Wall clock time and date at job start Tue Mar 31 2020 19:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47105 * 120.00199 * 2 1 4 4 O 1.21610 * 120.00485 * 179.97438 * 3 2 1 5 5 N 1.34779 * 119.99632 * 0.02562 * 3 2 1 6 6 C 1.46497 * 119.99703 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.27588 * 327.08661 * 6 5 3 8 8 C 1.54592 * 110.31088 * 89.28423 * 6 5 3 9 9 C 1.54935 * 102.92439 * 140.86784 * 8 6 5 10 10 N 1.48532 * 103.23120 * 322.59281 * 9 8 6 11 11 C 1.46899 * 111.00521 * 159.71906 * 10 9 8 12 12 C 1.50698 * 109.46987 * 52.59789 * 11 10 9 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 11 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47459 * 59.99812 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47211 * 300.00250 * 19 17 15 23 23 C 1.47902 * 105.82040 * 39.19825 * 10 9 8 24 24 C 1.32992 * 120.00003 * 180.02562 * 2 1 3 25 25 C 1.51450 * 126.34198 * 179.68767 * 24 2 1 26 26 C 1.54277 * 106.85247 * 180.24347 * 25 24 2 27 27 C 1.54977 * 103.65966 * 23.48370 * 26 25 24 28 28 C 1.51841 * 126.34073 * 0.02562 * 24 2 1 29 29 H 1.09008 * 109.46968 * 89.99728 * 1 2 3 30 30 H 1.08994 * 109.46975 * 209.99536 * 1 2 3 31 31 H 1.09002 * 109.47305 * 329.99783 * 1 2 3 32 32 H 0.97000 * 120.00140 * 359.97438 * 5 3 2 33 33 H 1.08994 * 110.72545 * 259.23123 * 8 6 5 34 34 H 1.09004 * 110.72552 * 22.51466 * 8 6 5 35 35 H 1.08996 * 110.67300 * 204.15252 * 9 8 6 36 36 H 1.09006 * 110.66239 * 81.02129 * 9 8 6 37 37 H 1.09003 * 109.46477 * 292.60279 * 11 10 9 38 38 H 1.08993 * 109.47002 * 172.60605 * 11 10 9 39 39 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 40 40 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.91425 * 94.02645 * 23 10 9 42 42 H 1.08994 * 109.92051 * 215.32000 * 23 10 9 43 43 H 1.09004 * 109.98533 * 299.72752 * 25 24 2 44 44 H 1.09003 * 109.98376 * 61.02652 * 25 24 2 45 45 H 1.09003 * 110.79457 * 264.85722 * 26 25 24 46 46 H 1.09006 * 110.55528 * 141.99347 * 26 25 24 47 47 H 1.09006 * 110.83580 * 204.49196 * 27 26 25 48 48 H 1.09006 * 111.00715 * 80.99271 * 27 26 25 49 49 H 1.08998 * 110.44119 * 274.92073 * 28 24 2 50 50 H 1.08992 * 110.44778 * 37.32467 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2740 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7098 0.0011 7 1 3.2333 3.6075 0.5566 8 6 2.5851 4.1661 -1.4484 9 6 2.3684 5.6986 -1.3780 10 7 1.2197 5.8371 -0.4467 11 6 1.1623 7.1907 0.1211 12 6 1.1897 8.2045 -0.9936 13 8 1.2505 7.8357 -2.1475 14 7 1.1455 9.5210 -0.7083 15 6 1.1761 10.4435 -1.7221 16 1 1.2311 10.1151 -2.7495 17 6 1.1364 11.8009 -1.4277 18 7 1.0701 12.2004 -0.1776 19 14 1.1774 13.0577 -2.8090 20 1 0.0094 12.8500 -3.7022 21 1 1.1250 14.4262 -2.2349 22 1 2.4312 12.8961 -3.5883 23 6 1.4348 4.8269 0.6120 24 6 2.1720 -1.1517 -0.0005 25 6 3.6772 -1.3190 -0.0072 26 6 3.9586 -2.8359 -0.0114 27 6 2.6648 -3.4466 -0.6072 28 6 1.5626 -2.5425 -0.0017 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5139 32 1 0.5986 2.4411 0.0005 33 1 3.6118 3.9344 -1.7316 34 1 1.8799 3.7084 -2.1421 35 1 2.1171 6.0973 -2.3608 36 1 3.2520 6.1940 -0.9753 37 1 2.0200 7.3469 0.7754 38 1 0.2424 7.3056 0.6943 39 1 1.0965 9.8160 0.2145 40 1 1.0420 13.1480 0.0279 41 1 1.9540 5.2794 1.4569 42 1 0.4775 4.4191 0.9362 43 1 4.0993 -0.8574 -0.8999 44 1 4.1064 -0.8650 0.8859 45 1 4.1233 -3.2017 1.0021 46 1 4.8164 -3.0643 -0.6440 47 1 2.5394 -4.4801 -0.2842 48 1 2.6662 -3.3797 -1.6952 49 1 1.3292 -2.8567 1.0156 50 1 0.6662 -2.5650 -0.6213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479949003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:04 Heat of formation + Delta-G solvation = -83.094958 kcal Electronic energy + Delta-G solvation = -28514.049905 eV Core-core repulsion = 24539.825998 eV Total energy + Delta-G solvation = -3974.223907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35166 -40.54170 -39.29227 -38.47123 -36.06241 -35.41654 -34.35809 -33.32969 -32.05724 -29.84393 -29.62029 -28.50459 -27.96214 -26.07918 -25.23048 -22.62009 -22.39419 -21.58754 -21.47356 -21.06078 -19.87598 -19.37315 -17.83649 -17.52120 -17.39183 -16.85215 -16.65020 -16.42671 -16.21804 -15.91022 -15.73012 -15.56739 -15.16407 -14.66205 -14.47291 -14.23278 -14.06847 -14.01253 -13.59800 -13.41343 -13.34934 -13.25897 -13.17444 -13.01577 -12.83588 -12.67528 -12.62962 -12.43079 -12.29312 -12.16124 -12.13389 -11.93705 -11.87592 -11.82893 -11.48602 -11.46412 -10.70121 -10.34216 -10.06379 -9.99033 -9.64604 -9.37530 -8.46845 -5.95416 0.40351 1.39273 1.41480 1.52190 2.03792 2.16559 2.25949 2.29871 2.83631 3.19970 3.28925 3.44901 3.56850 3.75302 3.78850 3.95441 4.09476 4.14162 4.19501 4.25835 4.28480 4.33491 4.39619 4.47509 4.50163 4.54886 4.67939 4.70167 4.76400 4.80348 4.86249 4.86831 4.91516 4.96317 5.05875 5.06747 5.13361 5.20686 5.22877 5.23728 5.40165 5.40968 5.51244 5.52265 5.68797 5.81594 5.90250 6.07715 6.59991 6.60554 7.12551 7.26672 7.55165 8.11117 8.70224 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038902 B = 0.001740 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.587725 B =16085.140392 C =16225.359721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.202 4.202 3 C 0.547 3.453 4 O -0.581 6.581 5 N -0.706 5.706 6 C 0.145 3.855 7 H 0.086 0.914 8 C -0.124 4.124 9 C 0.042 3.958 10 N -0.506 5.506 11 C 0.047 3.953 12 C 0.438 3.562 13 O -0.614 6.614 14 N -0.572 5.572 15 C -0.334 4.334 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.993 3.007 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.033 3.967 24 C -0.040 4.040 25 C -0.094 4.094 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -29.601 6.253 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.205 4.205 3 C 0.338 3.662 4 O -0.463 6.463 5 N -0.358 5.358 6 C 0.039 3.961 7 H 0.104 0.896 8 C -0.163 4.163 9 C -0.086 4.086 10 N -0.231 5.231 11 C -0.085 4.085 12 C 0.226 3.774 13 O -0.501 6.501 14 N -0.209 5.209 15 C -0.463 4.463 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.560 5.560 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.095 4.095 24 C -0.042 4.042 25 C -0.131 4.131 26 C -0.164 4.164 27 C -0.158 4.158 28 C -0.131 4.131 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.889 -29.695 5.333 30.183 hybrid contribution 0.692 1.677 0.177 1.823 sum -0.197 -28.018 5.510 28.555 Atomic orbital electron populations 1.20756 0.88282 1.04096 1.03246 1.20896 0.97614 0.90540 1.11469 1.18833 0.86991 0.85042 0.75323 1.90752 1.15322 1.88253 1.52001 1.45928 1.10835 1.04395 1.74651 1.21628 0.95494 0.83099 0.95907 0.89604 1.22860 1.01735 0.94541 0.97198 1.23247 0.90924 0.95268 0.99148 1.64620 1.41773 1.02407 1.14254 1.22029 1.03912 0.88050 0.94484 1.20714 0.82411 0.83538 0.90770 1.90441 1.56356 1.79844 1.23415 1.41909 1.64847 1.04575 1.09541 1.19630 1.49856 0.87172 0.89668 0.90248 1.26026 0.96271 0.99167 0.99745 1.69665 1.50098 1.17573 1.18687 0.84996 0.78890 0.76887 0.77604 1.19695 1.19492 1.19843 1.23250 1.00966 0.91887 0.93442 1.23045 0.96204 0.95017 0.89957 1.21242 0.92912 0.97180 1.01745 1.22463 0.98723 0.93309 1.01907 1.22536 0.93414 0.99554 1.00341 1.21632 0.98996 0.89397 1.03059 0.90475 0.89534 0.90845 0.74791 0.91222 0.90710 0.89940 0.95228 0.91221 0.86675 0.76992 0.91306 0.91366 0.87504 0.92085 0.91840 0.90537 0.91099 0.89068 0.91357 0.88088 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.16 71.24 0.65 -0.47 16 2 C -0.20 -3.58 6.00 -18.70 -0.11 -3.69 16 3 C 0.55 13.12 7.75 86.57 0.67 13.79 16 4 O -0.58 -18.19 13.76 -4.06 -0.06 -18.25 16 5 N -0.71 -14.56 5.00 -441.97 -2.21 -16.77 16 6 C 0.14 3.52 3.34 45.87 0.15 3.67 16 7 H 0.09 2.28 7.56 -2.39 -0.02 2.26 16 8 C -0.12 -3.56 6.78 31.80 0.22 -3.34 16 9 C 0.04 1.47 5.30 86.65 0.46 1.93 16 10 N -0.51 -16.18 5.26 -887.58 -4.67 -20.85 16 11 C 0.05 1.59 5.52 85.56 0.47 2.07 16 12 C 0.44 20.72 7.49 87.66 0.66 21.37 16 13 O -0.61 -33.35 13.10 -3.07 -0.04 -33.39 16 14 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 15 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 18 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 19 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.03 0.75 6.47 86.45 0.56 1.31 16 24 C -0.04 -0.67 6.12 -17.01 -0.10 -0.78 16 25 C -0.09 -1.81 4.81 30.52 0.15 -1.67 16 26 C -0.13 -1.60 6.88 31.70 0.22 -1.38 16 27 C -0.12 -1.12 6.94 31.91 0.22 -0.90 16 28 C -0.09 -0.90 5.66 30.85 0.17 -0.73 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.62 7.22 -2.39 -0.02 0.60 16 31 H 0.07 0.64 6.70 -2.39 -0.02 0.63 16 32 H 0.41 6.46 6.45 -92.71 -0.60 5.86 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.16 8.06 -2.38 -0.02 2.14 16 35 H 0.08 3.55 5.97 -2.39 -0.01 3.53 16 36 H 0.03 1.06 8.02 -2.38 -0.02 1.04 16 37 H 0.07 2.14 7.81 -2.39 -0.02 2.12 16 38 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 40 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.07 1.43 7.57 -2.38 -0.02 1.42 16 42 H 0.11 1.97 7.65 -2.39 -0.02 1.96 16 43 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 44 H 0.06 1.46 7.68 -2.39 -0.02 1.44 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 0.66 7.68 -2.39 -0.02 0.64 16 Total: -1.00 -71.50 394.26 -0.99 -72.50 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -0.37 Total: 38.96 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.66 Total: 12.89 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -8.22 Total: -117.73 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.10 Total: -51.64 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.50 -0.99 -72.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479949003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds