Wall clock time and date at job start Tue Mar 31 2020 20:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47070 * 2 1 4 4 N 1.30016 * 127.33642 * 270.14229 * 3 2 1 5 5 O 1.20651 * 112.30112 * 180.30260 * 4 3 2 6 6 C 1.33497 * 113.15938 * 359.72259 * 5 4 3 7 7 C 1.50700 * 126.83202 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.33647 * 359.97438 * 6 5 4 9 9 C 1.47406 * 128.56139 * 179.97438 * 8 6 5 10 10 O 1.21606 * 119.99584 * 90.02285 * 9 8 6 11 11 N 1.34771 * 119.99819 * 270.02823 * 9 8 6 12 12 C 1.46506 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47020 * 34.99451 * 12 11 9 14 14 C 1.53005 * 109.46632 * 274.99522 * 12 11 9 15 15 C 1.52997 * 109.47452 * 299.99871 * 14 12 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 12 17 17 C 1.53000 * 109.47233 * 60.00194 * 16 15 14 18 18 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 19 19 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 20 20 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47005 * 64.99872 * 20 18 17 22 22 C 1.36940 * 120.00284 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99632 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00388 * 180.02562 * 22 21 20 25 25 N 1.31626 * 119.99842 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00232 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47003 * 89.99817 * 26 24 22 28 28 H 1.48503 * 109.47139 * 209.99849 * 26 24 22 29 29 H 1.48500 * 109.46962 * 329.99986 * 26 24 22 30 30 H 1.08996 * 109.47198 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46711 * 299.99704 * 1 2 3 33 33 H 1.09003 * 109.46984 * 239.99993 * 2 1 3 34 34 H 1.08996 * 109.47198 * 120.00453 * 2 1 3 35 35 H 1.09000 * 109.46611 * 269.97044 * 7 6 5 36 36 H 1.09006 * 109.47157 * 29.96602 * 7 6 5 37 37 H 1.08999 * 109.47404 * 149.97083 * 7 6 5 38 38 H 0.97008 * 120.00272 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46935 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.46812 * 60.00088 * 14 12 11 41 41 H 1.08993 * 109.47194 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.46695 * 59.99734 * 15 14 12 43 43 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 44 44 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 46 46 H 1.09001 * 109.47194 * 180.02562 * 17 16 15 47 47 H 1.08996 * 109.47729 * 184.99759 * 20 18 17 48 48 H 1.09001 * 109.47563 * 305.00337 * 20 18 17 49 49 H 0.96995 * 120.00463 * 0.02562 * 21 20 18 50 50 H 0.96996 * 119.99845 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2928 2.1651 -1.0337 5 8 2.6875 3.2614 -0.7208 6 6 2.7526 3.4385 0.6008 7 6 3.2001 4.6822 1.3246 8 6 2.3294 2.2620 1.1696 9 6 2.2094 1.9235 2.5992 10 8 1.1690 2.1406 3.1902 11 7 3.2529 1.3736 3.2513 12 6 3.1335 1.0367 4.6721 13 1 2.1181 0.7002 4.8816 14 6 3.4458 2.2732 5.5174 15 6 4.8710 2.7455 5.2232 16 6 5.8593 1.6294 5.5675 17 6 5.5471 0.3930 4.7222 18 6 4.1219 -0.0793 5.0163 19 1 4.0331 -0.3299 6.0734 20 6 3.8099 -1.3161 4.1715 21 7 4.6776 -2.4216 4.5851 22 6 4.5787 -3.6386 3.9652 23 1 3.8606 -3.7836 3.1716 24 6 5.4005 -4.6863 4.3574 25 7 6.2753 -4.5097 5.3249 26 14 5.2651 -6.3466 3.5122 27 1 6.1873 -6.3866 2.3489 28 1 5.6299 -7.4210 4.4703 29 1 3.8704 -6.5521 3.0455 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.2751 4.6344 1.4985 36 1 2.9687 5.5584 0.7188 37 1 2.6804 4.7535 2.2801 38 1 4.0827 1.2002 2.7798 39 1 3.3566 2.0227 6.5744 40 1 2.7416 3.0683 5.2720 41 1 5.0932 3.6266 5.8250 42 1 4.9597 2.9961 4.1661 43 1 5.7705 1.3788 6.6245 44 1 6.8747 1.9658 5.3575 45 1 5.6360 0.6436 3.6651 46 1 6.2510 -0.4023 4.9678 47 1 2.7672 -1.5999 4.3140 48 1 3.9847 -1.0911 3.1194 49 1 5.3223 -2.2916 5.2981 50 1 6.8494 -5.2419 5.5993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498504156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:59 Heat of formation + Delta-G solvation = 5.845578 kcal Electronic energy + Delta-G solvation = -30466.094892 eV Core-core repulsion = 26495.727736 eV Total energy + Delta-G solvation = -3970.367156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.01532 -40.31422 -38.19542 -35.41706 -34.68994 -33.92787 -33.54727 -31.95532 -31.47232 -30.00899 -29.50766 -28.15930 -25.50638 -24.98600 -23.97181 -23.02735 -22.23334 -21.18233 -20.60112 -19.96655 -19.01376 -18.23837 -17.86429 -17.14140 -16.51894 -15.83455 -15.41958 -15.04579 -14.74025 -14.63549 -14.42230 -14.07083 -13.95805 -13.71486 -13.62681 -13.42365 -13.27307 -13.10448 -13.01024 -12.75839 -12.71043 -12.15099 -12.03971 -11.75480 -11.72467 -11.64536 -11.46130 -10.97865 -10.93124 -10.91355 -10.76733 -10.44102 -10.24603 -10.20078 -10.02763 -10.02196 -9.90698 -9.66077 -9.54476 -9.01332 -8.87642 -6.94298 -5.79242 -3.07581 1.13399 1.78859 2.34868 2.67442 3.23190 3.41724 3.47407 3.48694 3.93516 4.08711 4.53773 4.64408 4.69597 4.80193 4.83820 4.87726 4.96035 5.02590 5.10712 5.13185 5.19249 5.23978 5.27963 5.28651 5.52961 5.55296 5.56396 5.58967 5.63293 5.69569 5.74072 5.76516 5.78087 5.91430 5.98840 6.08296 6.09020 6.10998 6.19522 6.21877 6.32478 6.43307 6.49604 6.63778 6.76143 6.82725 7.44582 7.67732 8.08172 8.11082 8.39864 9.51326 10.08593 10.43290 11.43599 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003845 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.399358 B = 7279.532138 C = 9140.090239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.064 3.936 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.013 3.987 7 C -0.078 4.078 8 C -0.248 4.248 9 C 0.600 3.400 10 O -0.529 6.529 11 N -0.701 5.701 12 C 0.154 3.846 13 H 0.090 0.910 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.102 4.102 19 H 0.087 0.913 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 19.922 -5.369 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.099 4.099 4 N -0.062 5.062 5 O 0.033 5.967 6 C -0.051 4.051 7 C -0.135 4.135 8 C -0.255 4.255 9 C 0.384 3.616 10 O -0.405 6.405 11 N -0.353 5.353 12 C 0.049 3.951 13 H 0.108 0.892 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.121 4.121 19 H 0.105 0.895 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.239 0.761 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.036 0.964 48 H 0.035 0.965 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.777 19.763 -6.349 21.547 hybrid contribution 0.587 -1.172 0.273 1.339 sum -5.190 18.592 -6.076 20.236 Atomic orbital electron populations 1.21717 0.93457 1.02723 1.02499 1.20053 0.96881 0.87270 1.04663 1.24801 1.00040 0.98666 0.86364 1.73604 1.16634 0.92575 1.23344 1.84528 1.62602 1.27018 1.22529 1.24579 0.98968 0.97636 0.83884 1.20457 1.02822 0.90859 0.99404 1.21977 1.12551 0.95428 0.95523 1.16835 0.83679 0.77410 0.83667 1.90811 1.28538 1.53277 1.67905 1.46113 1.15692 1.61949 1.11555 1.21046 1.00706 0.94387 0.78912 0.89203 1.21909 0.96944 0.97724 1.00107 1.21495 0.94746 0.97966 1.01106 1.21585 0.98419 0.95380 1.00458 1.21536 0.96794 0.97536 0.98975 1.21634 0.94285 0.94329 1.01850 0.89462 1.20639 0.94119 0.86775 0.95253 1.42355 1.43483 1.07903 1.43738 1.19204 1.15978 0.88185 1.13612 0.91330 1.24711 0.98917 0.98221 0.98993 1.69652 1.25368 1.31938 1.31248 0.86220 0.77521 0.84105 0.78541 1.21750 1.21759 1.20769 0.92558 0.91223 0.91899 0.89400 0.88920 0.88712 0.89179 0.88770 0.76065 0.90817 0.91719 0.92373 0.92377 0.91826 0.92240 0.92780 0.90191 0.96421 0.96526 0.78205 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 37.16 0.37 -1.25 16 2 C -0.05 -0.60 6.55 -27.88 -0.18 -0.79 16 3 C 0.06 0.83 6.84 -79.77 -0.55 0.29 16 4 N -0.36 -4.76 12.01 34.78 0.42 -4.34 16 5 O 0.09 1.12 11.06 18.64 0.21 1.32 16 6 C 0.01 0.13 7.55 -34.63 -0.26 -0.13 16 7 C -0.08 -0.49 10.33 36.01 0.37 -0.12 16 8 C -0.25 -3.10 6.24 -102.89 -0.64 -3.74 16 9 C 0.60 8.07 7.57 -12.53 -0.09 7.97 16 10 O -0.53 -8.71 16.77 5.27 0.09 -8.62 16 11 N -0.70 -8.50 3.61 -54.88 -0.20 -8.70 16 12 C 0.15 1.96 2.23 -67.93 -0.15 1.81 16 13 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 14 C -0.13 -1.38 5.60 -26.73 -0.15 -1.53 16 15 C -0.12 -1.11 5.77 -26.73 -0.15 -1.26 16 16 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 17 C -0.11 -1.50 4.91 -26.73 -0.13 -1.63 16 18 C -0.10 -1.48 2.02 -90.63 -0.18 -1.67 16 19 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.03 5.42 -4.04 -0.02 3.01 16 21 N -0.73 -17.66 5.33 -59.91 -0.32 -17.97 16 22 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 26 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.40 4.63 6.65 -40.82 -0.27 4.36 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.54 7.60 -51.93 -0.39 0.14 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 46 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.02 0.32 7.61 -51.93 -0.40 -0.08 16 49 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 50 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -32.17 403.25 -8.54 -40.71 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.33 Total: 8.94 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.18 Total: -7.65 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.62 Total: -57.94 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.29 Total: -7.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.17 -8.54 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498504156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.553 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds