Wall clock time and date at job start Tue Mar 31 2020 19:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46953 * 2 1 4 4 O 1.33654 * 125.79795 * 269.97569 * 3 2 1 5 5 C 1.34218 * 110.90822 * 179.97438 * 4 3 2 6 6 C 1.34181 * 109.12382 * 359.97438 * 5 4 3 7 7 C 1.36412 * 125.80494 * 90.26323 * 3 2 1 8 8 C 1.47382 * 127.19090 * 0.02562 * 7 3 2 9 9 O 1.21605 * 120.00008 * 0.15454 * 8 7 3 10 10 N 1.34778 * 119.99722 * 180.15253 * 8 7 3 11 11 C 1.46500 * 119.99825 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47053 * 180.02562 * 12 11 10 14 14 N 1.46911 * 109.46868 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99570 * 294.29800 * 14 13 12 16 16 C 1.53239 * 109.33425 * 172.74745 * 15 14 13 17 17 N 1.47087 * 108.52036 * 53.83377 * 16 15 14 18 18 C 1.36936 * 120.88321 * 128.83620 * 17 16 15 19 19 H 1.08000 * 120.00119 * 333.48673 * 18 17 16 20 20 C 1.38813 * 120.00179 * 153.48406 * 18 17 16 21 21 N 1.31612 * 120.00118 * 159.44350 * 20 18 17 22 22 Si 1.86804 * 119.99816 * 339.43940 * 20 18 17 23 23 H 1.48510 * 109.46784 * 91.97743 * 22 20 18 24 24 H 1.48497 * 109.47142 * 211.97582 * 22 20 18 25 25 H 1.48495 * 109.47346 * 331.98130 * 22 20 18 26 26 C 1.47076 * 118.23414 * 308.80838 * 17 16 15 27 27 C 1.46898 * 110.99582 * 169.99853 * 14 13 12 28 28 H 1.09007 * 109.47384 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47524 * 300.00141 * 1 2 3 30 30 H 1.08996 * 109.47304 * 60.00129 * 1 2 3 31 31 H 1.08995 * 109.46985 * 239.99640 * 2 1 3 32 32 H 1.09003 * 109.46935 * 120.00021 * 2 1 3 33 33 H 1.07998 * 125.43814 * 179.97438 * 5 4 3 34 34 H 1.07996 * 127.02399 * 179.97438 * 6 5 4 35 35 H 0.96993 * 120.00305 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47663 * 300.00438 * 11 10 8 37 37 H 1.09003 * 109.46996 * 60.00180 * 11 10 8 38 38 H 1.09009 * 109.47306 * 300.00154 * 12 11 10 39 39 H 1.08993 * 109.47139 * 59.99931 * 12 11 10 40 40 H 1.08999 * 109.46875 * 299.99445 * 13 12 11 41 41 H 1.09003 * 109.47450 * 59.99879 * 13 12 11 42 42 H 1.08999 * 109.49292 * 292.70166 * 15 14 13 43 43 H 1.08995 * 109.49233 * 52.79188 * 15 14 13 44 44 H 1.08997 * 109.63099 * 294.12463 * 16 15 14 45 45 H 1.08999 * 109.62535 * 173.53483 * 16 15 14 46 46 H 0.97004 * 120.00276 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.63507 * 291.47846 * 26 17 16 48 48 H 1.09002 * 109.78956 * 170.99314 * 26 17 16 49 49 H 1.08996 * 109.49657 * 307.21207 * 27 14 13 50 50 H 1.09002 * 109.49531 * 67.29321 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2933 2.1577 -1.0840 5 6 2.7249 3.3809 -0.7392 6 6 2.7565 3.4748 0.5990 7 6 2.3030 2.1715 1.1063 8 6 2.1660 1.7628 2.5157 9 8 1.7754 0.6442 2.7891 10 7 2.4736 2.6290 3.5014 11 6 2.3369 2.2229 4.9024 12 6 2.7465 3.3830 5.8119 13 6 2.6043 2.9587 7.2750 14 7 2.9971 4.0728 8.1483 15 6 4.4269 4.3770 8.0026 16 6 4.7569 5.6516 8.7867 17 7 4.2957 5.4800 10.1728 18 6 5.1344 5.7224 11.2277 19 1 6.2024 5.6220 11.1026 20 6 4.6120 6.0972 12.4580 21 7 5.3274 5.9418 13.5517 22 14 2.8935 6.8222 12.5611 23 1 1.9111 5.7347 12.8016 24 1 2.8344 7.7987 13.6783 25 1 2.5687 7.5093 11.2854 26 6 2.9095 5.0417 10.3956 27 6 2.6522 3.7912 9.5482 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.0025 4.1645 -1.4286 34 1 3.0587 4.3310 1.1839 35 1 2.7848 3.5214 3.2833 36 1 1.3000 1.9531 5.1030 37 1 2.9797 1.3643 5.0962 38 1 3.7834 3.6532 5.6115 39 1 2.1034 4.2413 5.6180 40 1 1.5676 2.6883 7.4757 41 1 3.2477 2.1004 7.4687 42 1 5.0168 3.5473 8.3921 43 1 4.6612 4.5274 6.9488 44 1 4.2475 6.5022 8.3340 45 1 5.8340 5.8186 8.7773 46 1 4.9621 6.2033 14.4114 47 1 2.2226 5.8338 10.0975 48 1 2.7618 4.8065 11.4497 49 1 1.5995 3.5166 9.6153 50 1 3.2669 2.9696 9.9161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479918742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:27 Heat of formation + Delta-G solvation = -20.275404 kcal Electronic energy + Delta-G solvation = -28332.516338 eV Core-core repulsion = 24361.016491 eV Total energy + Delta-G solvation = -3971.499847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.55873 -40.53227 -39.91337 -37.18640 -35.92170 -34.95862 -34.05419 -33.59801 -32.26130 -31.81379 -29.80739 -28.66633 -26.30370 -25.18484 -24.66292 -24.00317 -23.55159 -22.38048 -21.86836 -21.03072 -20.61447 -18.87190 -18.77389 -17.48394 -17.31710 -16.95549 -16.86278 -16.74155 -16.06199 -15.98399 -15.85075 -15.51859 -15.42630 -15.37190 -15.27308 -14.66817 -14.55523 -14.36904 -14.01474 -13.89606 -13.63051 -13.56704 -13.28518 -13.13356 -12.95387 -12.68523 -12.51749 -12.48487 -12.27088 -12.18264 -11.98447 -11.89145 -11.62174 -11.58941 -11.38394 -11.06454 -10.84462 -10.71977 -10.12888 -9.54859 -9.37025 -8.89920 -8.17474 -5.48873 0.31613 1.13404 1.29724 1.41620 1.51459 1.81678 2.21929 2.30983 2.41152 2.90590 3.07171 3.36703 3.55483 3.76060 3.87183 3.93529 4.03752 4.14043 4.14950 4.22722 4.25857 4.28960 4.40665 4.44045 4.50338 4.56314 4.59089 4.61243 4.64057 4.72513 4.76033 4.81400 4.83704 4.94403 4.98484 5.01776 5.02227 5.08102 5.17176 5.22747 5.27774 5.31065 5.37806 5.45515 5.82085 6.04392 6.07845 6.10815 6.22395 6.53384 6.89254 7.19225 7.60561 8.03149 9.02349 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.001769 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.704469 B =15826.282707 C =16244.109451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.069 3.931 4 O -0.183 6.183 5 C -0.032 4.032 6 C -0.197 4.197 7 C -0.268 4.268 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.711 5.711 11 C 0.129 3.871 12 C -0.112 4.112 13 C 0.058 3.942 14 N -0.537 5.537 15 C 0.049 3.951 16 C 0.145 3.855 17 N -0.624 5.624 18 C -0.249 4.249 19 H 0.052 0.948 20 C -0.038 4.038 21 N -0.958 5.958 22 Si 0.950 3.050 23 H -0.272 1.272 24 H -0.311 1.311 25 H -0.263 1.263 26 C 0.125 3.875 27 C 0.052 3.948 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.181 0.819 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.017 0.983 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.262 0.738 47 H 0.036 0.964 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -7.656 -33.085 35.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C 0.015 3.985 4 O -0.078 6.078 5 C -0.096 4.096 6 C -0.216 4.216 7 C -0.273 4.273 8 C 0.372 3.628 9 O -0.458 6.458 10 N -0.363 5.363 11 C 0.005 3.995 12 C -0.150 4.150 13 C -0.070 4.070 14 N -0.261 5.261 15 C -0.080 4.080 16 C 0.020 3.980 17 N -0.350 5.350 18 C -0.379 4.379 19 H 0.070 0.930 20 C -0.232 4.232 21 N -0.604 5.604 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.239 1.239 25 H -0.188 1.188 26 C 0.000 4.000 27 C -0.077 4.077 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.263 0.737 34 H 0.199 0.801 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.123 0.877 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.901 -8.078 -33.151 35.528 hybrid contribution 0.341 0.323 1.340 1.420 sum -9.560 -7.755 -31.810 34.109 Atomic orbital electron populations 1.21650 0.92825 1.03407 1.01685 1.20409 0.97399 0.86107 1.05167 1.23103 0.96977 0.94994 0.83401 1.83792 1.65233 1.24044 1.34777 1.24711 1.02161 0.85727 0.97047 1.23193 1.05867 0.97326 0.95251 1.21268 1.15270 0.97600 0.93141 1.17485 0.76458 0.84135 0.84673 1.90738 1.48710 1.21692 1.84673 1.45681 1.67596 1.17294 1.05705 1.21211 1.01503 0.97501 0.79335 1.21631 1.03187 0.97785 0.92397 1.22027 1.01327 0.91283 0.92336 1.61911 1.17823 1.40164 1.06230 1.22561 0.87527 0.96951 1.00929 1.21208 0.98041 0.95771 0.82953 1.44564 1.09728 1.78267 1.02406 1.18875 0.90146 1.39465 0.89376 0.93043 1.25905 1.01768 1.00406 0.95135 1.69965 1.40531 1.51655 0.98238 0.85874 0.81149 0.78434 0.76662 1.19896 1.23947 1.18782 1.21448 0.85715 0.95198 0.97687 1.22440 1.00780 0.96241 0.88269 0.89975 0.93940 0.91784 0.88123 0.88532 0.73665 0.80144 0.74968 0.91765 0.92275 0.90381 0.89656 0.89767 0.95045 0.96424 0.87705 0.94317 0.92186 0.92951 0.94610 0.93004 0.88808 0.96012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.05 -0.82 5.95 29.85 0.18 -0.64 16 3 C 0.07 1.20 6.63 25.26 0.17 1.37 16 4 O -0.18 -2.69 10.52 4.42 0.05 -2.65 16 5 C -0.03 -0.29 12.03 66.89 0.80 0.51 16 6 C -0.20 -2.27 10.60 23.65 0.25 -2.02 16 7 C -0.27 -4.89 6.31 -18.99 -0.12 -5.01 16 8 C 0.58 12.63 7.81 86.65 0.68 13.31 16 9 O -0.58 -16.06 14.84 -4.05 -0.06 -16.12 16 10 N -0.71 -11.73 5.55 -466.42 -2.59 -14.32 16 11 C 0.13 2.23 5.67 86.38 0.49 2.72 16 12 C -0.11 -1.81 5.26 30.59 0.16 -1.65 16 13 C 0.06 1.25 4.96 86.30 0.43 1.68 16 14 N -0.54 -15.47 4.63 -895.23 -4.15 -19.61 16 15 C 0.05 1.48 5.46 86.38 0.47 1.96 16 16 C 0.15 5.52 6.69 86.35 0.58 6.10 16 17 N -0.62 -29.74 2.82 -698.12 -1.97 -31.70 16 18 C -0.25 -14.31 10.08 84.03 0.85 -13.47 16 19 H 0.05 3.22 8.05 -2.91 -0.02 3.20 16 20 C -0.04 -2.22 5.24 84.86 0.44 -1.77 16 21 N -0.96 -60.74 13.97 21.65 0.30 -60.44 16 22 Si 0.95 47.07 24.31 68.60 1.67 48.74 16 23 H -0.27 -12.65 6.58 99.48 0.65 -12.00 16 24 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.26 -12.60 6.61 99.48 0.66 -11.94 16 26 C 0.12 5.33 4.35 86.35 0.38 5.71 16 27 C 0.05 1.77 5.62 86.38 0.49 2.25 16 28 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.83 6.47 -2.39 -0.02 1.81 16 33 H 0.25 0.04 8.06 -2.91 -0.02 0.02 16 34 H 0.18 1.04 7.74 -2.91 -0.02 1.02 16 35 H 0.41 4.61 7.64 -92.71 -0.71 3.90 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.19 6.40 -2.38 -0.02 1.17 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.66 7.97 -2.39 -0.02 1.64 16 41 H 0.03 0.70 8.13 -2.39 -0.02 0.69 16 42 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 2.40 6.16 -2.39 -0.01 2.38 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 46 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.04 1.52 6.94 -2.39 -0.02 1.50 16 48 H 0.05 2.44 4.61 -2.39 -0.01 2.43 16 49 H 0.09 2.65 7.99 -2.39 -0.02 2.64 16 50 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -76.02 393.33 0.33 -75.69 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.13 Total: 10.57 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.95 Total: 9.84 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -8.40 Total: -126.08 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.01 Total: -18.76 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.74 kcal Total: -76.02 0.33 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479918742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.411 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds