Wall clock time and date at job start Tue Mar 31 2020 19:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.80636 * 2 1 4 4 O 1.20915 * 111.60812 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56461 * 359.76124 * 4 3 2 6 6 C 1.50703 * 126.77502 * 180.28890 * 5 4 3 7 7 C 1.35446 * 106.44537 * 0.38229 * 5 4 3 8 8 C 1.50702 * 128.00416 * 179.91495 * 7 5 4 9 9 C 1.53008 * 109.46932 * 269.67398 * 8 7 5 10 10 C 1.50693 * 109.46994 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00270 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00163 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00550 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46996 * 35.00080 * 13 12 10 15 15 C 1.53000 * 109.47461 * 155.00335 * 13 12 10 16 16 C 1.52994 * 109.47239 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47408 * 299.99821 * 16 15 13 18 18 H 1.08999 * 109.47237 * 300.00429 * 17 16 15 19 19 N 1.46498 * 109.47531 * 179.97438 * 17 16 15 20 20 C 1.36935 * 120.00239 * 154.99895 * 19 17 16 21 21 H 1.07998 * 119.99613 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00008 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00103 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 359.72443 * 22 20 19 25 25 H 1.48501 * 109.47085 * 270.27640 * 24 22 20 26 26 H 1.48497 * 109.46789 * 30.27649 * 24 22 20 27 27 H 1.48490 * 109.47245 * 150.27799 * 24 22 20 28 28 C 1.53000 * 109.46775 * 59.99895 * 17 16 15 29 29 C 1.53001 * 109.46950 * 275.00545 * 13 12 10 30 30 H 1.09007 * 109.46968 * 269.97437 * 1 2 3 31 31 H 1.09007 * 109.46965 * 29.97124 * 1 2 3 32 32 H 1.08997 * 109.47804 * 149.97468 * 1 2 3 33 33 H 1.08993 * 109.47124 * 270.11389 * 6 5 4 34 34 H 1.09003 * 109.47270 * 30.11396 * 6 5 4 35 35 H 1.09004 * 109.46843 * 150.10773 * 6 5 4 36 36 H 1.08994 * 109.47227 * 149.68034 * 8 7 5 37 37 H 1.08994 * 109.47634 * 29.67357 * 8 7 5 38 38 H 1.09008 * 109.46560 * 60.00386 * 9 8 7 39 39 H 1.08994 * 109.46928 * 300.00392 * 9 8 7 40 40 H 0.97004 * 119.99857 * 0.02562 * 12 10 9 41 41 H 1.09005 * 109.47224 * 59.99884 * 15 13 12 42 42 H 1.09003 * 109.46619 * 300.00480 * 15 13 12 43 43 H 1.09003 * 109.46997 * 179.97438 * 16 15 13 44 44 H 1.08999 * 109.47272 * 60.00228 * 16 15 13 45 45 H 0.97004 * 119.99747 * 335.00634 * 19 17 16 46 46 H 0.96999 * 120.00174 * 179.72503 * 23 22 20 47 47 H 1.09005 * 109.47224 * 60.00408 * 28 17 16 48 48 H 1.09008 * 109.47230 * 180.02562 * 28 17 16 49 49 H 1.08998 * 109.46943 * 299.99186 * 29 13 12 50 50 H 1.08991 * 109.47152 * 59.99957 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0043 6 6 4.9021 -1.3697 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9590 -2.5864 0.0000 9 6 1.8241 -3.0788 -1.4424 10 6 1.4298 -4.5333 -1.4419 11 8 1.2717 -5.1184 -0.3913 12 7 1.2518 -5.1837 -2.6088 13 6 0.8679 -6.5975 -2.6083 14 1 0.2049 -6.7937 -1.7657 15 6 0.1444 -6.9300 -3.9148 16 6 -0.2570 -8.4064 -3.9140 17 6 0.9959 -9.2755 -3.7895 18 1 1.6592 -9.0798 -4.6320 19 7 0.6115 -10.6892 -3.7881 20 6 1.5066 -11.6425 -4.1944 21 1 2.4961 -11.3523 -4.5154 22 6 1.1422 -12.9819 -4.1936 23 7 2.0027 -13.8984 -4.5836 24 14 -0.5667 -13.4846 -3.6310 25 1 -0.5515 -13.7383 -2.1679 26 1 -1.5283 -12.3945 -3.9344 27 1 -0.9787 -14.7206 -4.3433 28 6 1.7194 -8.9430 -2.4830 29 6 2.1213 -7.4661 -2.4840 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 5.2201 -1.5551 -1.0145 34 1 5.6636 -0.7853 0.5278 35 1 4.7626 -2.3204 0.5261 36 1 1.0053 -2.7038 0.5145 37 1 2.7230 -3.1703 0.5132 38 1 2.7778 -2.9615 -1.9570 39 1 1.0600 -2.4950 -1.9556 40 1 1.3778 -4.7156 -3.4490 41 1 0.8075 -6.7338 -4.7575 42 1 -0.7484 -6.3110 -4.0033 43 1 -0.7728 -8.6431 -4.8446 44 1 -0.9202 -8.6021 -3.0715 45 1 -0.2771 -10.9499 -3.4995 46 1 1.7494 -14.8347 -4.5792 47 1 1.0562 -9.1388 -1.6404 48 1 2.6124 -9.5619 -2.3944 49 1 2.7842 -7.2700 -3.3267 50 1 2.6366 -7.2293 -1.5533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482025944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:05 Heat of formation + Delta-G solvation = 4.699847 kcal Electronic energy + Delta-G solvation = -28447.084861 eV Core-core repulsion = 24476.668022 eV Total energy + Delta-G solvation = -3970.416839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.27829 -40.16833 -38.20558 -36.24830 -35.00166 -34.16273 -33.13379 -32.13936 -30.93494 -30.50550 -29.07910 -28.41415 -27.64244 -25.38010 -23.27607 -22.50257 -21.79595 -20.94592 -20.53271 -20.37019 -19.62725 -18.06121 -17.66832 -17.38662 -16.89656 -16.30121 -15.93389 -15.10936 -14.78017 -14.63752 -14.24511 -14.07670 -13.88609 -13.83140 -13.64637 -13.56490 -13.27446 -13.09440 -13.07375 -12.91055 -12.74856 -12.61595 -12.39355 -12.16837 -11.98947 -11.77046 -11.70048 -11.18740 -11.15706 -10.91474 -10.87974 -10.68578 -10.26881 -10.21827 -10.20721 -9.92165 -9.84139 -9.57938 -9.46156 -9.05000 -8.88382 -7.26011 -5.76672 -3.11953 1.08219 1.80302 2.48866 2.72717 3.04683 3.37717 3.41045 3.45789 3.80342 4.05366 4.34402 4.44867 4.58266 4.59527 4.75884 4.78346 4.85380 4.92078 4.94400 4.96885 5.07677 5.08968 5.12768 5.16902 5.27984 5.36496 5.45189 5.49635 5.50909 5.52944 5.60253 5.61488 5.66632 5.74850 5.76964 5.87069 5.90580 6.09161 6.15882 6.17648 6.33320 6.43936 6.51986 6.61814 6.88133 7.03485 7.36905 7.92665 7.99966 8.09089 8.42663 9.21433 9.94230 10.14166 11.41699 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028918 B = 0.001813 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.033869 B =15441.505276 C =15893.610218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.200 4.200 8 C -0.025 4.025 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.539 6.539 12 N -0.726 5.726 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.118 4.118 16 C -0.124 4.124 17 C 0.182 3.818 18 H 0.055 0.945 19 N -0.750 5.750 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.277 1.277 27 H -0.292 1.292 28 C -0.132 4.132 29 C -0.123 4.123 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 29.937 6.643 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.204 4.204 8 C -0.063 4.063 9 C -0.176 4.176 10 C 0.297 3.703 11 O -0.415 6.415 12 N -0.377 5.377 13 C 0.040 3.960 14 H 0.105 0.895 15 C -0.157 4.157 16 C -0.163 4.163 17 C 0.072 3.928 18 H 0.073 0.927 19 N -0.392 5.392 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.218 1.218 28 C -0.173 4.173 29 C -0.162 4.162 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.094 30.689 7.301 31.546 hybrid contribution -1.155 -1.027 -0.044 1.546 sum -1.061 29.663 7.257 30.556 Atomic orbital electron populations 1.20188 0.85956 1.03795 1.03558 1.23486 0.98949 0.88492 1.02632 1.73847 0.89322 1.23995 1.20310 1.84804 1.21615 1.22584 1.67906 1.24317 0.98330 0.83771 1.02752 1.20389 0.89977 0.98757 1.04271 1.20977 0.91582 0.97521 1.10287 1.19595 1.03751 0.87320 0.95615 1.21650 1.03859 0.93089 0.99026 1.20582 0.76931 0.88819 0.83941 1.90734 1.50567 1.69061 1.31180 1.46189 1.70728 1.12374 1.08374 1.21117 0.96827 0.78897 0.99159 0.89521 1.21733 0.99901 0.97547 0.96517 1.21791 0.99191 0.93083 1.02231 1.20212 0.93324 0.83970 0.95256 0.92737 1.42791 1.14319 1.01712 1.80334 1.19073 0.95597 0.86342 1.36127 0.89241 1.24679 0.97462 0.95699 1.01440 1.69703 1.34455 1.00368 1.53740 0.86546 0.85613 0.77776 0.78573 1.21112 1.20346 1.21820 1.22198 1.01636 0.93216 1.00285 1.21893 0.96712 0.96046 1.01587 0.90063 0.90506 0.89932 0.89244 0.89755 0.88786 0.89614 0.89584 0.88798 0.88903 0.76842 0.91376 0.91857 0.91308 0.92117 0.80703 0.93107 0.92605 0.91307 0.92149 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 36.00 0.37 -0.11 16 2 C 0.02 0.21 7.33 -82.10 -0.60 -0.39 16 3 N -0.37 -3.93 12.07 33.42 0.40 -3.52 16 4 O 0.10 0.92 11.20 17.16 0.19 1.11 16 5 C -0.03 -0.21 7.49 -35.30 -0.26 -0.48 16 6 C -0.08 -0.31 10.30 36.01 0.37 0.06 16 7 C -0.20 -1.57 5.58 -104.42 -0.58 -2.16 16 8 C -0.02 -0.18 4.83 -27.88 -0.13 -0.32 16 9 C -0.14 -0.88 5.68 -27.88 -0.16 -1.04 16 10 C 0.51 5.08 7.79 -10.99 -0.09 5.00 16 11 O -0.54 -7.65 15.64 5.55 0.09 -7.56 16 12 N -0.73 -6.52 5.08 -53.81 -0.27 -6.79 16 13 C 0.14 1.69 2.45 -67.93 -0.17 1.52 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 15 C -0.12 -1.29 5.39 -26.73 -0.14 -1.44 16 16 C -0.12 -1.79 5.39 -26.74 -0.14 -1.93 16 17 C 0.18 3.31 2.77 -67.93 -0.19 3.12 16 18 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 19 N -0.75 -17.34 4.92 -53.43 -0.26 -17.61 16 20 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 23 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 24 Si 0.88 22.06 27.73 -169.99 -4.71 17.34 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 C -0.13 -2.26 5.50 -26.70 -0.15 -2.40 16 29 C -0.12 -1.67 5.50 -26.70 -0.15 -1.82 16 30 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.34 7.44 -51.93 -0.39 -0.05 16 36 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.09 0.66 7.40 -51.93 -0.38 0.28 16 38 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.40 2.42 8.60 -40.82 -0.35 2.07 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -34.81 405.01 -8.48 -43.29 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.52 Total: 5.36 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.27 Total: -9.26 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.64 Total: -56.38 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.28 Total: -6.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.81 -8.48 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482025944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.992 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds