Wall clock time and date at job start Tue Mar 31 2020 19:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.47095 * 120.00264 * 2 1 4 4 O 1.21613 * 120.00616 * 179.97438 * 3 2 1 5 5 N 1.34779 * 120.00173 * 0.02562 * 3 2 1 6 6 C 1.46498 * 120.00374 * 179.97438 * 5 3 2 7 7 H 1.08994 * 110.87628 * 37.38582 * 6 5 3 8 8 C 1.55136 * 110.99021 * 273.53909 * 6 5 3 9 9 C 1.54316 * 103.02142 * 206.25421 * 8 6 5 10 10 N 1.47445 * 107.22955 * 22.28484 * 9 8 6 11 11 C 1.46902 * 110.99993 * 123.25758 * 10 9 8 12 12 C 1.50702 * 109.47027 * 69.87046 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00499 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99671 * 179.72159 * 15 14 12 18 18 N 1.31414 * 120.00152 * 0.27554 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 180.27723 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00084 * 19 17 15 21 21 H 1.48501 * 109.47062 * 210.00035 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99834 * 19 17 15 23 23 C 1.47847 * 108.56981 * 0.98987 * 10 9 8 24 24 C 1.33002 * 120.00143 * 180.02562 * 2 1 3 25 25 C 1.51441 * 126.34390 * 179.68843 * 24 2 1 26 26 C 1.54273 * 106.85211 * 180.24200 * 25 24 2 27 27 C 1.54982 * 103.66231 * 23.48107 * 26 25 24 28 28 C 1.51843 * 126.33711 * 359.97438 * 24 2 1 29 29 H 1.09006 * 109.47310 * 90.00085 * 1 2 3 30 30 H 1.09007 * 109.47327 * 209.99452 * 1 2 3 31 31 H 1.08999 * 109.47291 * 330.00089 * 1 2 3 32 32 H 0.97008 * 119.99177 * 359.97438 * 5 3 2 33 33 H 1.09003 * 110.70332 * 87.87161 * 8 6 5 34 34 H 1.08996 * 110.85677 * 324.70927 * 8 6 5 35 35 H 1.08996 * 109.89058 * 262.88273 * 9 8 6 36 36 H 1.08994 * 109.88860 * 141.68888 * 9 8 6 37 37 H 1.09004 * 109.47131 * 309.87290 * 11 10 9 38 38 H 1.08994 * 109.47471 * 189.87039 * 11 10 9 39 39 H 0.97000 * 119.99715 * 359.97438 * 14 12 11 40 40 H 0.96991 * 119.99827 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.37141 * 94.73522 * 23 10 9 42 42 H 1.09002 * 110.37215 * 217.07516 * 23 10 9 43 43 H 1.09003 * 109.98309 * 299.73113 * 25 24 2 44 44 H 1.09011 * 109.98491 * 61.02914 * 25 24 2 45 45 H 1.09002 * 110.79828 * 264.85479 * 26 25 24 46 46 H 1.09001 * 110.43352 * 141.93560 * 26 25 24 47 47 H 1.08996 * 110.83170 * 204.48956 * 27 26 25 48 48 H 1.09008 * 110.82697 * 80.91041 * 27 26 25 49 49 H 1.08992 * 110.44723 * 274.92785 * 28 24 2 50 50 H 1.09001 * 110.44339 * 37.45415 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3012 3.7098 0.0011 7 1 3.1961 3.6419 -0.6173 8 6 2.6564 4.1457 1.4469 9 6 2.7649 5.6807 1.3306 10 7 1.9907 6.0844 0.1425 11 6 0.9544 7.0634 0.4971 12 6 1.6045 8.3732 0.8616 13 8 2.8122 8.4807 0.8288 14 7 0.8439 9.4252 1.2241 15 6 1.4353 10.6169 1.5552 16 1 2.5107 10.7129 1.5252 17 6 0.6509 11.7031 1.9234 18 7 -0.6576 11.5866 1.9594 19 14 1.4563 13.3292 2.3670 20 1 1.5970 14.1615 1.1453 21 1 0.6138 14.0445 3.3589 22 1 2.7983 13.0741 2.9496 23 6 1.3924 4.8754 -0.4628 24 6 2.1720 -1.1518 -0.0005 25 6 3.6771 -1.3191 -0.0072 26 6 3.9585 -2.8360 -0.0113 27 6 2.6646 -3.4467 -0.6071 28 6 1.5626 -2.5426 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.5986 2.4411 0.0005 33 1 3.6085 3.7145 1.7565 34 1 1.8645 3.8669 2.1420 35 1 3.8085 5.9706 1.2091 36 1 2.3485 6.1504 2.2217 37 1 0.3807 6.6936 1.3469 38 1 0.2890 7.2123 -0.3533 39 1 -0.1219 9.3393 1.2500 40 1 -1.2051 12.3447 2.2167 41 1 0.3753 4.7320 -0.0979 42 1 1.3991 4.9523 -1.5500 43 1 4.0992 -0.8574 -0.8998 44 1 4.1064 -0.8651 0.8860 45 1 4.1232 -3.2018 1.0022 46 1 4.8159 -3.0622 -0.6452 47 1 2.5394 -4.4801 -0.2840 48 1 2.6684 -3.3771 -1.6949 49 1 1.3298 -2.8564 1.0169 50 1 0.6669 -2.5658 -0.6214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479949004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:06 Heat of formation + Delta-G solvation = -87.359139 kcal Electronic energy + Delta-G solvation = -28420.047800 eV Core-core repulsion = 24445.638984 eV Total energy + Delta-G solvation = -3974.408816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34007 -40.48025 -39.33283 -38.52644 -36.01425 -35.49427 -34.36485 -33.28131 -32.02785 -29.84704 -29.74849 -28.51365 -27.95956 -26.09311 -25.25082 -22.70572 -22.37476 -21.66685 -21.56196 -20.80528 -19.84162 -19.40216 -17.75441 -17.68081 -17.44911 -16.84415 -16.63367 -16.51291 -16.31236 -15.80473 -15.65690 -15.55927 -14.82428 -14.69887 -14.53402 -14.44104 -14.23297 -13.86573 -13.76858 -13.56296 -13.36640 -13.29252 -13.23711 -12.97213 -12.80616 -12.74432 -12.50395 -12.42287 -12.34907 -12.17567 -12.11998 -11.94379 -11.86390 -11.80585 -11.49265 -11.48975 -10.73931 -10.32804 -10.20126 -9.99480 -9.67011 -9.25657 -8.45932 -5.94167 0.39128 1.37958 1.41565 1.54022 2.03371 2.07369 2.24906 2.30363 2.87453 3.20923 3.31069 3.45554 3.52295 3.73832 3.74820 3.93403 4.00404 4.13470 4.18517 4.24221 4.26800 4.31714 4.33580 4.43515 4.49727 4.52285 4.62813 4.69703 4.79307 4.81243 4.86458 4.89056 4.91470 4.95126 4.98570 5.05699 5.12913 5.14938 5.20363 5.23678 5.39676 5.41674 5.44060 5.51538 5.67648 5.84510 5.98025 6.09719 6.57691 6.62432 7.14496 7.25575 7.58040 8.14745 8.71465 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039482 B = 0.001728 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.019935 B =16203.746061 C =16628.154435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.201 4.201 3 C 0.548 3.452 4 O -0.580 6.580 5 N -0.704 5.704 6 C 0.147 3.853 7 H 0.081 0.919 8 C -0.140 4.140 9 C 0.063 3.937 10 N -0.527 5.527 11 C 0.055 3.945 12 C 0.439 3.561 13 O -0.618 6.618 14 N -0.574 5.574 15 C -0.333 4.333 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.275 1.275 23 C 0.045 3.955 24 C -0.040 4.040 25 C -0.095 4.095 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.094 4.094 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.415 0.585 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -31.335 -4.108 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.204 4.204 3 C 0.338 3.662 4 O -0.462 6.462 5 N -0.357 5.357 6 C 0.041 3.959 7 H 0.099 0.901 8 C -0.180 4.180 9 C -0.066 4.066 10 N -0.252 5.252 11 C -0.076 4.076 12 C 0.226 3.774 13 O -0.504 6.504 14 N -0.212 5.212 15 C -0.463 4.463 16 H 0.094 0.906 17 C -0.212 4.212 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.200 1.200 23 C -0.082 4.082 24 C -0.042 4.042 25 C -0.132 4.132 26 C -0.165 4.165 27 C -0.158 4.158 28 C -0.130 4.130 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.254 0.746 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.723 -30.856 -4.442 31.293 hybrid contribution -0.562 1.132 0.926 1.566 sum -3.285 -29.724 -3.516 30.111 Atomic orbital electron populations 1.20764 0.88023 1.04054 1.03497 1.20890 0.97722 0.90342 1.11483 1.18853 0.86976 0.85028 0.75301 1.90775 1.15503 1.88217 1.51672 1.45681 1.10831 1.04188 1.74997 1.21781 0.95504 0.82766 0.95859 0.90116 1.23092 1.02720 0.94482 0.97676 1.22519 0.98885 0.93784 0.91366 1.63111 1.23117 1.11198 1.27744 1.21953 0.93318 0.90050 1.02283 1.20847 0.87572 0.86649 0.82290 1.90502 1.16213 1.84951 1.58690 1.41908 1.09279 1.09979 1.60070 1.19639 0.93340 0.89032 1.44255 0.90568 1.25994 0.95879 1.02468 0.96812 1.69662 1.04406 1.33587 1.48395 0.84955 0.77898 0.77281 0.78350 1.19680 1.19434 1.20013 1.23275 0.97209 0.86577 1.01163 1.23053 0.96116 0.95108 0.89937 1.21250 0.93053 0.97189 1.01700 1.22472 0.98861 0.93332 1.01839 1.22547 0.93300 0.99526 1.00409 1.21639 0.99069 0.89329 1.03006 0.89923 0.89722 0.90860 0.74619 0.91377 0.89842 0.92709 0.93860 0.90753 0.86671 0.76944 0.91321 0.90138 0.88489 0.91943 0.92122 0.90734 0.91080 0.89113 0.91148 0.88254 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.16 71.23 0.65 -0.24 16 2 C -0.20 -3.29 6.00 -18.71 -0.11 -3.40 16 3 C 0.55 12.52 7.75 86.57 0.67 13.20 16 4 O -0.58 -18.10 13.85 -4.07 -0.06 -18.15 16 5 N -0.70 -13.09 5.18 -439.60 -2.28 -15.37 16 6 C 0.15 3.49 3.31 46.38 0.15 3.65 16 7 H 0.08 2.34 7.73 -2.39 -0.02 2.32 16 8 C -0.14 -3.68 6.64 31.77 0.21 -3.47 16 9 C 0.06 2.11 5.65 86.65 0.49 2.60 16 10 N -0.53 -17.23 4.85 -890.10 -4.32 -21.55 16 11 C 0.06 1.87 5.03 85.56 0.43 2.30 16 12 C 0.44 21.15 7.43 87.66 0.65 21.80 16 13 O -0.62 -35.09 15.12 -3.07 -0.05 -35.13 16 14 N -0.57 -29.61 5.29 -306.97 -1.62 -31.23 16 15 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 16 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 18 N -0.92 -49.54 13.05 21.67 0.28 -49.25 16 19 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.05 1.02 6.31 86.77 0.55 1.57 16 24 C -0.04 -0.64 6.12 -17.01 -0.10 -0.74 16 25 C -0.09 -1.81 4.81 30.52 0.15 -1.66 16 26 C -0.13 -1.59 6.87 31.70 0.22 -1.37 16 27 C -0.12 -1.03 6.94 31.92 0.22 -0.80 16 28 C -0.09 -0.82 5.66 30.87 0.17 -0.64 16 29 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.48 7.22 -2.38 -0.02 0.47 16 31 H 0.07 0.48 6.70 -2.39 -0.02 0.46 16 32 H 0.42 4.97 6.62 -92.70 -0.61 4.35 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.55 7.31 -2.39 -0.02 1.53 16 37 H 0.07 2.18 7.96 -2.38 -0.02 2.17 16 38 H 0.12 3.32 8.07 -2.39 -0.02 3.31 16 39 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 40 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 42 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 1.45 7.67 -2.39 -0.02 1.44 16 44 H 0.06 1.42 7.68 -2.38 -0.02 1.40 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 47 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.09 0.55 7.69 -2.39 -0.02 0.53 16 Total: -1.00 -75.52 398.17 -0.77 -76.29 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.39 Total: 34.70 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.63 Total: 14.30 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -7.93 Total: -117.40 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.29 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.52 -0.77 -76.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479949004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.066 kcal (2) G-P(sol) polarization free energy of solvation -75.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds