Wall clock time and date at job start Tue Mar 31 2020 19:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47105 * 120.00199 * 2 1 4 4 O 1.21610 * 120.00485 * 179.97438 * 3 2 1 5 5 N 1.34779 * 119.99632 * 0.02562 * 3 2 1 6 6 C 1.46497 * 119.99703 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.27588 * 327.08661 * 6 5 3 8 8 C 1.54592 * 110.31088 * 89.28423 * 6 5 3 9 9 C 1.54935 * 102.92439 * 140.86784 * 8 6 5 10 10 N 1.48532 * 103.23120 * 322.59281 * 9 8 6 11 11 C 1.46899 * 111.00521 * 159.71906 * 10 9 8 12 12 C 1.50698 * 109.46987 * 52.59789 * 11 10 9 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 11 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47459 * 59.99812 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47211 * 300.00250 * 19 17 15 23 23 C 1.47902 * 105.82040 * 39.19825 * 10 9 8 24 24 C 1.32992 * 120.00003 * 180.02562 * 2 1 3 25 25 C 1.51450 * 126.34198 * 179.68767 * 24 2 1 26 26 C 1.54277 * 106.85247 * 180.24347 * 25 24 2 27 27 C 1.54977 * 103.65966 * 23.48370 * 26 25 24 28 28 C 1.51841 * 126.34073 * 0.02562 * 24 2 1 29 29 H 1.09008 * 109.46968 * 89.99728 * 1 2 3 30 30 H 1.08994 * 109.46975 * 209.99536 * 1 2 3 31 31 H 1.09002 * 109.47305 * 329.99783 * 1 2 3 32 32 H 0.97000 * 120.00140 * 359.97438 * 5 3 2 33 33 H 1.08994 * 110.72545 * 259.23123 * 8 6 5 34 34 H 1.09004 * 110.72552 * 22.51466 * 8 6 5 35 35 H 1.08996 * 110.67300 * 204.15252 * 9 8 6 36 36 H 1.09006 * 110.66239 * 81.02129 * 9 8 6 37 37 H 1.09003 * 109.46477 * 292.60279 * 11 10 9 38 38 H 1.08993 * 109.47002 * 172.60605 * 11 10 9 39 39 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 40 40 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.91425 * 94.02645 * 23 10 9 42 42 H 1.08994 * 109.92051 * 215.32000 * 23 10 9 43 43 H 1.09004 * 109.98533 * 299.72752 * 25 24 2 44 44 H 1.09003 * 109.98376 * 61.02652 * 25 24 2 45 45 H 1.09003 * 110.79457 * 264.85722 * 26 25 24 46 46 H 1.09006 * 110.55528 * 141.99347 * 26 25 24 47 47 H 1.09006 * 110.83580 * 204.49196 * 27 26 25 48 48 H 1.09006 * 111.00715 * 80.99271 * 27 26 25 49 49 H 1.08998 * 110.44119 * 274.92073 * 28 24 2 50 50 H 1.08992 * 110.44778 * 37.32467 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2740 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7098 0.0011 7 1 3.2333 3.6075 0.5566 8 6 2.5851 4.1661 -1.4484 9 6 2.3684 5.6986 -1.3780 10 7 1.2197 5.8371 -0.4467 11 6 1.1623 7.1907 0.1211 12 6 1.1897 8.2045 -0.9936 13 8 1.2505 7.8357 -2.1475 14 7 1.1455 9.5210 -0.7083 15 6 1.1761 10.4435 -1.7221 16 1 1.2311 10.1151 -2.7495 17 6 1.1364 11.8009 -1.4277 18 7 1.0701 12.2004 -0.1776 19 14 1.1774 13.0577 -2.8090 20 1 0.0094 12.8500 -3.7022 21 1 1.1250 14.4262 -2.2349 22 1 2.4312 12.8961 -3.5883 23 6 1.4348 4.8269 0.6120 24 6 2.1720 -1.1517 -0.0005 25 6 3.6772 -1.3190 -0.0072 26 6 3.9586 -2.8359 -0.0114 27 6 2.6648 -3.4466 -0.6072 28 6 1.5626 -2.5425 -0.0017 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5139 32 1 0.5986 2.4411 0.0005 33 1 3.6118 3.9344 -1.7316 34 1 1.8799 3.7084 -2.1421 35 1 2.1171 6.0973 -2.3608 36 1 3.2520 6.1940 -0.9753 37 1 2.0200 7.3469 0.7754 38 1 0.2424 7.3056 0.6943 39 1 1.0965 9.8160 0.2145 40 1 1.0420 13.1480 0.0279 41 1 1.9540 5.2794 1.4569 42 1 0.4775 4.4191 0.9362 43 1 4.0993 -0.8574 -0.8999 44 1 4.1064 -0.8650 0.8859 45 1 4.1233 -3.2017 1.0021 46 1 4.8164 -3.0643 -0.6440 47 1 2.5394 -4.4801 -0.2842 48 1 2.6662 -3.3797 -1.6952 49 1 1.3292 -2.8567 1.0156 50 1 0.6662 -2.5650 -0.6213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479949003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:05 Heat of formation + Delta-G solvation = -60.944148 kcal Electronic energy + Delta-G solvation = -28513.089374 eV Core-core repulsion = 24539.825998 eV Total energy + Delta-G solvation = -3973.263376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34943 -39.16589 -38.17097 -37.27943 -34.55214 -33.95588 -33.51976 -31.39377 -30.72909 -29.25866 -28.49414 -27.78224 -26.50737 -24.69932 -24.08096 -21.59837 -21.17153 -20.99664 -20.46820 -19.26324 -18.56087 -17.86809 -16.73234 -16.57172 -16.05719 -15.91089 -15.35066 -15.20397 -14.97998 -14.54010 -14.44680 -13.94692 -13.77561 -13.74293 -13.56828 -13.36952 -13.09204 -12.84700 -12.69713 -12.41577 -12.28945 -12.18160 -11.95221 -11.57721 -11.55743 -11.54408 -11.43314 -11.37309 -11.29899 -11.04392 -10.96890 -10.93750 -10.59431 -10.42191 -10.22863 -9.76930 -9.49781 -9.24010 -8.93005 -8.36789 -8.03334 -7.91868 -6.43233 -3.84191 1.15833 3.07284 3.15773 3.19180 3.25211 3.29520 3.87691 4.05555 4.09694 4.28100 4.30504 4.55821 4.64436 4.65781 4.76315 4.87724 4.91584 5.07075 5.08225 5.19140 5.20953 5.25574 5.30688 5.34664 5.41401 5.45309 5.48515 5.52232 5.53458 5.66587 5.71651 5.74165 5.75491 5.84918 5.86962 5.95389 5.97199 6.08525 6.18080 6.24307 6.30661 6.31745 6.52117 6.69436 7.19808 7.25059 7.47735 7.53756 8.04108 8.17464 8.59764 9.16166 9.51851 10.03515 10.74288 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038902 B = 0.001740 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.587725 B =16085.140392 C =16225.359721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.190 4.190 3 C 0.555 3.445 4 O -0.543 6.543 5 N -0.716 5.716 6 C 0.136 3.864 7 H 0.093 0.907 8 C -0.134 4.134 9 C 0.038 3.962 10 N -0.494 5.494 11 C 0.036 3.964 12 C 0.442 3.558 13 O -0.581 6.581 14 N -0.561 5.561 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.027 3.973 24 C -0.037 4.037 25 C -0.091 4.091 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.099 4.099 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -27.912 5.088 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.193 4.193 3 C 0.344 3.656 4 O -0.422 6.422 5 N -0.368 5.368 6 C 0.031 3.969 7 H 0.111 0.889 8 C -0.173 4.173 9 C -0.089 4.089 10 N -0.218 5.218 11 C -0.096 4.096 12 C 0.227 3.773 13 O -0.466 6.466 14 N -0.197 5.197 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.102 4.102 24 C -0.039 4.039 25 C -0.127 4.127 26 C -0.167 4.167 27 C -0.162 4.162 28 C -0.136 4.136 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.564 -27.993 4.143 28.303 hybrid contribution 0.188 1.213 0.547 1.343 sum 0.752 -26.780 4.690 27.198 Atomic orbital electron populations 1.20710 0.90717 1.02814 1.02516 1.20769 0.96055 0.91894 1.10604 1.18278 0.87232 0.83937 0.76163 1.90766 1.13548 1.87682 1.50211 1.46049 1.10303 1.05252 1.75189 1.21845 0.95384 0.82240 0.97450 0.88870 1.22989 1.01897 0.96622 0.95836 1.23490 0.91009 0.93611 1.00772 1.64635 1.41995 1.02334 1.12882 1.22111 1.01819 0.89094 0.96579 1.19689 0.84601 0.83270 0.89722 1.90439 1.55572 1.79232 1.21309 1.41844 1.63946 1.04031 1.09884 1.19659 1.47649 0.85815 0.89869 0.87915 1.25268 0.97226 0.98031 0.97357 1.69605 1.50241 1.16907 1.17461 0.85909 0.79073 0.78849 0.80335 1.19873 1.20972 1.19918 1.23191 0.99465 0.93165 0.94383 1.22721 0.96527 0.93532 0.91099 1.21267 0.92123 0.95432 1.03914 1.22472 0.97767 0.95368 1.01111 1.22517 0.94501 0.98621 1.00515 1.21566 0.98632 0.91571 1.01858 0.91031 0.91269 0.91624 0.76257 0.90962 0.90551 0.86146 0.94373 0.93219 0.89174 0.77439 0.91794 0.92841 0.90042 0.89597 0.89788 0.91447 0.91264 0.91089 0.91112 0.89616 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.16 36.01 0.33 -0.40 16 2 C -0.19 -1.81 6.00 -102.85 -0.62 -2.42 16 3 C 0.55 6.77 7.75 -12.66 -0.10 6.67 16 4 O -0.54 -8.26 13.76 5.27 0.07 -8.19 16 5 N -0.72 -7.87 5.00 -53.67 -0.27 -8.14 16 6 C 0.14 1.72 3.34 -66.57 -0.22 1.50 16 7 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 8 C -0.13 -1.91 6.78 -24.87 -0.17 -2.08 16 9 C 0.04 0.66 5.30 -1.90 -0.01 0.65 16 10 N -0.49 -8.17 5.26 -231.89 -1.22 -9.39 16 11 C 0.04 0.63 5.52 -4.98 -0.03 0.61 16 12 C 0.44 10.30 7.49 -10.99 -0.08 10.22 16 13 O -0.58 -15.24 13.10 5.55 0.07 -15.17 16 14 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 15 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 19 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C 0.03 0.34 6.47 -2.75 -0.02 0.32 16 24 C -0.04 -0.33 6.12 -100.24 -0.61 -0.94 16 25 C -0.09 -0.86 4.81 -26.85 -0.13 -0.99 16 26 C -0.13 -0.88 6.88 -25.02 -0.17 -1.05 16 27 C -0.12 -0.72 6.94 -24.70 -0.17 -0.89 16 28 C -0.10 -0.61 5.66 -26.33 -0.15 -0.76 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.37 7.22 -51.93 -0.37 -0.01 16 31 H 0.06 0.38 6.70 -51.93 -0.35 0.04 16 32 H 0.40 3.60 6.45 -40.82 -0.26 3.33 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.12 2.46 5.97 -51.93 -0.31 2.15 16 36 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.05 0.64 7.57 -51.93 -0.39 0.25 16 42 H 0.08 0.90 7.65 -51.93 -0.40 0.51 16 43 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 44 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.41 7.68 -51.93 -0.40 0.01 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -31.86 394.26 -10.28 -42.14 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.13 Total: 12.19 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.39 Total: 2.48 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.82 Total: -55.36 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.86 -10.28 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479949003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.808 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds