Wall clock time and date at job start Tue Mar 31 2020 19:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 C 1.50701 * 112.84840 * 55.05046 * 3 2 1 5 5 O 1.21280 * 119.99750 * 246.68595 * 4 3 2 6 6 N 1.34769 * 119.99653 * 66.69108 * 4 3 2 7 7 C 1.47862 * 126.93165 * 354.68503 * 6 4 3 8 8 C 1.56003 * 105.12689 * 181.84523 * 7 6 4 9 9 H 1.08995 * 116.83349 * 159.41984 * 8 7 6 10 10 C 1.57090 * 99.47579 * 33.13257 * 8 7 6 11 11 C 1.49288 * 126.92516 * 175.00291 * 6 4 3 12 12 H 1.08993 * 116.12484 * 16.83488 * 11 6 4 13 13 C 1.56008 * 104.12911 * 247.71830 * 11 6 4 14 14 N 1.49714 * 104.28829 * 289.11902 * 8 7 6 15 15 C 1.46900 * 111.00143 * 306.04675 * 14 8 7 16 16 C 1.50692 * 109.47077 * 196.33703 * 15 14 8 17 17 O 1.21296 * 120.00404 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00263 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00451 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99854 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99762 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46726 * 60.00063 * 23 21 19 25 25 H 1.48502 * 109.47002 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47155 * 300.00100 * 23 21 19 27 27 C 1.53780 * 113.61226 * 283.85861 * 3 2 1 28 28 C 1.53960 * 87.01667 * 220.04746 * 27 3 2 29 29 C 1.53774 * 113.61327 * 186.25133 * 3 2 1 30 30 H 1.09000 * 109.46812 * 174.91805 * 1 2 3 31 31 H 1.08997 * 109.47012 * 294.91672 * 1 2 3 32 32 H 1.08992 * 109.47225 * 54.91644 * 1 2 3 33 33 H 1.08998 * 109.47474 * 120.00242 * 2 1 3 34 34 H 1.08999 * 109.46912 * 240.00266 * 2 1 3 35 35 H 1.09002 * 110.31543 * 300.86874 * 7 6 4 36 36 H 1.09002 * 110.31228 * 63.04687 * 7 6 4 37 37 H 1.09001 * 112.35365 * 191.56315 * 10 8 7 38 38 H 1.09001 * 112.42985 * 64.17845 * 10 8 7 39 39 H 1.09001 * 110.31937 * 47.69806 * 13 11 6 40 40 H 1.09003 * 110.32144 * 169.89254 * 13 11 6 41 41 H 1.08999 * 109.47225 * 316.34135 * 15 14 8 42 42 H 1.08997 * 109.46948 * 76.33695 * 15 14 8 43 43 H 0.97004 * 119.99319 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99237 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.61602 * 334.56009 * 27 3 2 46 46 H 1.08997 * 113.61797 * 105.47344 * 27 3 2 47 47 H 1.08994 * 113.53573 * 270.80769 * 28 27 3 48 48 H 1.09005 * 113.66629 * 139.93268 * 28 27 3 49 49 H 1.09002 * 113.61316 * 254.52350 * 29 3 2 50 50 H 1.08997 * 113.61932 * 25.42680 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4850 2.2594 1.1383 5 8 0.7311 3.1820 0.9114 6 7 1.8265 1.9647 2.4083 7 6 2.6388 0.8173 2.8664 8 6 2.6778 0.9411 4.4211 9 1 2.9195 0.0375 4.9806 10 6 1.2546 1.5590 4.6671 11 6 1.4554 2.7275 3.6368 12 1 0.6298 3.4315 3.5335 13 6 2.8079 3.3202 4.1401 14 7 3.5528 2.1290 4.6753 15 6 4.8492 1.9821 4.0002 16 6 5.8330 2.9637 4.5826 17 8 5.4883 3.7119 5.4730 18 7 7.0962 3.0098 4.1150 19 6 7.9914 3.9025 4.6452 20 1 7.6842 4.5692 5.4374 21 6 9.2935 3.9503 4.1627 22 7 9.6670 3.1395 3.1984 23 14 10.5131 5.1672 4.8847 24 1 10.6779 4.9005 6.3363 25 1 11.8237 5.0183 4.2026 26 1 10.0072 6.5497 4.6898 27 6 1.9271 2.1358 -1.3680 28 6 3.3045 2.7586 -1.0760 29 6 3.5658 1.5564 -0.1534 30 1 -0.3633 -1.0236 -0.0910 31 1 -0.3633 0.4329 0.9320 32 1 -0.3633 0.5906 -0.8409 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.1687 -0.1209 2.5716 36 1 3.6475 0.8807 2.4582 37 1 1.1311 1.9224 5.6873 38 1 0.4513 0.8823 4.3754 39 1 3.3472 3.7861 3.3153 40 1 2.6311 4.0448 4.9350 41 1 5.2204 0.9673 4.1432 42 1 4.7281 2.1778 2.9348 43 1 7.3721 2.4108 3.4037 44 1 10.5759 3.1732 2.8613 45 1 1.9307 1.4435 -2.2100 46 1 1.1195 2.8657 -1.4224 47 1 3.2486 3.7104 -0.5478 48 1 3.9620 2.7935 -1.9447 49 1 4.0792 1.8194 0.7715 50 1 4.0183 0.7055 -0.6626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481677394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:11 Heat of formation + Delta-G solvation = -30.714430 kcal Electronic energy + Delta-G solvation = -31086.086251 eV Core-core repulsion = 27114.133734 eV Total energy + Delta-G solvation = -3971.952517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54714 -41.00602 -39.76172 -38.26262 -36.00588 -34.96919 -33.66830 -33.26094 -32.11291 -30.85326 -28.20538 -27.29531 -26.67084 -26.21530 -25.73122 -23.68402 -22.53651 -21.64972 -21.38449 -20.67966 -19.93413 -19.24340 -18.06456 -17.79663 -17.25990 -16.89099 -16.58599 -16.55640 -16.20156 -15.91135 -15.53853 -15.21443 -15.19126 -14.80062 -14.61652 -14.09078 -13.89377 -13.83423 -13.68232 -13.58177 -13.47574 -13.37973 -13.13982 -12.93615 -12.89656 -12.60688 -12.52648 -12.43407 -12.31987 -12.18804 -12.13517 -12.08350 -11.98243 -11.81006 -11.49089 -11.18952 -11.09864 -10.79814 -10.36231 -9.99596 -9.81002 -9.17933 -8.45982 -5.94213 1.38841 1.40538 1.51030 1.52237 1.78878 2.07163 2.27410 2.63620 3.18485 3.21710 3.31735 3.36608 3.48923 3.53072 3.63386 3.66319 3.81931 3.91056 3.95036 4.13690 4.20312 4.26737 4.28559 4.36346 4.47682 4.50872 4.51937 4.54767 4.67773 4.74885 4.76434 4.82483 4.89023 4.90932 4.93234 4.95397 5.01631 5.02657 5.07370 5.09957 5.18464 5.26670 5.34488 5.40859 5.43869 5.68433 5.83847 6.06483 6.47055 6.62014 7.06607 7.14348 7.57921 8.14838 8.71129 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.003427 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.985578 B = 8167.646318 C = 9289.770077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.101 4.101 4 C 0.554 3.446 5 O -0.586 6.586 6 N -0.615 5.615 7 C 0.059 3.941 8 C 0.057 3.943 9 H 0.168 0.832 10 C -0.113 4.113 11 C 0.104 3.896 12 H 0.116 0.884 13 C 0.045 3.955 14 N -0.505 5.505 15 C 0.053 3.947 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.575 5.575 19 C -0.334 4.334 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.989 3.011 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.111 4.111 28 C -0.151 4.151 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.061 0.939 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.117 0.883 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.053 0.947 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 -13.699 -8.275 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.104 4.104 4 C 0.344 3.656 5 O -0.466 6.466 6 N -0.349 5.349 7 C -0.064 4.064 8 C -0.050 4.050 9 H 0.185 0.815 10 C -0.152 4.152 11 C 0.000 4.000 12 H 0.134 0.866 13 C -0.084 4.084 14 N -0.229 5.229 15 C -0.079 4.079 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.813 3.187 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.201 1.201 27 C -0.148 4.148 28 C -0.189 4.189 29 C -0.157 4.157 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.135 0.865 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.467 -12.659 -7.435 22.061 hybrid contribution 0.891 1.108 -0.824 1.644 sum -15.576 -11.551 -8.260 21.077 Atomic orbital electron populations 1.21728 0.95725 1.02419 1.00832 1.21570 0.95953 0.91656 1.04603 1.21990 0.97641 0.97160 0.93604 1.20176 0.79315 0.83341 0.82738 1.90649 1.38331 1.33336 1.84296 1.49251 1.52295 1.28282 1.05026 1.23604 0.96242 0.89945 0.96598 1.25071 0.92449 0.94967 0.92539 0.81483 1.23869 0.96352 0.95751 0.99185 1.24097 0.96170 0.95843 0.83874 0.86582 1.23797 0.93478 0.93737 0.97366 1.65149 1.01216 1.02897 1.53645 1.21922 0.90144 0.99674 0.96126 1.20890 0.83457 0.87415 0.85587 1.90490 1.78954 1.46424 1.34404 1.41902 1.09247 1.34937 1.35175 1.19581 0.91942 1.15866 1.18933 0.90652 1.25963 0.98901 0.99543 0.96604 1.69654 1.20347 1.38591 1.27370 0.85055 0.77195 0.78049 0.78444 1.19638 1.19323 1.20081 1.22913 0.96921 0.99579 0.95412 1.22867 0.98401 0.97069 1.00553 1.23062 0.92905 0.99824 0.99878 0.90452 0.94877 0.93310 0.89936 0.88411 0.87411 0.90383 0.88255 0.87419 0.95296 0.90888 0.86327 0.92113 0.77084 0.91321 0.86504 0.92553 0.93534 0.89439 0.92844 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.50 71.98 0.68 -1.52 16 2 C -0.10 -1.32 5.21 30.60 0.16 -1.16 16 3 C -0.10 -1.98 0.40 -52.40 -0.02 -2.00 16 4 C 0.55 14.95 5.39 87.66 0.47 15.42 16 5 O -0.59 -20.76 16.30 -3.03 -0.05 -20.81 16 6 N -0.62 -14.50 2.94 -768.43 -2.26 -16.75 16 7 C 0.06 1.03 4.82 87.16 0.42 1.45 16 8 C 0.06 1.05 5.19 46.84 0.24 1.30 16 9 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 10 C -0.11 -1.99 6.81 33.46 0.23 -1.76 16 11 C 0.10 2.58 5.18 46.92 0.24 2.83 16 12 H 0.12 3.04 8.04 -2.39 -0.02 3.03 16 13 C 0.04 1.45 5.69 86.67 0.49 1.94 16 14 N -0.50 -15.18 4.84 -838.48 -4.06 -19.24 16 15 C 0.05 1.75 4.09 85.55 0.35 2.10 16 16 C 0.44 21.00 7.67 87.65 0.67 21.67 16 17 O -0.62 -34.75 15.59 -3.08 -0.05 -34.80 16 18 N -0.57 -29.54 5.29 -306.99 -1.62 -31.17 16 19 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 23 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.11 -2.21 6.82 31.18 0.21 -1.99 16 28 C -0.15 -3.38 7.81 31.18 0.24 -3.13 16 29 C -0.12 -2.29 6.74 31.12 0.21 -2.08 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.61 7.48 -2.39 -0.02 0.59 16 32 H 0.05 0.81 7.89 -2.39 -0.02 0.79 16 33 H 0.08 0.88 5.51 -2.39 -0.01 0.87 16 34 H 0.10 0.89 8.08 -2.39 -0.02 0.87 16 35 H 0.11 1.24 6.08 -2.39 -0.01 1.22 16 36 H 0.08 1.47 4.03 -2.39 -0.01 1.46 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.03 1.10 7.49 -2.39 -0.02 1.08 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 41 H 0.12 3.21 8.00 -2.39 -0.02 3.19 16 42 H 0.06 1.93 5.82 -2.39 -0.01 1.92 16 43 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 44 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.12 1.62 8.05 -2.39 -0.02 1.60 16 46 H 0.06 1.41 7.34 -2.39 -0.02 1.39 16 47 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.05 1.23 6.19 -2.39 -0.01 1.22 16 50 H 0.12 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -76.22 383.82 0.39 -75.83 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.23 Total: 36.02 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 5.89 Total: 14.66 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -7.66 Total: -116.23 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.10 Total: -55.61 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.22 0.39 -75.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481677394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.117 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds