Wall clock time and date at job start Tue Mar 31 2020 19:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30174 * 126.80636 * 2 1 4 4 O 1.20915 * 111.60812 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56461 * 359.76124 * 4 3 2 6 6 C 1.50703 * 126.77502 * 180.28890 * 5 4 3 7 7 C 1.35446 * 106.44537 * 0.38229 * 5 4 3 8 8 C 1.50702 * 128.00416 * 179.91495 * 7 5 4 9 9 C 1.53008 * 109.46932 * 269.67398 * 8 7 5 10 10 C 1.50693 * 109.46994 * 179.97438 * 9 8 7 11 11 O 1.21286 * 120.00270 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00163 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00550 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46996 * 35.00080 * 13 12 10 15 15 C 1.53000 * 109.47461 * 155.00335 * 13 12 10 16 16 C 1.52994 * 109.47239 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47408 * 299.99821 * 16 15 13 18 18 H 1.08999 * 109.47237 * 300.00429 * 17 16 15 19 19 N 1.46498 * 109.47531 * 179.97438 * 17 16 15 20 20 C 1.36935 * 120.00239 * 154.99895 * 19 17 16 21 21 H 1.07998 * 119.99613 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00008 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00103 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 359.72443 * 22 20 19 25 25 H 1.48501 * 109.47085 * 270.27640 * 24 22 20 26 26 H 1.48497 * 109.46789 * 30.27649 * 24 22 20 27 27 H 1.48490 * 109.47245 * 150.27799 * 24 22 20 28 28 C 1.53000 * 109.46775 * 59.99895 * 17 16 15 29 29 C 1.53001 * 109.46950 * 275.00545 * 13 12 10 30 30 H 1.09007 * 109.46968 * 269.97437 * 1 2 3 31 31 H 1.09007 * 109.46965 * 29.97124 * 1 2 3 32 32 H 1.08997 * 109.47804 * 149.97468 * 1 2 3 33 33 H 1.08993 * 109.47124 * 270.11389 * 6 5 4 34 34 H 1.09003 * 109.47270 * 30.11396 * 6 5 4 35 35 H 1.09004 * 109.46843 * 150.10773 * 6 5 4 36 36 H 1.08994 * 109.47227 * 149.68034 * 8 7 5 37 37 H 1.08994 * 109.47634 * 29.67357 * 8 7 5 38 38 H 1.09008 * 109.46560 * 60.00386 * 9 8 7 39 39 H 1.08994 * 109.46928 * 300.00392 * 9 8 7 40 40 H 0.97004 * 119.99857 * 0.02562 * 12 10 9 41 41 H 1.09005 * 109.47224 * 59.99884 * 15 13 12 42 42 H 1.09003 * 109.46619 * 300.00480 * 15 13 12 43 43 H 1.09003 * 109.46997 * 179.97438 * 16 15 13 44 44 H 1.08999 * 109.47272 * 60.00228 * 16 15 13 45 45 H 0.97004 * 119.99747 * 335.00634 * 19 17 16 46 46 H 0.96999 * 120.00174 * 179.72503 * 23 22 20 47 47 H 1.09005 * 109.47224 * 60.00408 * 28 17 16 48 48 H 1.09008 * 109.47230 * 180.02562 * 28 17 16 49 49 H 1.08998 * 109.46943 * 299.99186 * 29 13 12 50 50 H 1.08991 * 109.47152 * 59.99957 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0043 6 6 4.9021 -1.3697 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9590 -2.5864 0.0000 9 6 1.8241 -3.0788 -1.4424 10 6 1.4298 -4.5333 -1.4419 11 8 1.2717 -5.1184 -0.3913 12 7 1.2518 -5.1837 -2.6088 13 6 0.8679 -6.5975 -2.6083 14 1 0.2049 -6.7937 -1.7657 15 6 0.1444 -6.9300 -3.9148 16 6 -0.2570 -8.4064 -3.9140 17 6 0.9959 -9.2755 -3.7895 18 1 1.6592 -9.0798 -4.6320 19 7 0.6115 -10.6892 -3.7881 20 6 1.5066 -11.6425 -4.1944 21 1 2.4961 -11.3523 -4.5154 22 6 1.1422 -12.9819 -4.1936 23 7 2.0027 -13.8984 -4.5836 24 14 -0.5667 -13.4846 -3.6310 25 1 -0.5515 -13.7383 -2.1679 26 1 -1.5283 -12.3945 -3.9344 27 1 -0.9787 -14.7206 -4.3433 28 6 1.7194 -8.9430 -2.4830 29 6 2.1213 -7.4661 -2.4840 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 5.2201 -1.5551 -1.0145 34 1 5.6636 -0.7853 0.5278 35 1 4.7626 -2.3204 0.5261 36 1 1.0053 -2.7038 0.5145 37 1 2.7230 -3.1703 0.5132 38 1 2.7778 -2.9615 -1.9570 39 1 1.0600 -2.4950 -1.9556 40 1 1.3778 -4.7156 -3.4490 41 1 0.8075 -6.7338 -4.7575 42 1 -0.7484 -6.3110 -4.0033 43 1 -0.7728 -8.6431 -4.8446 44 1 -0.9202 -8.6021 -3.0715 45 1 -0.2771 -10.9499 -3.4995 46 1 1.7494 -14.8347 -4.5792 47 1 1.0562 -9.1388 -1.6404 48 1 2.6124 -9.5619 -2.3944 49 1 2.7842 -7.2700 -3.3267 50 1 2.6366 -7.2293 -1.5533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482025944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:03 Heat of formation + Delta-G solvation = -18.181646 kcal Electronic energy + Delta-G solvation = -28448.077077 eV Core-core repulsion = 24476.668022 eV Total energy + Delta-G solvation = -3971.409055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -45.90872 -41.04750 -39.37295 -36.92344 -36.36422 -34.72758 -34.60379 -33.08162 -32.44575 -31.67162 -29.64618 -29.42172 -28.45386 -26.19866 -24.97566 -23.65955 -22.66106 -22.07368 -21.34155 -21.04642 -20.85460 -19.54180 -18.69962 -18.14691 -17.64342 -17.23565 -16.75371 -16.59579 -16.16105 -15.38375 -15.37504 -15.04176 -14.89227 -14.75338 -14.58480 -14.34172 -14.30199 -13.99352 -13.85639 -13.69369 -13.59412 -13.43770 -13.30542 -13.19936 -13.08445 -12.91533 -12.89534 -12.44281 -12.26304 -12.22062 -12.03511 -11.92919 -11.78091 -11.72119 -11.45936 -11.20303 -10.93066 -10.85529 -10.71771 -10.04924 -9.95414 -9.28325 -8.00704 -5.33320 0.50100 1.19836 1.38186 1.41706 1.48830 1.73331 2.17239 2.31874 2.49748 3.24674 3.30541 3.53844 3.58145 3.74552 3.80888 3.87846 3.91971 4.05214 4.27792 4.31475 4.35034 4.36502 4.38860 4.43518 4.54449 4.61093 4.62829 4.64558 4.67030 4.70610 4.73926 4.84432 4.89482 4.92282 4.96918 5.07046 5.11056 5.14813 5.17400 5.18407 5.25795 5.29156 5.37015 5.51194 5.57947 5.64630 5.80206 6.24115 6.67446 7.10405 7.32022 7.37692 7.87980 8.06186 9.20879 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028918 B = 0.001813 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.033869 B =15441.505276 C =15893.610218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 N -0.402 5.402 4 O 0.079 5.921 5 C -0.024 4.024 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.018 4.018 9 C -0.125 4.125 10 C 0.511 3.489 11 O -0.585 6.585 12 N -0.713 5.713 13 C 0.152 3.848 14 H 0.067 0.933 15 C -0.107 4.107 16 C -0.117 4.117 17 C 0.174 3.826 18 H 0.046 0.954 19 N -0.754 5.754 20 C -0.225 4.225 21 H 0.056 0.944 22 C -0.068 4.068 23 N -0.986 5.986 24 Si 0.954 3.046 25 H -0.283 1.283 26 H -0.249 1.249 27 H -0.297 1.297 28 C -0.125 4.125 29 C -0.112 4.112 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.417 0.583 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.364 0.636 46 H 0.256 0.744 47 H 0.047 0.953 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 32.149 6.160 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 N -0.112 5.112 4 O 0.018 5.982 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.057 4.057 9 C -0.165 4.165 10 C 0.299 3.701 11 O -0.465 6.465 12 N -0.364 5.364 13 C 0.047 3.953 14 H 0.086 0.914 15 C -0.145 4.145 16 C -0.156 4.156 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.396 5.396 20 C -0.356 4.356 21 H 0.074 0.926 22 C -0.260 4.260 23 N -0.636 5.636 24 Si 0.782 3.218 25 H -0.210 1.210 26 H -0.173 1.173 27 H -0.224 1.224 28 C -0.166 4.166 29 C -0.152 4.152 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.254 0.746 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.197 0.803 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.390 32.989 6.794 33.711 hybrid contribution -0.567 -1.669 0.128 1.768 sum -1.958 31.320 6.922 32.136 Atomic orbital electron populations 1.20305 0.84469 1.04659 1.04165 1.23967 1.00097 0.88487 1.01600 1.73843 0.89896 1.25176 1.22243 1.84766 1.21405 1.23678 1.68380 1.24921 0.99566 0.83138 1.01098 1.20580 0.88665 0.98619 1.05600 1.21026 0.91630 0.97441 1.11060 1.19503 1.03079 0.86860 0.96231 1.21624 1.05580 0.90462 0.98789 1.21165 0.75753 0.89951 0.83234 1.90727 1.52584 1.70294 1.32882 1.45988 1.70077 1.11124 1.09257 1.20823 0.95277 0.80146 0.99088 0.91443 1.21652 1.01330 0.95198 0.96333 1.21698 0.96874 0.94575 1.02461 1.20485 0.95492 0.82155 0.95191 0.93581 1.42851 1.13665 1.03040 1.80093 1.19033 0.94976 0.87413 1.34178 0.92583 1.25510 1.01960 0.95791 1.02692 1.69887 1.36949 1.00592 1.56217 0.85414 0.80946 0.77745 0.77718 1.20965 1.17305 1.22372 1.22023 0.99842 0.95404 0.99331 1.21765 0.97994 0.93806 1.01596 0.89554 0.90225 0.88441 0.87512 0.88698 0.88153 0.90543 0.90136 0.86581 0.86797 0.74620 0.89715 0.89060 0.90964 0.91991 0.80294 0.93494 0.93370 0.94593 0.90991 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.39 71.24 0.74 -0.12 16 2 C 0.02 0.29 7.33 43.58 0.32 0.61 16 3 N -0.40 -8.38 12.07 -49.56 -0.60 -8.98 16 4 O 0.08 1.47 11.20 71.58 0.80 2.28 16 5 C -0.02 -0.32 7.49 25.04 0.19 -0.13 16 6 C -0.08 -0.46 10.30 71.24 0.73 0.27 16 7 C -0.21 -2.93 5.58 -19.74 -0.11 -3.04 16 8 C -0.02 -0.24 4.83 29.85 0.14 -0.09 16 9 C -0.12 -1.20 5.68 29.85 0.17 -1.03 16 10 C 0.51 8.81 7.79 87.66 0.68 9.50 16 11 O -0.58 -15.87 15.64 -3.05 -0.05 -15.91 16 12 N -0.71 -10.33 5.08 -442.53 -2.25 -12.57 16 13 C 0.15 3.15 2.45 44.99 0.11 3.26 16 14 H 0.07 1.73 7.58 -2.38 -0.02 1.71 16 15 C -0.11 -1.92 5.39 30.59 0.16 -1.75 16 16 C -0.12 -3.06 5.39 30.59 0.16 -2.90 16 17 C 0.17 6.21 2.77 44.99 0.12 6.33 16 18 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 19 N -0.75 -34.56 4.92 -322.96 -1.59 -36.15 16 20 C -0.22 -12.75 10.41 84.03 0.87 -11.88 16 21 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.99 -63.50 13.97 21.65 0.30 -63.20 16 24 Si 0.95 45.69 27.73 68.60 1.90 47.59 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 C -0.13 -4.28 5.50 30.61 0.17 -4.11 16 29 C -0.11 -2.91 5.50 30.61 0.17 -2.74 16 30 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.10 0.51 7.44 -2.38 -0.02 0.49 16 36 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.08 1.13 7.40 -2.39 -0.02 1.11 16 38 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.42 3.13 8.60 -92.71 -0.80 2.33 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.36 16.07 5.66 -92.71 -0.52 15.54 16 46 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 47 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.02 405.01 3.20 -75.82 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.44 Total: 22.55 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.11 Total: -11.41 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -4.13 Total: -120.91 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.75 Total: -13.64 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -79.02 3.20 -75.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482025944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.637 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds