Wall clock time and date at job start Tue Mar 31 2020 20:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47070 * 2 1 4 4 N 1.30016 * 127.33642 * 270.14229 * 3 2 1 5 5 O 1.20651 * 112.30112 * 180.30260 * 4 3 2 6 6 C 1.33497 * 113.15938 * 359.72259 * 5 4 3 7 7 C 1.50700 * 126.83202 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.33647 * 359.97438 * 6 5 4 9 9 C 1.47406 * 128.56139 * 179.97438 * 8 6 5 10 10 O 1.21606 * 119.99584 * 90.02285 * 9 8 6 11 11 N 1.34771 * 119.99819 * 270.02823 * 9 8 6 12 12 C 1.46506 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47020 * 34.99451 * 12 11 9 14 14 C 1.53005 * 109.46632 * 274.99522 * 12 11 9 15 15 C 1.52997 * 109.47452 * 299.99871 * 14 12 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 12 17 17 C 1.53000 * 109.47233 * 60.00194 * 16 15 14 18 18 C 1.52997 * 109.47060 * 299.99657 * 17 16 15 19 19 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 20 20 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47005 * 64.99872 * 20 18 17 22 22 C 1.36940 * 120.00284 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99632 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00388 * 180.02562 * 22 21 20 25 25 N 1.31626 * 119.99842 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00232 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47003 * 89.99817 * 26 24 22 28 28 H 1.48503 * 109.47139 * 209.99849 * 26 24 22 29 29 H 1.48500 * 109.46962 * 329.99986 * 26 24 22 30 30 H 1.08996 * 109.47198 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46711 * 299.99704 * 1 2 3 33 33 H 1.09003 * 109.46984 * 239.99993 * 2 1 3 34 34 H 1.08996 * 109.47198 * 120.00453 * 2 1 3 35 35 H 1.09000 * 109.46611 * 269.97044 * 7 6 5 36 36 H 1.09006 * 109.47157 * 29.96602 * 7 6 5 37 37 H 1.08999 * 109.47404 * 149.97083 * 7 6 5 38 38 H 0.97008 * 120.00272 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46935 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.46812 * 60.00088 * 14 12 11 41 41 H 1.08993 * 109.47194 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.46695 * 59.99734 * 15 14 12 43 43 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 44 44 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47398 * 59.99826 * 17 16 15 46 46 H 1.09001 * 109.47194 * 180.02562 * 17 16 15 47 47 H 1.08996 * 109.47729 * 184.99759 * 20 18 17 48 48 H 1.09001 * 109.47563 * 305.00337 * 20 18 17 49 49 H 0.96995 * 120.00463 * 0.02562 * 21 20 18 50 50 H 0.96996 * 119.99845 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2928 2.1651 -1.0337 5 8 2.6875 3.2614 -0.7208 6 6 2.7526 3.4385 0.6008 7 6 3.2001 4.6822 1.3246 8 6 2.3294 2.2620 1.1696 9 6 2.2094 1.9235 2.5992 10 8 1.1690 2.1406 3.1902 11 7 3.2529 1.3736 3.2513 12 6 3.1335 1.0367 4.6721 13 1 2.1181 0.7002 4.8816 14 6 3.4458 2.2732 5.5174 15 6 4.8710 2.7455 5.2232 16 6 5.8593 1.6294 5.5675 17 6 5.5471 0.3930 4.7222 18 6 4.1219 -0.0793 5.0163 19 1 4.0331 -0.3299 6.0734 20 6 3.8099 -1.3161 4.1715 21 7 4.6776 -2.4216 4.5851 22 6 4.5787 -3.6386 3.9652 23 1 3.8606 -3.7836 3.1716 24 6 5.4005 -4.6863 4.3574 25 7 6.2753 -4.5097 5.3249 26 14 5.2651 -6.3466 3.5122 27 1 6.1873 -6.3866 2.3489 28 1 5.6299 -7.4210 4.4703 29 1 3.8704 -6.5521 3.0455 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.2751 4.6344 1.4985 36 1 2.9687 5.5584 0.7188 37 1 2.6804 4.7535 2.2801 38 1 4.0827 1.2002 2.7798 39 1 3.3566 2.0227 6.5744 40 1 2.7416 3.0683 5.2720 41 1 5.0932 3.6266 5.8250 42 1 4.9597 2.9961 4.1661 43 1 5.7705 1.3788 6.6245 44 1 6.8747 1.9658 5.3575 45 1 5.6360 0.6436 3.6651 46 1 6.2510 -0.4023 4.9678 47 1 2.7672 -1.5999 4.3140 48 1 3.9847 -1.0911 3.1194 49 1 5.3223 -2.2916 5.2981 50 1 6.8494 -5.2419 5.5993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498504156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:58 Heat of formation + Delta-G solvation = -12.947514 kcal Electronic energy + Delta-G solvation = -30466.909821 eV Core-core repulsion = 26495.727736 eV Total energy + Delta-G solvation = -3971.182086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.95903 -41.40940 -39.32997 -36.47176 -36.35240 -34.86735 -34.45191 -33.70130 -32.41259 -31.23462 -30.88595 -28.89173 -27.02891 -26.09338 -24.92602 -24.67659 -23.30970 -22.23643 -21.86089 -20.88834 -20.05261 -19.43589 -18.98328 -18.76363 -17.50438 -16.94994 -16.72388 -16.29950 -16.10416 -15.69297 -15.50835 -15.24737 -15.13110 -15.01603 -14.85675 -14.61121 -14.25262 -14.10727 -14.02751 -13.75066 -13.51087 -13.41416 -13.11380 -12.97922 -12.87520 -12.71883 -12.63919 -12.59309 -12.53314 -12.11520 -11.92185 -11.90514 -11.84312 -11.44777 -11.29494 -11.17998 -11.02122 -11.00337 -10.84672 -10.42151 -10.07525 -8.98473 -7.95307 -5.23132 0.28247 0.80857 1.29690 1.46858 1.47479 1.55954 1.80495 2.26309 2.55216 3.00291 3.22112 3.38413 3.55942 3.76809 3.79796 3.84166 3.90951 4.06876 4.10575 4.19409 4.25570 4.27170 4.37491 4.43139 4.49588 4.51205 4.59889 4.62328 4.67033 4.68774 4.75274 4.80220 4.86933 4.93032 4.97162 5.02568 5.09223 5.10730 5.16276 5.19805 5.29786 5.32520 5.35315 5.45128 5.48317 5.53965 5.60760 6.27174 6.40850 7.06389 7.17443 7.34490 8.09910 8.34173 9.27948 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003845 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.399358 B = 7279.532138 C = 9140.090239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.052 3.948 4 N -0.374 5.374 5 O 0.095 5.905 6 C 0.035 3.965 7 C -0.079 4.079 8 C -0.276 4.276 9 C 0.609 3.391 10 O -0.562 6.562 11 N -0.692 5.692 12 C 0.161 3.839 13 H 0.071 0.929 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.089 4.089 19 H 0.081 0.919 20 C 0.161 3.839 21 N -0.739 5.739 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.006 0.994 48 H 0.021 0.979 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 21.850 -5.948 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.110 4.110 4 N -0.081 5.081 5 O 0.035 5.965 6 C -0.029 4.029 7 C -0.136 4.136 8 C -0.284 4.284 9 C 0.394 3.606 10 O -0.441 6.441 11 N -0.343 5.343 12 C 0.056 3.944 13 H 0.089 0.911 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.108 4.108 19 H 0.099 0.901 20 C 0.034 3.966 21 N -0.382 5.382 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.797 3.203 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.245 0.755 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.039 0.961 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.451 21.714 -6.951 23.442 hybrid contribution 0.456 -1.723 0.433 1.834 sum -4.995 19.991 -6.519 21.612 Atomic orbital electron populations 1.21666 0.92882 1.03371 1.01853 1.20081 0.97382 0.87076 1.04500 1.24995 1.00159 0.99104 0.86716 1.73588 1.17571 0.93188 1.23752 1.84504 1.62343 1.26440 1.23261 1.25283 0.96386 0.98043 0.83149 1.20738 1.04132 0.89602 0.99150 1.21915 1.15026 0.96601 0.94810 1.16857 0.83099 0.76735 0.83893 1.90793 1.29739 1.54828 1.68756 1.46030 1.15679 1.61314 1.11304 1.20911 0.98944 0.94804 0.79693 0.91064 1.21861 0.97979 0.96323 0.99866 1.21461 0.93020 0.97939 1.02121 1.21538 0.99621 0.94352 0.99697 1.21455 0.94860 0.97926 1.00068 1.21467 0.95772 0.93041 1.00504 0.90113 1.20750 0.92411 0.87236 0.96169 1.42517 1.43965 1.08409 1.43355 1.19566 1.15343 0.89427 1.13281 0.91176 1.25463 0.99137 1.01585 1.00045 1.69796 1.26387 1.32649 1.32839 0.85233 0.77814 0.79912 0.77377 1.21377 1.22136 1.19744 0.92158 0.89945 0.93458 0.88615 0.89935 0.86283 0.86826 0.88738 0.75478 0.90229 0.91542 0.90211 0.91481 0.91972 0.90963 0.92046 0.93439 0.97642 0.96150 0.79101 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.90 71.98 0.71 -2.38 16 2 C -0.05 -1.26 6.55 29.85 0.20 -1.06 16 3 C 0.05 1.35 6.84 45.15 0.31 1.66 16 4 N -0.37 -9.75 12.01 -44.79 -0.54 -10.29 16 5 O 0.10 2.10 11.06 76.96 0.85 2.95 16 6 C 0.04 0.66 7.55 25.48 0.19 0.85 16 7 C -0.08 -0.74 10.33 71.24 0.74 0.00 16 8 C -0.28 -6.67 6.24 -18.74 -0.12 -6.79 16 9 C 0.61 16.01 7.57 86.66 0.66 16.66 16 10 O -0.56 -18.44 16.77 -4.05 -0.07 -18.51 16 11 N -0.69 -16.16 3.61 -445.81 -1.61 -17.77 16 12 C 0.16 3.99 2.23 44.99 0.10 4.09 16 13 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 14 C -0.12 -2.37 5.60 30.60 0.17 -2.20 16 15 C -0.11 -1.73 5.77 30.59 0.18 -1.55 16 16 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 17 C -0.11 -2.78 4.91 30.59 0.15 -2.63 16 18 C -0.09 -2.58 2.02 -10.80 -0.02 -2.60 16 19 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 20 C 0.16 6.20 5.42 86.38 0.47 6.67 16 21 N -0.74 -36.48 5.33 -343.46 -1.83 -38.32 16 22 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 23 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 25 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 26 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 38 H 0.41 8.86 6.65 -92.70 -0.62 8.24 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.98 7.60 -2.39 -0.02 0.96 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.51 6.51 -2.39 -0.02 1.50 16 46 H 0.05 1.58 7.18 -2.39 -0.02 1.57 16 47 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.02 0.78 7.61 -2.39 -0.02 0.76 16 49 H 0.38 19.57 6.85 -92.71 -0.64 18.94 16 50 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -70.17 403.25 4.03 -66.15 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.30 Total: 33.25 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.22 Total: -7.51 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -3.70 Total: -124.23 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.78 Total: -15.56 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -70.17 4.03 -66.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498504156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.199 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds