Wall clock time and date at job start Tue Mar 31 2020 19:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47519 * 2 1 4 4 C 1.42894 * 114.00209 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.30803 * 27.82382 * 4 3 2 6 6 C 1.54387 * 110.43252 * 265.59018 * 4 3 2 7 7 N 1.48147 * 104.61584 * 264.95002 * 6 4 3 8 8 C 1.34779 * 127.83665 * 140.43645 * 7 6 4 9 9 O 1.21630 * 120.00347 * 353.56851 * 8 7 6 10 10 C 1.47269 * 120.00067 * 173.57700 * 8 7 6 11 11 C 1.46683 * 126.94166 * 352.36880 * 10 8 7 12 12 C 1.34481 * 106.33285 * 179.89155 * 11 10 8 13 13 N 1.36442 * 108.85718 * 0.38025 * 12 11 10 14 14 H 0.97001 * 124.85573 * 179.76474 * 13 12 11 15 15 C 1.34660 * 110.29788 * 359.74845 * 13 12 11 16 16 C 1.50701 * 125.80312 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46868 * 265.02491 * 16 15 13 18 18 C 1.48145 * 104.32818 * 320.41459 * 7 6 4 19 19 C 1.54289 * 110.34304 * 150.00223 * 4 3 2 20 20 H 1.08997 * 110.33818 * 359.97438 * 19 4 3 21 21 C 1.53004 * 110.33881 * 237.84879 * 19 4 3 22 22 N 1.46498 * 109.46699 * 175.00057 * 21 19 4 23 23 C 1.36943 * 119.99909 * 180.27294 * 22 21 19 24 24 H 1.08004 * 119.99500 * 359.72198 * 23 22 21 25 25 C 1.38809 * 119.99978 * 179.72032 * 23 22 21 26 26 N 1.31610 * 120.00309 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99676 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47027 * 60.00418 * 27 25 23 29 29 H 1.48496 * 109.46819 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.46956 * 300.00044 * 27 25 23 31 31 H 1.09003 * 109.47739 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47386 * 300.00410 * 1 2 3 33 33 H 1.09000 * 109.46953 * 60.00165 * 1 2 3 34 34 H 1.09000 * 109.47386 * 239.99590 * 2 1 3 35 35 H 1.09000 * 109.46953 * 119.99835 * 2 1 3 36 36 H 1.08998 * 110.40645 * 23.73227 * 6 4 3 37 37 H 1.09001 * 110.41250 * 146.16915 * 6 4 3 38 38 H 1.08006 * 126.83345 * 0.02562 * 11 10 8 39 39 H 1.08002 * 125.57448 * 180.09306 * 12 11 10 40 40 H 1.09004 * 109.46803 * 25.02109 * 16 15 13 41 41 H 1.08997 * 109.47199 * 145.02349 * 16 15 13 42 42 H 1.08997 * 109.47326 * 59.99936 * 17 16 15 43 43 H 1.09006 * 109.47130 * 179.97438 * 17 16 15 44 44 H 1.08994 * 109.47030 * 299.99514 * 17 16 15 45 45 H 1.09004 * 110.40391 * 280.80361 * 18 7 6 46 46 H 1.08989 * 110.40876 * 158.37085 * 18 7 6 47 47 H 1.08999 * 109.47608 * 54.99894 * 21 19 4 48 48 H 1.09004 * 109.46835 * 294.99463 * 21 19 4 49 49 H 0.96994 * 120.00392 * 359.97438 * 22 21 19 50 50 H 0.97004 * 120.00343 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8795 0.5886 -0.4762 6 6 3.9587 1.6137 1.4432 7 7 4.0924 3.0761 1.6386 8 6 3.8006 3.7929 2.7421 9 8 3.2630 3.2557 3.6917 10 6 4.1324 5.2266 2.7980 11 6 4.9124 5.9898 1.8178 12 6 4.9592 7.2541 2.2736 13 7 4.2795 7.3226 3.4547 14 1 4.1708 8.1269 3.9859 15 6 3.7807 6.1141 3.7773 16 6 2.9729 5.7939 5.0086 17 6 3.8998 5.2577 6.1014 18 6 4.6201 3.5719 0.3462 19 6 3.8670 2.7512 -0.7227 20 1 2.9946 3.2991 -1.0788 21 6 4.7973 2.4181 -1.8908 22 7 5.1038 3.6420 -2.6353 23 6 5.9197 3.5891 -3.7338 24 1 6.3408 2.6457 -4.0486 25 6 6.2053 4.7478 -4.4427 26 7 5.6925 5.8975 -4.0588 27 14 7.3190 4.6756 -5.9408 28 1 6.7237 3.7711 -6.9569 29 1 7.4654 6.0373 -6.5147 30 1 8.6534 4.1613 -5.5412 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 3.2453 1.1988 2.1552 37 1 4.9281 1.1262 1.5473 38 1 5.3583 5.6120 0.9095 39 1 5.4577 8.0794 1.7869 40 1 2.4777 6.6978 5.3634 41 1 2.2236 5.0405 4.7657 42 1 4.6491 6.0111 6.3443 43 1 3.3155 5.0265 6.9922 44 1 4.3949 4.3539 5.7466 45 1 5.6928 3.3902 0.2789 46 1 4.4057 4.6343 0.2306 47 1 4.3083 1.7031 -2.5524 48 1 5.7213 1.9852 -1.5073 49 1 4.7253 4.4892 -2.3527 50 1 5.8924 6.7073 -4.5539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489008413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:29 Heat of formation + Delta-G solvation = -40.931956 kcal Electronic energy + Delta-G solvation = -29900.491295 eV Core-core repulsion = 25928.095713 eV Total energy + Delta-G solvation = -3972.395582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.28042 -40.91353 -39.20890 -37.71349 -36.27440 -34.54085 -33.75100 -32.69793 -31.93479 -31.00329 -29.46330 -29.12810 -27.06619 -25.63416 -24.35285 -23.96391 -23.41864 -22.29619 -21.99478 -21.10522 -19.57112 -19.03922 -18.49939 -18.07668 -17.19034 -16.96250 -16.55127 -16.32809 -16.19955 -15.64497 -15.52266 -15.35404 -15.08590 -15.00016 -14.82978 -14.56587 -14.40317 -14.18195 -13.79713 -13.50459 -13.35206 -13.21719 -13.11408 -13.02452 -12.84247 -12.79286 -12.64685 -12.32868 -12.31143 -12.22300 -12.09613 -11.96310 -11.85021 -11.71591 -11.51041 -10.93289 -10.82584 -10.60777 -9.84866 -9.60291 -9.10087 -8.94174 -7.88419 -5.17129 0.74852 1.52187 1.52271 1.54356 1.60164 1.96808 2.39788 2.52474 2.57209 2.71068 3.43873 3.45628 3.54777 3.78702 3.98247 4.01057 4.07999 4.13715 4.20508 4.25467 4.29855 4.37328 4.43054 4.44830 4.51295 4.52377 4.54356 4.59378 4.68012 4.69508 4.82378 4.85634 4.92765 4.94390 4.98596 5.04265 5.05185 5.13100 5.23678 5.26290 5.30772 5.34528 5.40419 5.56198 5.78242 5.99995 6.32167 6.34062 6.60082 6.68198 7.27305 7.40139 8.13668 8.38263 9.34483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.003887 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.917202 B = 7202.095622 C =10023.654646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.399 6.399 4 C 0.090 3.910 5 H 0.103 0.897 6 C 0.088 3.912 7 N -0.616 5.616 8 C 0.604 3.396 9 O -0.583 6.583 10 C -0.265 4.265 11 C -0.200 4.200 12 C -0.002 4.002 13 N -0.533 5.533 14 H 0.434 0.566 15 C 0.108 3.892 16 C -0.056 4.056 17 C -0.133 4.133 18 C 0.113 3.887 19 C -0.097 4.097 20 H 0.071 0.929 21 C 0.168 3.832 22 N -0.741 5.741 23 C -0.245 4.245 24 H 0.077 0.923 25 C -0.070 4.070 26 N -0.965 5.965 27 Si 0.969 3.031 28 H -0.281 1.281 29 H -0.297 1.297 30 H -0.278 1.278 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.146 0.854 39 H 0.200 0.800 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.024 0.976 48 H 0.037 0.963 49 H 0.375 0.625 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 -3.226 17.880 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.319 6.319 4 C 0.031 3.969 5 H 0.121 0.879 6 C -0.035 4.035 7 N -0.349 5.349 8 C 0.398 3.602 9 O -0.465 6.465 10 C -0.275 4.275 11 C -0.223 4.223 12 C -0.130 4.130 13 N -0.130 5.130 14 H 0.274 0.726 15 C -0.012 4.012 16 C -0.094 4.094 17 C -0.191 4.191 18 C -0.010 4.010 19 C -0.117 4.117 20 H 0.089 0.911 21 C 0.042 3.958 22 N -0.384 5.384 23 C -0.377 4.377 24 H 0.095 0.905 25 C -0.263 4.263 26 N -0.615 5.615 27 Si 0.799 3.201 28 H -0.207 1.207 29 H -0.223 1.223 30 H -0.204 1.204 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.164 0.836 39 H 0.216 0.784 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.042 0.958 48 H 0.054 0.946 49 H 0.207 0.793 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.425 -3.245 18.394 19.450 hybrid contribution 0.559 0.540 -1.029 1.290 sum -4.866 -2.705 17.365 18.236 Atomic orbital electron populations 1.21750 0.93212 1.03374 1.02220 1.22759 0.96264 0.82884 1.01047 1.87986 1.20729 1.28278 1.94870 1.22990 0.81605 0.98251 0.94092 0.87932 1.22906 1.02082 0.81454 0.97060 1.48670 1.64641 1.08589 1.12951 1.17291 0.76732 0.85722 0.80467 1.90669 1.45768 1.72935 1.37158 1.20136 1.13386 0.92941 1.01016 1.22621 1.04909 0.94103 1.00715 1.22199 1.02485 0.99385 0.88953 1.41539 1.41934 1.09793 1.19736 0.72591 1.20482 0.98768 0.84971 0.97007 1.20247 0.96836 1.02476 0.89863 1.21591 0.99347 1.00650 0.97521 1.22716 0.97830 0.99876 0.80530 1.22250 0.98396 0.96077 0.94958 0.91089 1.20781 0.95369 0.89114 0.90573 1.42491 1.57992 1.05838 1.32114 1.19568 1.20516 0.94038 1.03538 0.90545 1.25480 1.02916 0.95350 1.02524 1.69796 1.50164 0.98490 1.43069 0.85281 0.79075 0.76044 0.79748 1.20736 1.22341 1.20361 0.88695 0.92896 0.92732 0.92127 0.92255 0.90268 0.88473 0.83639 0.78354 0.88342 0.90662 0.91928 0.90650 0.94515 0.90386 0.89305 0.95762 0.94554 0.79273 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.05 1.03 6.50 71.98 0.47 1.50 16 3 O -0.40 -12.08 9.95 -148.98 -1.48 -13.56 16 4 C 0.09 2.53 3.19 31.50 0.10 2.63 16 5 H 0.10 2.41 7.38 -2.39 -0.02 2.39 16 6 C 0.09 2.47 6.82 86.53 0.59 3.06 16 7 N -0.62 -20.32 3.32 -812.01 -2.69 -23.01 16 8 C 0.60 21.49 7.89 86.62 0.68 22.17 16 9 O -0.58 -22.50 14.73 -4.13 -0.06 -22.56 16 10 C -0.26 -8.37 6.20 -19.04 -0.12 -8.49 16 11 C -0.20 -5.91 9.32 23.62 0.22 -5.69 16 12 C 0.00 -0.05 11.89 83.12 0.99 0.93 16 13 N -0.53 -9.96 5.90 -182.73 -1.08 -11.04 16 14 H 0.43 4.46 8.96 -92.71 -0.83 3.63 16 15 C 0.11 2.69 6.43 41.78 0.27 2.96 16 16 C -0.06 -1.18 5.73 29.85 0.17 -1.01 16 17 C -0.13 -2.63 9.85 71.98 0.71 -1.92 16 18 C 0.11 3.73 5.09 86.53 0.44 4.17 16 19 C -0.10 -3.27 2.90 -9.89 -0.03 -3.30 16 20 H 0.07 2.75 7.98 -2.39 -0.02 2.73 16 21 C 0.17 6.41 5.38 86.38 0.46 6.87 16 22 N -0.74 -36.28 5.48 -343.44 -1.88 -38.16 16 23 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 24 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 26 N -0.96 -57.37 13.06 21.65 0.28 -57.09 16 27 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 29 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 30 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 2.34 7.78 -2.39 -0.02 2.32 16 37 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.15 4.63 5.35 -2.91 -0.02 4.61 16 39 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 1.99 6.93 -2.39 -0.02 1.97 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.04 0.95 7.60 -2.39 -0.02 0.93 16 45 H 0.08 2.57 7.75 -2.39 -0.02 2.55 16 46 H 0.09 3.14 4.87 -2.39 -0.01 3.12 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.04 1.32 7.98 -2.38 -0.02 1.30 16 49 H 0.38 19.62 7.61 -92.71 -0.71 18.92 16 50 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.02 402.04 1.54 -71.49 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.58 Total: 40.99 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 7.00 Total: 5.84 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.37 Total: -129.29 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.54 Total: -36.12 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.02 1.54 -71.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489008413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.554 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds