Wall clock time and date at job start Tue Mar 31 2020 19:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46877 * 2 1 4 4 C 1.35311 * 126.66451 * 89.71850 * 3 2 1 5 5 C 1.42271 * 103.92563 * 179.87270 * 4 3 2 6 6 C 1.48331 * 126.94112 * 180.10854 * 5 4 3 7 7 O 1.21493 * 120.00037 * 0.31025 * 6 5 4 8 8 N 1.34775 * 119.99967 * 180.29950 * 6 5 4 9 9 C 1.46496 * 120.00111 * 174.67154 * 8 6 5 10 10 C 1.53007 * 109.47194 * 303.93870 * 9 8 6 11 11 N 1.46498 * 109.46922 * 305.52251 * 10 9 8 12 12 C 1.36940 * 119.99865 * 175.03811 * 11 10 9 13 13 H 1.07997 * 119.99764 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00141 * 179.97438 * 12 11 10 15 15 N 1.31621 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00142 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47560 * 59.99477 * 16 14 12 18 18 H 1.48498 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46811 * 299.99626 * 16 14 12 20 20 C 1.52999 * 109.47454 * 183.93960 * 9 8 6 21 21 C 1.53002 * 109.47165 * 300.00099 * 20 9 8 22 22 C 1.52995 * 109.46959 * 300.00000 * 21 20 9 23 23 C 1.53007 * 109.47383 * 59.99611 * 22 21 20 24 24 C 1.52994 * 109.47195 * 300.00113 * 23 22 21 25 25 H 1.09000 * 109.47165 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47164 * 299.99788 * 24 23 22 27 27 N 1.30988 * 106.11888 * 0.39078 * 5 4 3 28 28 O 1.20903 * 111.43777 * 359.74403 * 27 5 4 29 29 H 1.09005 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47078 * 299.99681 * 1 2 3 31 31 H 1.08998 * 109.47079 * 60.00067 * 1 2 3 32 32 H 1.09006 * 109.46873 * 240.00657 * 2 1 3 33 33 H 1.08994 * 109.47420 * 120.00793 * 2 1 3 34 34 H 1.08010 * 128.03906 * 359.97438 * 4 3 2 35 35 H 0.97001 * 120.00150 * 354.68071 * 8 6 5 36 36 H 1.09002 * 109.46759 * 65.52159 * 10 9 8 37 37 H 1.09001 * 109.46941 * 185.51880 * 10 9 8 38 38 H 0.97001 * 120.00390 * 355.03521 * 11 10 9 39 39 H 0.97000 * 119.99768 * 180.02562 * 15 14 12 40 40 H 1.09007 * 109.47232 * 60.00058 * 20 9 8 41 41 H 1.08999 * 109.47290 * 179.97438 * 20 9 8 42 42 H 1.08999 * 109.46760 * 59.99456 * 21 20 9 43 43 H 1.09000 * 109.47361 * 180.02562 * 21 20 9 44 44 H 1.09007 * 109.47259 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47640 * 299.99956 * 22 21 20 46 46 H 1.09007 * 109.46684 * 59.99975 * 23 22 21 47 47 H 1.08994 * 109.46860 * 179.97438 * 23 22 21 48 48 H 1.09001 * 109.47013 * 180.02562 * 26 24 23 49 49 H 1.08994 * 109.47116 * 299.99947 * 26 24 23 50 50 H 1.09001 * 109.46816 * 60.00126 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2965 2.1844 1.0854 5 6 2.7393 3.4196 0.5355 6 6 3.1659 4.6268 1.2843 7 8 3.1639 4.6203 2.4992 8 7 3.5560 5.7308 0.6170 9 6 3.8654 6.9599 1.3517 10 6 2.6602 7.3612 2.2047 11 7 1.4716 7.4610 1.3543 12 6 0.2472 7.7089 1.9152 13 1 0.1578 7.8305 2.9846 14 6 -0.8790 7.8041 1.1093 15 7 -0.7700 7.6564 -0.1940 16 14 -2.5491 8.1430 1.8744 17 1 -2.5105 9.4426 2.5918 18 1 -3.5805 8.1975 0.8075 19 1 -2.8839 7.0586 2.8323 20 6 4.1841 8.0805 0.3601 21 6 5.3892 7.6793 -0.4930 22 6 6.5987 7.4409 0.4132 23 6 6.2800 6.3203 1.4050 24 6 5.0749 6.7216 2.2580 25 1 4.8476 5.9230 2.9642 26 6 5.3980 8.0051 3.0254 27 7 2.6883 3.2775 -0.7657 28 8 2.2986 2.1755 -1.0749 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.1964 1.9176 2.1272 35 1 3.6319 5.7117 -0.3499 36 1 2.4936 6.6084 2.9752 37 1 2.8528 8.3256 2.6748 38 1 1.5518 7.3515 0.3938 39 1 -1.5569 7.7233 -0.7572 40 1 3.3224 8.2504 -0.2856 41 1 4.4138 8.9951 0.9068 42 1 5.1590 6.7648 -1.0396 43 1 5.6166 8.4778 -1.1992 44 1 7.4572 7.1546 -0.1944 45 1 6.8289 8.3553 0.9600 46 1 6.0498 5.4058 0.8582 47 1 7.1418 6.1503 2.0502 48 1 4.5396 8.2908 3.6334 49 1 6.2597 7.8354 3.6710 50 1 5.6250 8.8035 2.3188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495327510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:50 Heat of formation + Delta-G solvation = 21.565419 kcal Electronic energy + Delta-G solvation = -31047.536720 eV Core-core repulsion = 27077.851228 eV Total energy + Delta-G solvation = -3969.685493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.91688 -40.56215 -37.96515 -34.99788 -34.68627 -33.79851 -33.11573 -31.99548 -31.14027 -30.11777 -29.44073 -26.64823 -25.11347 -24.53873 -24.03323 -22.90509 -22.32234 -21.93809 -20.62728 -19.81142 -18.05699 -17.69638 -17.43799 -17.08821 -16.64840 -15.67188 -15.34695 -14.77146 -14.67219 -14.53451 -14.33737 -13.97926 -13.67570 -13.66329 -13.42319 -13.20998 -12.90379 -12.77980 -12.65755 -12.36043 -12.25410 -12.02270 -11.89456 -11.57738 -11.45138 -11.40717 -11.12281 -11.07350 -10.91382 -10.79375 -10.70962 -10.25289 -10.22946 -10.12996 -10.04637 -9.94747 -9.60307 -9.37294 -9.33584 -8.74700 -8.49672 -6.80176 -5.68860 -2.95461 1.33445 1.83614 3.00951 3.27706 3.48103 3.51884 3.53418 3.64319 4.18970 4.49685 4.64733 4.82339 4.88149 4.90291 4.93867 4.98124 5.11114 5.18767 5.29139 5.34099 5.40918 5.50873 5.53902 5.58176 5.64530 5.66011 5.70876 5.78325 5.79374 5.82724 5.85812 5.97406 6.02273 6.03913 6.11047 6.19954 6.22095 6.24110 6.33109 6.47376 6.54411 6.56063 6.63246 6.76192 6.92817 7.12386 7.77495 7.83617 8.19647 8.50197 8.54466 9.61279 10.19862 10.55299 11.54058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006788 B = 0.005807 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4123.939432 B = 4820.720022 C = 7873.785271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.038 4.038 3 C -0.040 4.040 4 C -0.180 4.180 5 C -0.014 4.014 6 C 0.609 3.391 7 O -0.518 6.518 8 N -0.692 5.692 9 C 0.182 3.818 10 C 0.139 3.861 11 N -0.726 5.726 12 C -0.230 4.230 13 H 0.068 0.932 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.904 3.096 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.288 1.288 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.110 4.110 24 C -0.099 4.099 25 H 0.090 0.910 26 C -0.148 4.148 27 N -0.330 5.330 28 O 0.119 5.881 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.401 0.599 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.382 0.618 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.349 -11.515 -0.850 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 C -0.103 4.103 4 C -0.202 4.202 5 C -0.174 4.174 6 C 0.392 3.608 7 O -0.393 6.393 8 N -0.343 5.343 9 C 0.096 3.904 10 C 0.011 3.989 11 N -0.370 5.370 12 C -0.362 4.362 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.584 5.584 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.214 1.214 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.119 4.119 25 H 0.108 0.892 26 C -0.205 4.205 27 N -0.031 5.031 28 O 0.044 5.956 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.195 0.805 35 H 0.236 0.764 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.216 0.784 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.502 -10.583 -0.844 17.175 hybrid contribution -1.247 -0.130 0.288 1.286 sum 12.255 -10.712 -0.556 16.286 Atomic orbital electron populations 1.21825 0.93382 1.02582 1.03388 1.20099 0.96756 0.86210 1.04586 1.24448 1.03029 0.97171 0.85682 1.22390 1.04751 0.91736 1.01332 1.23643 1.05720 0.98012 0.90015 1.16665 0.76924 0.80906 0.86280 1.90710 1.53583 1.82456 1.12502 1.45748 1.67411 1.10593 1.10542 1.20618 0.94868 0.82803 0.92063 1.21161 0.85865 0.98107 0.93755 1.42249 1.02344 1.86505 1.05895 1.19174 0.85083 1.39843 0.92073 0.91448 1.24683 0.97690 1.03282 0.95448 1.69648 1.28687 1.57478 1.02619 0.86298 0.84298 0.78059 0.77762 1.21342 1.21793 1.21442 1.21827 0.98375 0.97771 0.97988 1.21561 0.95179 1.01197 0.97849 1.21576 0.97391 0.99187 0.97514 1.21503 0.97464 0.98220 0.97547 1.21453 0.93698 0.99339 0.97411 0.89209 1.21958 1.01431 0.97197 0.99930 1.74153 1.14226 0.98933 1.15802 1.84752 1.60217 1.17232 1.33436 0.91332 0.91796 0.91848 0.89350 0.88500 0.80529 0.76397 0.93528 0.95755 0.78438 0.93693 0.90227 0.90057 0.92351 0.91865 0.92622 0.91647 0.92448 0.92415 0.91941 0.93060 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.04 -0.30 6.50 -27.88 -0.18 -0.48 16 3 C -0.04 -0.50 6.73 -35.35 -0.24 -0.74 16 4 C -0.18 -2.65 10.92 -39.08 -0.43 -3.07 16 5 C -0.01 -0.25 7.19 -82.53 -0.59 -0.85 16 6 C 0.61 11.74 7.26 -12.11 -0.09 11.65 16 7 O -0.52 -10.98 13.25 5.37 0.07 -10.91 16 8 N -0.69 -12.22 3.57 -48.39 -0.17 -12.39 16 9 C 0.18 3.11 0.09 -131.82 -0.01 3.10 16 10 C 0.14 3.01 4.27 -4.04 -0.02 3.00 16 11 N -0.73 -18.92 5.18 -59.90 -0.31 -19.24 16 12 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 15 N -0.94 -28.94 13.06 55.49 0.72 -28.21 16 16 Si 0.90 23.29 29.55 -169.99 -5.02 18.26 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 C -0.12 -1.88 4.40 -26.73 -0.12 -2.00 16 21 C -0.12 -1.50 5.75 -26.73 -0.15 -1.66 16 22 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 23 C -0.11 -1.39 5.29 -26.73 -0.14 -1.53 16 24 C -0.10 -1.48 2.10 -90.62 -0.19 -1.67 16 25 H 0.09 1.54 6.28 -51.93 -0.33 1.22 16 26 C -0.15 -1.95 8.15 37.16 0.30 -1.65 16 27 N -0.33 -5.62 11.85 33.29 0.39 -5.23 16 28 O 0.12 1.74 11.18 17.26 0.19 1.94 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.18 2.31 8.06 -52.48 -0.42 1.89 16 35 H 0.40 6.74 6.97 -40.82 -0.28 6.46 16 36 H 0.05 1.12 6.25 -51.93 -0.32 0.80 16 37 H 0.02 0.53 6.74 -51.93 -0.35 0.18 16 38 H 0.38 10.36 6.47 -40.82 -0.26 10.10 16 39 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 1.43 7.11 -51.92 -0.37 1.06 16 41 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 42 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 46 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -33.68 384.54 -7.91 -41.59 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -7.70 Total: 14.10 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.89 Total: -5.71 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 0.64 Total: -65.07 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.26 Total: -8.97 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -7.91 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495327510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds