Wall clock time and date at job start Tue Mar 31 2020 19:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 C 1.50701 * 112.84840 * 55.05046 * 3 2 1 5 5 O 1.21280 * 119.99750 * 246.68595 * 4 3 2 6 6 N 1.34769 * 119.99653 * 66.69108 * 4 3 2 7 7 C 1.47862 * 126.93165 * 354.68503 * 6 4 3 8 8 C 1.56003 * 105.12689 * 181.84523 * 7 6 4 9 9 H 1.08995 * 116.83349 * 159.41984 * 8 7 6 10 10 C 1.57090 * 99.47579 * 33.13257 * 8 7 6 11 11 C 1.49288 * 126.92516 * 175.00291 * 6 4 3 12 12 H 1.08993 * 116.12484 * 16.83488 * 11 6 4 13 13 C 1.56008 * 104.12911 * 247.71830 * 11 6 4 14 14 N 1.49714 * 104.28829 * 289.11902 * 8 7 6 15 15 C 1.46900 * 111.00143 * 306.04675 * 14 8 7 16 16 C 1.50692 * 109.47077 * 196.33703 * 15 14 8 17 17 O 1.21296 * 120.00404 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00263 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00451 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99854 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99762 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46726 * 60.00063 * 23 21 19 25 25 H 1.48502 * 109.47002 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47155 * 300.00100 * 23 21 19 27 27 C 1.53780 * 113.61226 * 283.85861 * 3 2 1 28 28 C 1.53960 * 87.01667 * 220.04746 * 27 3 2 29 29 C 1.53774 * 113.61327 * 186.25133 * 3 2 1 30 30 H 1.09000 * 109.46812 * 174.91805 * 1 2 3 31 31 H 1.08997 * 109.47012 * 294.91672 * 1 2 3 32 32 H 1.08992 * 109.47225 * 54.91644 * 1 2 3 33 33 H 1.08998 * 109.47474 * 120.00242 * 2 1 3 34 34 H 1.08999 * 109.46912 * 240.00266 * 2 1 3 35 35 H 1.09002 * 110.31543 * 300.86874 * 7 6 4 36 36 H 1.09002 * 110.31228 * 63.04687 * 7 6 4 37 37 H 1.09001 * 112.35365 * 191.56315 * 10 8 7 38 38 H 1.09001 * 112.42985 * 64.17845 * 10 8 7 39 39 H 1.09001 * 110.31937 * 47.69806 * 13 11 6 40 40 H 1.09003 * 110.32144 * 169.89254 * 13 11 6 41 41 H 1.08999 * 109.47225 * 316.34135 * 15 14 8 42 42 H 1.08997 * 109.46948 * 76.33695 * 15 14 8 43 43 H 0.97004 * 119.99319 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99237 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.61602 * 334.56009 * 27 3 2 46 46 H 1.08997 * 113.61797 * 105.47344 * 27 3 2 47 47 H 1.08994 * 113.53573 * 270.80769 * 28 27 3 48 48 H 1.09005 * 113.66629 * 139.93268 * 28 27 3 49 49 H 1.09002 * 113.61316 * 254.52350 * 29 3 2 50 50 H 1.08997 * 113.61932 * 25.42680 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4850 2.2594 1.1383 5 8 0.7311 3.1820 0.9114 6 7 1.8265 1.9647 2.4083 7 6 2.6388 0.8173 2.8664 8 6 2.6778 0.9411 4.4211 9 1 2.9195 0.0375 4.9806 10 6 1.2546 1.5590 4.6671 11 6 1.4554 2.7275 3.6368 12 1 0.6298 3.4315 3.5335 13 6 2.8079 3.3202 4.1401 14 7 3.5528 2.1290 4.6753 15 6 4.8492 1.9821 4.0002 16 6 5.8330 2.9637 4.5826 17 8 5.4883 3.7119 5.4730 18 7 7.0962 3.0098 4.1150 19 6 7.9914 3.9025 4.6452 20 1 7.6842 4.5692 5.4374 21 6 9.2935 3.9503 4.1627 22 7 9.6670 3.1395 3.1984 23 14 10.5131 5.1672 4.8847 24 1 10.6779 4.9005 6.3363 25 1 11.8237 5.0183 4.2026 26 1 10.0072 6.5497 4.6898 27 6 1.9271 2.1358 -1.3680 28 6 3.3045 2.7586 -1.0760 29 6 3.5658 1.5564 -0.1534 30 1 -0.3633 -1.0236 -0.0910 31 1 -0.3633 0.4329 0.9320 32 1 -0.3633 0.5906 -0.8409 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.1687 -0.1209 2.5716 36 1 3.6475 0.8807 2.4582 37 1 1.1311 1.9224 5.6873 38 1 0.4513 0.8823 4.3754 39 1 3.3472 3.7861 3.3153 40 1 2.6311 4.0448 4.9350 41 1 5.2204 0.9673 4.1432 42 1 4.7281 2.1778 2.9348 43 1 7.3721 2.4108 3.4037 44 1 10.5759 3.1732 2.8613 45 1 1.9307 1.4435 -2.2100 46 1 1.1195 2.8657 -1.4224 47 1 3.2486 3.7104 -0.5478 48 1 3.9620 2.7935 -1.9447 49 1 4.0792 1.8194 0.7715 50 1 4.0183 0.7055 -0.6626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481677394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:12 Heat of formation + Delta-G solvation = -7.621327 kcal Electronic energy + Delta-G solvation = -31085.084859 eV Core-core repulsion = 27114.133734 eV Total energy + Delta-G solvation = -3970.951125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54867 -39.98701 -37.95516 -37.18812 -34.17380 -33.62544 -32.88617 -31.36831 -30.88031 -29.83254 -26.73981 -26.34220 -25.79987 -25.08326 -24.15104 -22.74304 -21.67995 -20.69314 -20.05317 -19.26870 -18.33478 -17.76256 -16.78577 -16.74992 -15.99759 -15.87677 -15.45215 -15.03882 -14.86544 -14.51285 -14.27626 -13.99757 -13.80092 -13.73298 -13.33685 -13.13388 -12.90035 -12.71067 -12.59906 -12.36015 -12.19289 -12.09511 -12.04605 -11.75014 -11.64829 -11.52312 -11.34425 -11.24533 -11.19893 -11.08207 -10.97008 -10.82510 -10.43657 -10.34338 -10.31452 -10.20292 -9.76060 -9.47893 -8.84825 -8.43153 -7.95812 -7.91364 -6.40601 -3.81145 2.54537 2.73542 3.20775 3.26215 3.30589 3.76857 3.91901 4.10952 4.18020 4.21378 4.32041 4.38074 4.49336 4.64968 4.68756 4.73815 4.89089 4.93315 5.02927 5.07758 5.16845 5.23334 5.26453 5.31361 5.44166 5.50321 5.54278 5.57792 5.62342 5.67888 5.69202 5.72549 5.73615 5.75993 5.77742 5.84799 5.92500 5.95032 5.99453 6.04839 6.07063 6.21973 6.27158 6.31873 6.87915 7.09049 7.44628 7.56049 8.07158 8.09055 8.63427 9.19797 9.55777 10.08283 10.77192 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.003427 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.985578 B = 8167.646318 C = 9289.770077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.104 4.104 4 C 0.562 3.438 5 O -0.540 6.540 6 N -0.616 5.616 7 C 0.059 3.941 8 C 0.051 3.949 9 H 0.135 0.865 10 C -0.131 4.131 11 C 0.106 3.894 12 H 0.123 0.877 13 C 0.042 3.958 14 N -0.485 5.485 15 C 0.035 3.965 16 C 0.445 3.555 17 O -0.574 6.574 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.116 4.116 28 C -0.142 4.142 29 C -0.127 4.127 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 -10.371 -7.535 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.107 4.107 4 C 0.351 3.649 5 O -0.417 6.417 6 N -0.351 5.351 7 C -0.065 4.065 8 C -0.058 4.058 9 H 0.153 0.847 10 C -0.169 4.169 11 C 0.003 3.997 12 H 0.141 0.859 13 C -0.086 4.086 14 N -0.209 5.209 15 C -0.097 4.097 16 C 0.230 3.770 17 O -0.457 6.457 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.154 4.154 28 C -0.180 4.180 29 C -0.165 4.165 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.445 -9.284 -6.691 20.035 hybrid contribution 0.924 0.011 -1.075 1.417 sum -15.521 -9.272 -7.766 19.677 Atomic orbital electron populations 1.21748 0.95363 1.01548 1.02260 1.21526 0.96389 0.93567 1.02835 1.21993 0.97682 0.96018 0.95019 1.19552 0.79891 0.83662 0.81803 1.90676 1.36117 1.31313 1.83578 1.49180 1.52563 1.27923 1.05414 1.23468 0.96356 0.89526 0.97184 1.24779 0.93449 0.95812 0.91728 0.84697 1.23899 0.95968 0.96956 1.00072 1.24164 0.98200 0.94770 0.82598 0.85879 1.23989 0.91904 0.93541 0.99212 1.65248 1.01107 1.01118 1.53390 1.22128 0.90879 1.00477 0.96232 1.19716 0.83282 0.87370 0.86653 1.90523 1.78196 1.44528 1.32481 1.41841 1.08679 1.34975 1.34854 1.19634 0.90423 1.14523 1.18177 0.88045 1.25230 0.97960 0.98165 0.96515 1.69601 1.19704 1.38031 1.27135 0.85942 0.78976 0.80433 0.79017 1.19899 1.20995 1.19948 1.22885 0.98575 0.99638 0.94273 1.22870 0.97113 0.98013 0.99958 1.23029 0.93158 0.99492 1.00772 0.92517 0.92981 0.92298 0.91208 0.90776 0.90799 0.90045 0.88429 0.90054 0.91942 0.88806 0.89457 0.93067 0.77644 0.91887 0.89480 0.90105 0.90115 0.90871 0.91033 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.50 37.16 0.35 -0.97 16 2 C -0.11 -0.89 5.21 -26.73 -0.14 -1.03 16 3 C -0.10 -1.11 0.40 -154.85 -0.06 -1.17 16 4 C 0.56 7.60 5.39 -10.99 -0.06 7.54 16 5 O -0.54 -9.13 16.30 5.56 0.09 -9.04 16 6 N -0.62 -7.54 2.94 -156.81 -0.46 -8.00 16 7 C 0.06 0.60 4.82 -1.69 -0.01 0.60 16 8 C 0.05 0.55 5.19 -62.31 -0.32 0.23 16 9 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.13 -1.31 6.81 -22.30 -0.15 -1.46 16 11 C 0.11 1.31 5.18 -62.56 -0.32 0.99 16 12 H 0.12 1.54 8.04 -51.93 -0.42 1.12 16 13 C 0.04 0.64 5.69 -0.27 0.00 0.64 16 14 N -0.48 -7.47 4.84 -216.37 -1.05 -8.52 16 15 C 0.03 0.59 4.09 -4.98 -0.02 0.57 16 16 C 0.44 10.37 7.67 -10.99 -0.08 10.29 16 17 O -0.57 -15.51 15.59 5.54 0.09 -15.43 16 18 N -0.57 -14.21 5.29 -10.97 -0.06 -14.26 16 19 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.12 -1.21 6.82 -25.83 -0.18 -1.39 16 28 C -0.14 -1.59 7.81 -25.83 -0.20 -1.80 16 29 C -0.13 -1.34 6.74 -25.92 -0.17 -1.51 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.53 7.48 -51.93 -0.39 0.14 16 32 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 33 H 0.07 0.55 5.51 -51.93 -0.29 0.26 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.07 0.62 6.08 -51.93 -0.32 0.30 16 36 H 0.08 0.89 4.03 -51.93 -0.21 0.68 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.10 7.49 -51.93 -0.39 0.72 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 42 H 0.05 0.82 5.82 -51.93 -0.30 0.52 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 46 H 0.08 0.98 7.34 -51.93 -0.38 0.60 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.86 6.19 -51.93 -0.32 0.54 16 50 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -32.93 383.82 -9.40 -42.34 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -7.89 Total: 11.14 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.61 Total: 3.60 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.84 Total: -54.46 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.18 Total: -24.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.93 -9.40 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481677394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.716 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds