Wall clock time and date at job start Tue Mar 31 2020 19:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29935 * 125.37665 * 2 1 4 4 C 1.36069 * 108.48024 * 180.02562 * 3 2 1 5 5 C 1.47418 * 126.44971 * 179.73964 * 4 3 2 6 6 O 1.21612 * 120.00112 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00102 * 0.02562 * 5 4 3 8 8 C 1.46502 * 119.99995 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46878 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.46878 * 179.97438 * 9 8 7 11 11 C 1.36940 * 120.00028 * 269.99994 * 10 9 8 12 12 H 1.08003 * 119.99808 * 15.23565 * 11 10 9 13 13 C 1.38807 * 120.00000 * 195.23799 * 11 10 9 14 14 N 1.31612 * 120.00306 * 46.91602 * 13 11 10 15 15 Si 1.86807 * 119.99784 * 226.92081 * 13 11 10 16 16 H 1.48497 * 109.47175 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47061 * 119.99980 * 15 13 11 18 18 H 1.48507 * 109.46872 * 239.99637 * 15 13 11 19 19 C 1.46498 * 120.00000 * 90.00528 * 10 9 8 20 20 C 1.54240 * 108.89637 * 69.44955 * 19 10 9 21 21 C 1.50480 * 108.52273 * 159.26435 * 20 19 10 22 22 C 1.54071 * 112.49717 * 94.15056 * 21 20 19 23 23 C 1.54065 * 112.81597 * 318.28266 * 22 21 20 24 24 C 1.50473 * 112.49778 * 318.28406 * 23 22 21 25 25 C 1.45547 * 108.89403 * 306.56790 * 19 10 9 26 26 C 1.36089 * 107.09714 * 359.97438 * 4 3 2 27 27 O 1.34045 * 125.38136 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46934 * 90.00116 * 1 2 3 29 29 H 1.09007 * 109.46760 * 209.99629 * 1 2 3 30 30 H 1.09000 * 109.47308 * 330.00118 * 1 2 3 31 31 H 0.97005 * 120.00392 * 0.02562 * 7 5 4 32 32 H 1.08991 * 109.47185 * 300.00196 * 8 7 5 33 33 H 1.09004 * 109.47087 * 60.00261 * 8 7 5 34 34 H 1.09000 * 109.47564 * 299.99918 * 9 8 7 35 35 H 1.09004 * 109.46929 * 60.00311 * 9 8 7 36 36 H 0.97008 * 120.00160 * 175.76898 * 14 13 11 37 37 H 1.09006 * 108.87205 * 187.96486 * 19 10 9 38 38 H 1.08997 * 109.62991 * 278.97366 * 20 19 10 39 39 H 1.08992 * 109.63201 * 39.55561 * 20 19 10 40 40 H 1.08995 * 108.87854 * 333.37857 * 21 20 19 41 41 H 1.08996 * 108.87684 * 214.92797 * 21 20 19 42 42 H 1.09004 * 108.81587 * 197.42181 * 22 21 20 43 43 H 1.09000 * 108.72684 * 79.08334 * 22 21 20 44 44 H 1.09007 * 108.87534 * 197.50692 * 23 22 21 45 45 H 1.08997 * 108.87729 * 79.06374 * 23 22 21 46 46 H 1.09002 * 109.62778 * 334.44381 * 24 23 22 47 47 H 1.08997 * 109.62685 * 213.86335 * 24 23 22 48 48 H 1.09003 * 108.89127 * 303.44299 * 25 19 10 49 49 H 1.08999 * 108.89528 * 62.02761 * 25 19 10 50 50 H 1.08005 * 126.52411 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6640 -0.0006 5 6 4.7439 1.5440 -0.0062 6 8 5.8604 1.0621 -0.0066 7 7 4.5877 2.8827 -0.0109 8 6 5.7631 3.7572 -0.0170 9 6 5.3110 5.2189 -0.0221 10 7 6.4864 6.0935 -0.0276 11 6 7.0377 6.5070 1.1558 12 1 6.7756 6.0081 2.0771 13 6 7.9333 7.5673 1.1711 14 7 7.6548 8.6736 0.5149 15 14 9.5342 7.4239 2.1232 16 1 9.6076 6.0893 2.7700 17 1 10.6798 7.5873 1.1926 18 1 9.5874 8.4817 3.1642 19 6 7.0718 6.5257 -1.2990 20 6 6.0993 7.5035 -1.9899 21 6 6.8728 8.3209 -2.9889 22 6 6.8237 7.7199 -4.4067 23 6 6.9771 6.1869 -4.4114 24 6 8.0316 5.7109 -3.4492 25 6 7.3496 5.3518 -2.1133 26 6 3.5660 -0.6969 -0.0003 27 8 2.2831 -1.0929 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.6971 3.2672 -0.0102 32 1 6.3634 3.5652 0.8722 33 1 6.3591 3.5585 -0.9077 34 1 4.7109 5.4106 -0.9116 35 1 4.7147 5.4179 0.8684 36 1 8.2509 9.4366 0.5753 37 1 8.0086 7.0452 -1.0973 38 1 5.3182 6.9421 -2.5025 39 1 5.6522 8.1623 -1.2456 40 1 7.9124 8.3801 -2.6669 41 1 6.4567 9.3280 -3.0182 42 1 7.6268 8.1554 -5.0012 43 1 5.8686 7.9789 -4.8638 44 1 7.2449 5.8623 -5.4170 45 1 6.0226 5.7361 -4.1398 46 1 8.7626 6.5028 -3.2860 47 1 8.5272 4.8294 -3.8559 48 1 8.0010 4.6803 -1.5538 49 1 6.4115 4.8384 -2.3242 50 1 4.4362 -1.3367 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499517512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:45 Heat of formation + Delta-G solvation = 0.135378 kcal Electronic energy + Delta-G solvation = -29826.635252 eV Core-core repulsion = 25856.020483 eV Total energy + Delta-G solvation = -3970.614769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.60928 -39.32637 -38.58460 -35.62613 -35.09366 -34.11160 -32.47316 -31.79588 -31.25026 -30.27642 -28.28941 -27.66506 -24.69071 -24.20617 -23.94849 -22.71572 -21.69930 -20.96021 -20.44169 -19.27499 -18.60079 -18.08425 -17.13019 -16.99418 -16.48320 -15.66843 -15.11099 -15.00138 -14.59645 -14.42286 -14.19392 -14.13023 -13.99381 -13.55933 -13.50651 -13.37654 -13.16296 -12.86959 -12.79507 -12.31923 -12.24431 -11.80837 -11.46569 -11.43739 -11.34708 -11.26196 -11.01359 -10.84488 -10.69163 -10.47228 -10.22732 -10.11107 -10.06614 -9.93880 -9.74412 -9.58722 -9.40554 -9.26049 -9.20794 -8.63562 -8.20337 -6.98389 -5.97885 -2.97994 0.97060 1.86412 2.36129 3.26331 3.38926 3.40655 3.53879 3.60172 3.72608 4.52776 4.59344 4.76538 4.97004 5.00405 5.07793 5.19584 5.20573 5.31186 5.39134 5.40449 5.50429 5.55640 5.79217 5.82624 5.86692 5.91323 5.92818 5.98721 6.08893 6.17852 6.28118 6.30131 6.41543 6.51828 6.61172 6.63678 6.66700 6.71158 6.82263 6.85145 6.89317 6.98097 7.10416 7.20182 7.26214 7.54077 7.66585 7.77718 7.93481 8.28097 8.37027 9.13134 9.85826 10.36115 11.09095 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.003078 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.216635 B = 9095.706544 C =10327.135246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.192 3.808 3 N -0.460 5.460 4 C -0.064 4.064 5 C 0.593 3.407 6 O -0.541 6.541 7 N -0.703 5.703 8 C 0.087 3.913 9 C 0.142 3.858 10 N -0.580 5.580 11 C -0.289 4.289 12 H 0.072 0.928 13 C 0.033 3.967 14 N -0.846 5.846 15 Si 0.848 3.152 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.294 1.294 19 C 0.188 3.812 20 C -0.112 4.112 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.127 4.127 26 C 0.005 3.995 27 O -0.200 6.200 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.405 0.595 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.050 0.950 50 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 -13.192 -6.636 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 N -0.192 5.192 4 C -0.184 4.184 5 C 0.378 3.622 6 O -0.419 6.419 7 N -0.352 5.352 8 C -0.038 4.038 9 C 0.014 3.986 10 N -0.300 5.300 11 C -0.416 4.416 12 H 0.090 0.910 13 C -0.170 4.170 14 N -0.485 5.485 15 Si 0.676 3.324 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.221 1.221 19 C 0.082 3.918 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.068 4.068 27 O -0.086 6.086 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.239 0.761 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.531 -12.702 -6.683 18.411 hybrid contribution 0.905 -0.492 0.519 1.154 sum -10.626 -13.195 -6.164 18.027 Atomic orbital electron populations 1.20307 0.80915 1.05358 1.04900 1.26342 0.96672 0.78379 1.00311 1.70781 1.00852 1.29935 1.17589 1.21977 0.92193 0.93173 1.11071 1.16769 0.85944 0.82280 0.77253 1.90825 1.24242 1.75462 1.51383 1.45930 1.11612 1.05171 1.72518 1.22751 0.86728 0.91647 1.02678 1.20759 0.90364 0.87814 0.99652 1.44107 1.29809 1.53517 1.02604 1.18909 1.22056 1.13670 0.86996 0.91022 1.24491 1.00832 0.94072 0.97630 1.70474 1.34389 0.99965 1.43666 0.87058 0.87579 0.78145 0.79638 1.20115 1.21447 1.22118 1.19196 0.96950 0.91763 0.83879 1.21643 0.97806 0.98502 0.97135 1.21175 1.01428 0.98356 0.93378 1.21957 1.00279 0.95168 0.97901 1.21296 0.99468 0.95900 0.98342 1.21279 0.98040 1.00208 0.95804 1.21202 0.99645 1.00231 0.95506 1.25275 0.84672 0.95804 1.01087 1.84372 1.16804 1.37936 1.69479 0.88736 0.89224 0.87821 0.76052 0.91302 0.91189 0.94065 0.92964 0.93607 0.89988 0.94848 0.90486 0.92259 0.93525 0.93318 0.93269 0.93502 0.92421 0.91816 0.92926 0.92479 0.93148 0.75339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.89 8.30 -13.08 -0.11 1.78 16 3 N -0.46 -5.86 11.06 -7.66 -0.08 -5.95 16 4 C -0.06 -0.89 6.99 -83.02 -0.58 -1.47 16 5 C 0.59 9.87 7.81 -12.52 -0.10 9.77 16 6 O -0.54 -10.52 16.89 5.27 0.09 -10.43 16 7 N -0.70 -11.33 5.55 -61.39 -0.34 -11.67 16 8 C 0.09 1.61 5.68 -4.04 -0.02 1.59 16 9 C 0.14 2.78 5.01 -4.04 -0.02 2.76 16 10 N -0.58 -13.37 2.38 -168.95 -0.40 -13.77 16 11 C -0.29 -7.60 9.49 -15.06 -0.14 -7.74 16 12 H 0.07 1.92 8.06 -52.48 -0.42 1.50 16 13 C 0.03 0.87 4.05 -17.44 -0.07 0.80 16 14 N -0.85 -22.86 12.12 55.49 0.67 -22.19 16 15 Si 0.85 20.83 29.69 -169.99 -5.05 15.79 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 19 C 0.19 4.05 1.33 -70.80 -0.09 3.95 16 20 C -0.11 -2.24 4.46 -27.34 -0.12 -2.37 16 21 C -0.11 -1.90 5.31 -27.43 -0.15 -2.05 16 22 C -0.12 -1.73 5.85 -25.62 -0.15 -1.88 16 23 C -0.11 -1.66 5.31 -27.44 -0.15 -1.81 16 24 C -0.11 -1.87 5.61 -27.35 -0.15 -2.02 16 25 C -0.13 -2.39 3.26 -29.60 -0.10 -2.49 16 26 C 0.01 0.06 11.95 29.96 0.36 0.42 16 27 O -0.20 -2.03 10.73 6.53 0.07 -1.96 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.40 5.84 8.20 -40.82 -0.33 5.51 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.35 5.40 -51.93 -0.28 1.07 16 34 H 0.04 0.75 7.26 -51.93 -0.38 0.38 16 35 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 36 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 37 H 0.08 2.04 5.35 -51.93 -0.28 1.76 16 38 H 0.03 0.62 6.68 -51.93 -0.35 0.28 16 39 H 0.08 1.81 7.98 -51.93 -0.41 1.40 16 40 H 0.06 1.17 6.63 -51.93 -0.34 0.82 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.06 0.87 6.63 -51.93 -0.34 0.53 16 46 H 0.06 1.09 6.98 -51.93 -0.36 0.72 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 49 H 0.05 0.92 5.61 -51.93 -0.29 0.62 16 50 H 0.23 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -30.67 390.82 -8.34 -39.02 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.98 Total: 5.94 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.22 Total: -0.66 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.16 Total: -53.58 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.16 Total: -12.39 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.05 Total: 15.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.67 -8.34 -39.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499517512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.155 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds