Wall clock time and date at job start Tue Mar 31 2020 19:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29935 * 125.37665 * 2 1 4 4 C 1.36069 * 108.48024 * 180.02562 * 3 2 1 5 5 C 1.47418 * 126.44971 * 179.73964 * 4 3 2 6 6 O 1.21612 * 120.00112 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00102 * 0.02562 * 5 4 3 8 8 C 1.46502 * 119.99995 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46878 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.46878 * 179.97438 * 9 8 7 11 11 C 1.36940 * 120.00028 * 269.99994 * 10 9 8 12 12 H 1.08003 * 119.99808 * 15.23565 * 11 10 9 13 13 C 1.38807 * 120.00000 * 195.23799 * 11 10 9 14 14 N 1.31612 * 120.00306 * 46.91602 * 13 11 10 15 15 Si 1.86807 * 119.99784 * 226.92081 * 13 11 10 16 16 H 1.48497 * 109.47175 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47061 * 119.99980 * 15 13 11 18 18 H 1.48507 * 109.46872 * 239.99637 * 15 13 11 19 19 C 1.46498 * 120.00000 * 90.00528 * 10 9 8 20 20 C 1.54240 * 108.89637 * 69.44955 * 19 10 9 21 21 C 1.50480 * 108.52273 * 159.26435 * 20 19 10 22 22 C 1.54071 * 112.49717 * 94.15056 * 21 20 19 23 23 C 1.54065 * 112.81597 * 318.28266 * 22 21 20 24 24 C 1.50473 * 112.49778 * 318.28406 * 23 22 21 25 25 C 1.45547 * 108.89403 * 306.56790 * 19 10 9 26 26 C 1.36089 * 107.09714 * 359.97438 * 4 3 2 27 27 O 1.34045 * 125.38136 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46934 * 90.00116 * 1 2 3 29 29 H 1.09007 * 109.46760 * 209.99629 * 1 2 3 30 30 H 1.09000 * 109.47308 * 330.00118 * 1 2 3 31 31 H 0.97005 * 120.00392 * 0.02562 * 7 5 4 32 32 H 1.08991 * 109.47185 * 300.00196 * 8 7 5 33 33 H 1.09004 * 109.47087 * 60.00261 * 8 7 5 34 34 H 1.09000 * 109.47564 * 299.99918 * 9 8 7 35 35 H 1.09004 * 109.46929 * 60.00311 * 9 8 7 36 36 H 0.97008 * 120.00160 * 175.76898 * 14 13 11 37 37 H 1.09006 * 108.87205 * 187.96486 * 19 10 9 38 38 H 1.08997 * 109.62991 * 278.97366 * 20 19 10 39 39 H 1.08992 * 109.63201 * 39.55561 * 20 19 10 40 40 H 1.08995 * 108.87854 * 333.37857 * 21 20 19 41 41 H 1.08996 * 108.87684 * 214.92797 * 21 20 19 42 42 H 1.09004 * 108.81587 * 197.42181 * 22 21 20 43 43 H 1.09000 * 108.72684 * 79.08334 * 22 21 20 44 44 H 1.09007 * 108.87534 * 197.50692 * 23 22 21 45 45 H 1.08997 * 108.87729 * 79.06374 * 23 22 21 46 46 H 1.09002 * 109.62778 * 334.44381 * 24 23 22 47 47 H 1.08997 * 109.62685 * 213.86335 * 24 23 22 48 48 H 1.09003 * 108.89127 * 303.44299 * 25 19 10 49 49 H 1.08999 * 108.89528 * 62.02761 * 25 19 10 50 50 H 1.08005 * 126.52411 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6640 -0.0006 5 6 4.7439 1.5440 -0.0062 6 8 5.8604 1.0621 -0.0066 7 7 4.5877 2.8827 -0.0109 8 6 5.7631 3.7572 -0.0170 9 6 5.3110 5.2189 -0.0221 10 7 6.4864 6.0935 -0.0276 11 6 7.0377 6.5070 1.1558 12 1 6.7756 6.0081 2.0771 13 6 7.9333 7.5673 1.1711 14 7 7.6548 8.6736 0.5149 15 14 9.5342 7.4239 2.1232 16 1 9.6076 6.0893 2.7700 17 1 10.6798 7.5873 1.1926 18 1 9.5874 8.4817 3.1642 19 6 7.0718 6.5257 -1.2990 20 6 6.0993 7.5035 -1.9899 21 6 6.8728 8.3209 -2.9889 22 6 6.8237 7.7199 -4.4067 23 6 6.9771 6.1869 -4.4114 24 6 8.0316 5.7109 -3.4492 25 6 7.3496 5.3518 -2.1133 26 6 3.5660 -0.6969 -0.0003 27 8 2.2831 -1.0929 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.6971 3.2672 -0.0102 32 1 6.3634 3.5652 0.8722 33 1 6.3591 3.5585 -0.9077 34 1 4.7109 5.4106 -0.9116 35 1 4.7147 5.4179 0.8684 36 1 8.2509 9.4366 0.5753 37 1 8.0086 7.0452 -1.0973 38 1 5.3182 6.9421 -2.5025 39 1 5.6522 8.1623 -1.2456 40 1 7.9124 8.3801 -2.6669 41 1 6.4567 9.3280 -3.0182 42 1 7.6268 8.1554 -5.0012 43 1 5.8686 7.9789 -4.8638 44 1 7.2449 5.8623 -5.4170 45 1 6.0226 5.7361 -4.1398 46 1 8.7626 6.5028 -3.2860 47 1 8.5272 4.8294 -3.8559 48 1 8.0010 4.6803 -1.5538 49 1 6.4115 4.8384 -2.3242 50 1 4.4362 -1.3367 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499517512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:44 Heat of formation + Delta-G solvation = -20.666335 kcal Electronic energy + Delta-G solvation = -29827.537282 eV Core-core repulsion = 25856.020483 eV Total energy + Delta-G solvation = -3971.516799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.45771 -40.72945 -40.10483 -37.16831 -36.03452 -35.62150 -33.65371 -33.14003 -32.78468 -31.77788 -29.64956 -28.67929 -26.33026 -25.62532 -25.29320 -24.12222 -22.78719 -22.35280 -21.65311 -20.83940 -19.96376 -19.27119 -18.80905 -17.95802 -17.47305 -17.08003 -16.65686 -16.52544 -16.27165 -15.85268 -15.54052 -15.41145 -15.04393 -14.92111 -14.84267 -14.50005 -14.32505 -13.98521 -13.86840 -13.70138 -13.60850 -13.25499 -13.08153 -12.85677 -12.82032 -12.74446 -12.47692 -12.37013 -12.23939 -11.94996 -11.91039 -11.65836 -11.48049 -11.38084 -11.22635 -11.12390 -10.99799 -10.88201 -10.26505 -10.18334 -9.92869 -8.90791 -8.02650 -5.02397 0.04870 0.95103 1.38450 1.49327 1.57338 1.58604 2.04638 2.19514 2.53464 2.89047 3.05533 3.56325 3.76271 3.79156 3.91080 4.08632 4.16184 4.22494 4.30247 4.41684 4.44156 4.47586 4.52267 4.52990 4.63785 4.68459 4.70090 4.75088 4.76230 4.86901 4.96823 5.01149 5.03948 5.10682 5.15100 5.22819 5.26042 5.28996 5.36908 5.40297 5.44657 5.50232 5.56144 5.65981 5.76950 5.83045 6.04434 6.29223 6.30089 6.58990 7.06168 7.14205 7.92054 8.37820 9.02783 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.003078 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.216635 B = 9095.706544 C =10327.135246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.203 3.797 3 N -0.490 5.490 4 C -0.098 4.098 5 C 0.594 3.406 6 O -0.576 6.576 7 N -0.697 5.697 8 C 0.109 3.891 9 C 0.149 3.851 10 N -0.595 5.595 11 C -0.295 4.295 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.865 5.865 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.294 1.294 19 C 0.194 3.806 20 C -0.097 4.097 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.111 4.111 25 C -0.120 4.120 26 C 0.026 3.974 27 O -0.195 6.195 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.414 0.586 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.059 0.941 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 -14.955 -8.494 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.221 5.221 4 C -0.217 4.217 5 C 0.380 3.620 6 O -0.457 6.457 7 N -0.347 5.347 8 C -0.018 4.018 9 C 0.021 3.979 10 N -0.316 5.316 11 C -0.424 4.424 12 H 0.076 0.924 13 C -0.203 4.203 14 N -0.505 5.505 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.221 1.221 19 C 0.088 3.912 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.049 4.049 27 O -0.081 6.081 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.251 0.749 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -13.344 -14.466 -8.544 21.455 hybrid contribution 1.352 -0.020 1.149 1.774 sum -11.993 -14.485 -7.395 20.207 Atomic orbital electron populations 1.20636 0.77409 1.06848 1.06561 1.27354 0.98176 0.77509 0.97638 1.70744 1.00541 1.31346 1.19476 1.21624 0.91879 0.93736 1.14450 1.17117 0.86522 0.82302 0.76051 1.90795 1.25883 1.75992 1.52988 1.45761 1.11209 1.05147 1.72617 1.22259 0.87158 0.91363 1.00978 1.20764 0.89342 0.87574 1.00174 1.44274 1.30996 1.53963 1.02333 1.19002 1.22499 1.13030 0.87833 0.92370 1.24879 1.02246 0.94106 0.99072 1.70506 1.34742 1.00163 1.45106 0.86305 0.85135 0.77498 0.78513 1.20647 1.21784 1.22149 1.19155 0.95534 0.92695 0.83774 1.21427 0.97874 0.97751 0.96618 1.21103 0.99443 0.98349 0.95073 1.21901 1.01923 0.95373 0.95462 1.21281 0.98718 0.95485 0.99296 1.21264 0.98262 1.00737 0.94649 1.21069 0.99914 0.98480 0.96406 1.25693 0.85650 0.95074 0.98453 1.84429 1.16411 1.37994 1.69277 0.86799 0.86833 0.87167 0.74945 0.94162 0.91780 0.92273 0.93481 0.93831 0.93736 0.93140 0.94371 0.94582 0.93621 0.91817 0.91478 0.90670 0.92471 0.92989 0.91043 0.94439 0.92245 0.73058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.20 3.51 8.30 88.39 0.73 4.24 16 3 N -0.49 -11.83 11.06 -293.05 -3.24 -15.07 16 4 C -0.10 -2.64 6.99 40.41 0.28 -2.36 16 5 C 0.59 19.85 7.81 86.66 0.68 20.53 16 6 O -0.58 -22.71 16.89 -4.07 -0.07 -22.78 16 7 N -0.70 -22.66 5.55 -466.38 -2.59 -25.25 16 8 C 0.11 4.12 5.68 86.38 0.49 4.61 16 9 C 0.15 5.90 5.01 86.38 0.43 6.33 16 10 N -0.59 -28.27 2.38 -688.45 -1.64 -29.91 16 11 C -0.30 -16.09 9.49 84.03 0.80 -15.29 16 12 H 0.06 3.26 8.06 -2.91 -0.02 3.23 16 13 C 0.00 -0.09 4.05 84.86 0.34 0.25 16 14 N -0.86 -48.33 12.12 21.65 0.26 -48.07 16 15 Si 0.90 44.32 29.69 68.60 2.04 46.36 16 16 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 17 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 18 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 19 C 0.19 8.53 1.33 43.14 0.06 8.59 16 20 C -0.10 -3.94 4.46 30.20 0.13 -3.81 16 21 C -0.10 -3.64 5.31 30.14 0.16 -3.48 16 22 C -0.11 -2.99 5.85 31.32 0.18 -2.80 16 23 C -0.11 -2.92 5.31 30.14 0.16 -2.76 16 24 C -0.11 -3.43 5.61 30.20 0.17 -3.26 16 25 C -0.12 -4.50 3.26 28.74 0.09 -4.41 16 26 C 0.03 0.52 11.95 67.32 0.80 1.33 16 27 O -0.19 -3.47 10.73 0.44 0.00 -3.47 16 28 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.41 11.89 8.20 -92.70 -0.76 11.13 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.52 5.40 -2.39 -0.01 2.51 16 34 H 0.06 2.13 7.26 -2.39 -0.02 2.12 16 35 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 36 H 0.25 13.72 8.32 -92.70 -0.77 12.95 16 37 H 0.04 2.30 5.35 -2.38 -0.01 2.29 16 38 H 0.05 1.83 6.68 -2.39 -0.02 1.82 16 39 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 40 H 0.04 1.44 6.63 -2.39 -0.02 1.43 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.06 1.54 6.63 -2.39 -0.02 1.52 16 46 H 0.05 1.74 6.98 -2.39 -0.02 1.72 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 49 H 0.06 2.10 5.61 -2.39 -0.01 2.09 16 50 H 0.25 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -69.20 390.82 1.23 -67.97 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.19 Total: 22.13 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.27 Total: 8.09 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -7.21 Total: -118.30 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.04 Total: 46.36 kcal Total: -69.20 1.23 -67.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499517512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.308 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds