Wall clock time and date at job start Tue Mar 31 2020 19:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47519 * 2 1 4 4 C 1.42894 * 114.00209 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.30803 * 27.82382 * 4 3 2 6 6 C 1.54387 * 110.43252 * 265.59018 * 4 3 2 7 7 N 1.48147 * 104.61584 * 264.95002 * 6 4 3 8 8 C 1.34779 * 127.83665 * 140.43645 * 7 6 4 9 9 O 1.21630 * 120.00347 * 353.56851 * 8 7 6 10 10 C 1.47269 * 120.00067 * 173.57700 * 8 7 6 11 11 C 1.46683 * 126.94166 * 352.36880 * 10 8 7 12 12 C 1.34481 * 106.33285 * 179.89155 * 11 10 8 13 13 N 1.36442 * 108.85718 * 0.38025 * 12 11 10 14 14 H 0.97001 * 124.85573 * 179.76474 * 13 12 11 15 15 C 1.34660 * 110.29788 * 359.74845 * 13 12 11 16 16 C 1.50701 * 125.80312 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46868 * 265.02491 * 16 15 13 18 18 C 1.48145 * 104.32818 * 320.41459 * 7 6 4 19 19 C 1.54289 * 110.34304 * 150.00223 * 4 3 2 20 20 H 1.08997 * 110.33818 * 359.97438 * 19 4 3 21 21 C 1.53004 * 110.33881 * 237.84879 * 19 4 3 22 22 N 1.46498 * 109.46699 * 175.00057 * 21 19 4 23 23 C 1.36943 * 119.99909 * 180.27294 * 22 21 19 24 24 H 1.08004 * 119.99500 * 359.72198 * 23 22 21 25 25 C 1.38809 * 119.99978 * 179.72032 * 23 22 21 26 26 N 1.31610 * 120.00309 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99676 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47027 * 60.00418 * 27 25 23 29 29 H 1.48496 * 109.46819 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.46956 * 300.00044 * 27 25 23 31 31 H 1.09003 * 109.47739 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47386 * 300.00410 * 1 2 3 33 33 H 1.09000 * 109.46953 * 60.00165 * 1 2 3 34 34 H 1.09000 * 109.47386 * 239.99590 * 2 1 3 35 35 H 1.09000 * 109.46953 * 119.99835 * 2 1 3 36 36 H 1.08998 * 110.40645 * 23.73227 * 6 4 3 37 37 H 1.09001 * 110.41250 * 146.16915 * 6 4 3 38 38 H 1.08006 * 126.83345 * 0.02562 * 11 10 8 39 39 H 1.08002 * 125.57448 * 180.09306 * 12 11 10 40 40 H 1.09004 * 109.46803 * 25.02109 * 16 15 13 41 41 H 1.08997 * 109.47199 * 145.02349 * 16 15 13 42 42 H 1.08997 * 109.47326 * 59.99936 * 17 16 15 43 43 H 1.09006 * 109.47130 * 179.97438 * 17 16 15 44 44 H 1.08994 * 109.47030 * 299.99514 * 17 16 15 45 45 H 1.09004 * 110.40391 * 280.80361 * 18 7 6 46 46 H 1.08989 * 110.40876 * 158.37085 * 18 7 6 47 47 H 1.08999 * 109.47608 * 54.99894 * 21 19 4 48 48 H 1.09004 * 109.46835 * 294.99463 * 21 19 4 49 49 H 0.96994 * 120.00392 * 359.97438 * 22 21 19 50 50 H 0.97004 * 120.00343 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8795 0.5886 -0.4762 6 6 3.9587 1.6137 1.4432 7 7 4.0924 3.0761 1.6386 8 6 3.8006 3.7929 2.7421 9 8 3.2630 3.2557 3.6917 10 6 4.1324 5.2266 2.7980 11 6 4.9124 5.9898 1.8178 12 6 4.9592 7.2541 2.2736 13 7 4.2795 7.3226 3.4547 14 1 4.1708 8.1269 3.9859 15 6 3.7807 6.1141 3.7773 16 6 2.9729 5.7939 5.0086 17 6 3.8998 5.2577 6.1014 18 6 4.6201 3.5719 0.3462 19 6 3.8670 2.7512 -0.7227 20 1 2.9946 3.2991 -1.0788 21 6 4.7973 2.4181 -1.8908 22 7 5.1038 3.6420 -2.6353 23 6 5.9197 3.5891 -3.7338 24 1 6.3408 2.6457 -4.0486 25 6 6.2053 4.7478 -4.4427 26 7 5.6925 5.8975 -4.0588 27 14 7.3190 4.6756 -5.9408 28 1 6.7237 3.7711 -6.9569 29 1 7.4654 6.0373 -6.5147 30 1 8.6534 4.1613 -5.5412 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 3.2453 1.1988 2.1552 37 1 4.9281 1.1262 1.5473 38 1 5.3583 5.6120 0.9095 39 1 5.4577 8.0794 1.7869 40 1 2.4777 6.6978 5.3634 41 1 2.2236 5.0405 4.7657 42 1 4.6491 6.0111 6.3443 43 1 3.3155 5.0265 6.9922 44 1 4.3949 4.3539 5.7466 45 1 5.6928 3.3902 0.2789 46 1 4.4057 4.6343 0.2306 47 1 4.3083 1.7031 -2.5524 48 1 5.7213 1.9852 -1.5073 49 1 4.7253 4.4892 -2.3527 50 1 5.8924 6.7073 -4.5539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489008413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:31 Heat of formation + Delta-G solvation = -19.234355 kcal Electronic energy + Delta-G solvation = -29899.550416 eV Core-core repulsion = 25928.095713 eV Total energy + Delta-G solvation = -3971.454704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.25814 -39.69269 -37.97545 -36.43908 -34.54383 -33.60794 -32.16099 -31.39497 -30.94134 -29.45259 -28.32469 -28.04524 -25.48725 -24.17490 -23.26215 -22.81222 -22.13769 -21.11002 -20.90686 -19.77426 -18.38657 -17.56851 -17.04180 -16.89641 -15.95039 -15.82411 -15.18648 -15.11956 -14.67425 -14.44724 -14.38650 -14.22219 -13.90802 -13.59981 -13.37825 -13.30531 -13.12896 -12.87568 -12.64135 -12.40774 -12.27557 -12.16669 -12.08990 -11.70382 -11.56362 -11.43540 -11.28554 -11.10874 -10.97323 -10.90043 -10.75300 -10.67740 -10.26018 -10.08665 -9.76847 -9.56155 -9.45525 -8.88097 -8.75411 -8.40570 -8.05913 -6.93494 -5.76652 -3.05599 1.86154 2.55257 3.06015 3.41147 3.44238 3.48749 3.49388 3.70350 3.78088 4.58001 4.66637 4.70747 4.82413 4.93981 5.04810 5.11354 5.17685 5.25526 5.28348 5.35228 5.36605 5.43154 5.47973 5.53899 5.54450 5.58355 5.68353 5.76440 5.79960 5.86407 5.89961 5.91561 5.98544 5.99861 6.08687 6.11032 6.21208 6.24938 6.31536 6.33449 6.55144 6.69829 6.80521 6.84922 7.02586 7.40642 7.46664 7.69385 7.89265 8.41633 8.55053 9.53339 10.09576 10.44895 11.45843 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.003887 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.917202 B = 7202.095622 C =10023.654646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.081 3.919 5 H 0.080 0.920 6 C 0.088 3.912 7 N -0.613 5.613 8 C 0.614 3.386 9 O -0.559 6.559 10 C -0.227 4.227 11 C -0.169 4.169 12 C -0.018 4.018 13 N -0.553 5.553 14 H 0.413 0.587 15 C 0.102 3.898 16 C -0.058 4.058 17 C -0.139 4.139 18 C 0.102 3.898 19 C -0.106 4.106 20 H 0.094 0.906 21 C 0.164 3.836 22 N -0.730 5.730 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.051 17.151 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.098 0.902 6 C -0.035 4.035 7 N -0.345 5.345 8 C 0.407 3.593 9 O -0.439 6.439 10 C -0.237 4.237 11 C -0.193 4.193 12 C -0.145 4.145 13 N -0.148 5.148 14 H 0.249 0.751 15 C -0.016 4.016 16 C -0.096 4.096 17 C -0.197 4.197 18 C -0.020 4.020 19 C -0.126 4.126 20 H 0.113 0.887 21 C 0.036 3.964 22 N -0.375 5.375 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.178 0.822 39 H 0.188 0.812 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.117 0.883 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.842 -3.039 17.652 18.840 hybrid contribution 0.740 0.520 -0.850 1.241 sum -5.102 -2.519 16.802 17.740 Atomic orbital electron populations 1.21725 0.94014 1.01881 1.03149 1.22498 0.95520 0.84336 0.99828 1.88015 1.20504 1.25851 1.94743 1.23064 0.81433 0.98905 0.94377 0.90212 1.22764 1.01111 0.82273 0.97377 1.48599 1.64902 1.07786 1.13255 1.16903 0.77013 0.84831 0.80596 1.90702 1.44500 1.72273 1.36450 1.20017 1.11327 0.93187 0.99202 1.22654 1.03372 0.92701 1.00539 1.21833 1.03772 0.99726 0.89136 1.41582 1.43351 1.09716 1.20182 0.75099 1.20239 0.99503 0.84669 0.97207 1.20217 0.97357 1.01615 0.90415 1.21647 0.99081 1.01635 0.97337 1.22898 0.98123 1.00456 0.80541 1.22455 0.99810 0.94806 0.95514 0.88723 1.20698 0.94429 0.90980 0.90282 1.42314 1.58363 1.04623 1.32159 1.19160 1.21000 0.93863 1.03168 0.91253 1.24711 1.00953 0.95497 0.99561 1.69640 1.48456 0.98079 1.41810 0.86288 0.80558 0.76482 0.82965 1.21325 1.21722 1.21288 0.91403 0.91989 0.91807 0.93294 0.93659 0.89668 0.90623 0.82213 0.81202 0.91772 0.88259 0.93530 0.92298 0.91436 0.90340 0.88331 0.95955 0.95921 0.78154 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.15 0.38 -1.18 16 2 C 0.05 0.64 6.50 37.15 0.24 0.88 16 3 O -0.37 -5.67 9.95 -35.23 -0.35 -6.02 16 4 C 0.08 1.17 3.19 -25.33 -0.08 1.09 16 5 H 0.08 1.01 7.38 -51.93 -0.38 0.63 16 6 C 0.09 1.26 6.82 -2.41 -0.02 1.24 16 7 N -0.61 -9.84 3.32 -170.63 -0.57 -10.40 16 8 C 0.61 10.54 7.89 -12.59 -0.10 10.44 16 9 O -0.56 -10.41 14.73 5.25 0.08 -10.33 16 10 C -0.23 -3.51 6.20 -103.35 -0.64 -4.15 16 11 C -0.17 -2.45 9.32 -37.50 -0.35 -2.80 16 12 C -0.02 -0.21 11.89 -16.83 -0.20 -0.41 16 13 N -0.55 -5.73 5.90 -9.11 -0.05 -5.78 16 14 H 0.41 2.78 8.96 -40.82 -0.37 2.42 16 15 C 0.10 1.31 6.43 -81.88 -0.53 0.79 16 16 C -0.06 -0.64 5.73 -27.88 -0.16 -0.80 16 17 C -0.14 -1.45 9.85 37.16 0.37 -1.08 16 18 C 0.10 1.63 5.09 -2.41 -0.01 1.62 16 19 C -0.11 -1.77 2.90 -89.22 -0.26 -2.02 16 20 H 0.09 1.76 7.98 -51.93 -0.41 1.34 16 21 C 0.16 3.15 5.38 -4.04 -0.02 3.13 16 22 N -0.73 -17.69 5.48 -59.90 -0.33 -18.02 16 23 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 25 C -0.01 -0.31 5.50 -17.44 -0.10 -0.41 16 26 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 27 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.26 7.78 -51.93 -0.40 0.86 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.16 2.40 5.35 -52.48 -0.28 2.12 16 39 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 1.30 6.93 -51.93 -0.36 0.94 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.87 7.60 -51.93 -0.39 0.47 16 45 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 46 H 0.10 1.64 4.87 -51.94 -0.25 1.38 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 49 H 0.38 9.77 7.61 -40.82 -0.31 9.46 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -33.27 402.04 -9.26 -42.53 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.18 Total: 11.96 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.62 Total: -0.36 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.22 Total: -60.76 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.27 -9.26 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489008413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.294 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds