0.83727
1.90761 1.47022 1.20216 1.84058 1.45789 1.68281 1.16951 1.06236
1.21351 1.02004 0.97781 0.79053 1.21798 1.02639 0.97853 0.94295
1.21951 1.00797 0.92557 0.91756 1.61929 1.18390 1.38496 1.07150
1.22696 0.87262 0.99500 0.99576 1.21004 0.98123 0.93533 0.84780
1.44410 1.09341 1.77817 1.01715 1.18927 0.90773 1.40971 0.88045
0.89718 1.25266 0.97623 0.99406 0.95468 1.69834 1.38224 1.49538
0.97679 0.86939 0.85359 0.79253 0.76955 1.21627 1.23189 1.19489
1.21425 0.86895 0.93313 0.97964 1.22633 0.99300 0.99102 0.87534
0.91234 0.91852 0.92625 0.89974 0.86733 0.77500 0.82464 0.76448
0.91248 0.91378 0.91058 0.90374 0.90886 0.94933 0.94929 0.91438
0.95267 0.91742 0.92788 0.94983 0.90756 0.91618 0.94598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.01 9.89 37.16 0.37 -0.64 16
2 C -0.05 -0.41 5.95 -27.89 -0.17 -0.58 16
3 C 0.08 0.75 6.63 -34.97 -0.23 0.52 16
4 O -0.18 -1.46 10.52 7.64 0.08 -1.38 16
5 C -0.04 -0.23 12.03 29.30 0.35 0.12 16
6 C -0.19 -1.33 10.60 -37.45 -0.40 -1.72 16
7 C -0.25 -2.37 6.31 -103.27 -0.65 -3.02 16
8 C 0.59 6.58 7.81 -12.54 -0.10 6.48 16
9 O -0.54 -7.46 14.84 5.27 0.08 -7.38 16
10 N -0.72 -6.63 5.55 -61.40 -0.34 -6.97 16
11 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16
12 C -0.13 -1.25 5.26 -26.73 -0.14 -1.39 16
13 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16
14 N -0.53 -8.53 4.63 -234.31 -1.08 -9.61 16
15 C 0.04 0.63 5.46 -3.70 -0.02 0.61 16
16 C 0.15 2.99 6.69 -3.60 -0.02 2.97 16
17 N -0.61 -14.63 2.82 -172.01 -0.48 -15.12 16
18 C -0.26 -7.28 10.08 -15.06 -0.15 -7.44 16
19 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16
20 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16
21 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16
22 Si 0.88 22.54 24.31 -169.99 -4.13 18.41 16
23 H -0.29 -7.06 6.58 56.52 0.37 -6.68 16
24 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16
25 H -0.27 -6.82 6.61 56.52 0.37 -6.44 16
26 C 0.13 2.87 4.35 -3.60 -0.02 2.86 16
27 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16
28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.11 1.04 6.47 -51.93 -0.34 0.71 16
33 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16
34 H 0.16 0.72 7.74 -52.49 -0.41 0.32 16
35 H 0.40 2.79 7.64 -40.82 -0.31 2.48 16
36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.07 0.69 6.40 -51.92 -0.33 0.36 16
39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
40 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16
41 H 0.03 0.41 8.13 -51.93 -0.42 -0.01 16
42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
43 H 0.07 0.91 6.16 -51.93 -0.32 0.59 16
44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
45 H 0.06 1.24 7.95 -51.93 -0.41 0.83 16
46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
47 H 0.03 0.72 6.94 -51.93 -0.36 0.36 16
48 H 0.07 1.78 4.61 -51.93 -0.24 1.54 16
49 H 0.07 1.04 7.99 -51.93 -0.41 0.62 16
50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
LS Contribution 393.33 15.07 5.93 5.93
Total: -1.00 -34.00 393.33 -8.75 -42.75
By element:
Atomic # 1 Polarization: 6.92 SS G_CDS: -8.24 Total: -1.32 kcal
Atomic # 6 Polarization: 3.24 SS G_CDS: -1.33 Total: 1.91 kcal
Atomic # 7 Polarization: -57.79 SS G_CDS: -1.14 Total: -58.92 kcal
Atomic # 8 Polarization: -8.92 SS G_CDS: 0.16 Total: -8.76 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -4.13 Total: 18.41 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -34.00 -8.75 -42.75 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479918742.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.910 kcal
(2) G-P(sol) polarization free energy of solvation -34.000 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds