Wall clock time and date at job start Tue Mar 31 2020 20:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46993 * 2 1 4 4 N 1.30016 * 127.33178 * 269.99927 * 3 2 1 5 5 O 1.20661 * 112.30105 * 179.97438 * 4 3 2 6 6 C 1.33491 * 113.15574 * 359.75878 * 5 4 3 7 7 C 1.50703 * 126.83177 * 180.29901 * 6 5 4 8 8 C 1.37367 * 106.34252 * 0.38586 * 6 5 4 9 9 C 1.47393 * 128.56325 * 179.90736 * 8 6 5 10 10 O 1.21601 * 120.00490 * 269.67738 * 9 8 6 11 11 N 1.34784 * 119.99652 * 89.68259 * 9 8 6 12 12 C 1.46496 * 119.99857 * 174.77029 * 11 9 8 13 13 H 1.09001 * 109.47104 * 38.92803 * 12 11 9 14 14 C 1.53001 * 109.46939 * 158.92627 * 12 11 9 15 15 N 1.46493 * 109.47225 * 302.64185 * 14 12 11 16 16 C 1.36940 * 119.99750 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00331 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00091 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99836 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46943 * 90.00309 * 20 18 16 22 22 H 1.48498 * 109.47447 * 210.00523 * 20 18 16 23 23 H 1.48499 * 109.47085 * 330.00794 * 20 18 16 24 24 C 1.53001 * 109.47317 * 278.92811 * 12 11 9 25 25 C 1.54266 * 110.03159 * 298.70279 * 24 12 11 26 26 C 1.54888 * 104.19660 * 217.10395 * 25 24 12 27 27 C 1.54889 * 102.74847 * 37.94364 * 26 25 24 28 28 C 1.53873 * 110.03347 * 181.53755 * 24 12 11 29 29 H 1.09007 * 109.47039 * 300.00129 * 1 2 3 30 30 H 1.08998 * 109.47409 * 60.00042 * 1 2 3 31 31 H 1.09002 * 109.47436 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46749 * 240.00029 * 2 1 3 33 33 H 1.08995 * 109.47017 * 119.99610 * 2 1 3 34 34 H 1.09004 * 109.47014 * 270.11036 * 7 6 5 35 35 H 1.09002 * 109.46736 * 30.10208 * 7 6 5 36 36 H 1.08991 * 109.47162 * 150.10519 * 7 6 5 37 37 H 0.96998 * 120.00115 * 354.76857 * 11 9 8 38 38 H 1.09007 * 109.46868 * 62.64321 * 14 12 11 39 39 H 1.09006 * 109.46807 * 182.63744 * 14 12 11 40 40 H 0.96993 * 120.00423 * 359.97438 * 15 14 12 41 41 H 0.97003 * 119.99624 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.01408 * 60.14792 * 24 12 11 43 43 H 1.08997 * 110.48748 * 335.78655 * 25 24 12 44 44 H 1.09000 * 110.48401 * 98.42732 * 25 24 12 45 45 H 1.09001 * 110.75432 * 279.63202 * 26 25 24 46 46 H 1.08994 * 110.91725 * 156.33415 * 26 25 24 47 47 H 1.08997 * 110.48820 * 203.37839 * 27 26 25 48 48 H 1.09000 * 110.60023 * 80.78759 * 27 26 25 49 49 H 1.09003 * 110.03034 * 238.57502 * 28 24 12 50 50 H 1.09003 * 110.02993 * 359.97438 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6831 3.2631 -0.7209 6 6 2.7407 3.4428 0.6006 7 6 3.1732 4.6918 1.3245 8 6 2.3291 2.2622 1.1696 9 6 2.2086 1.9241 2.5991 10 8 3.1517 1.4334 3.1895 11 7 1.0531 2.1587 3.2520 12 6 0.8938 1.7188 4.6403 13 1 1.8270 1.8770 5.1809 14 6 -0.2238 2.5246 5.3055 15 7 0.0897 3.9533 5.2248 16 6 -0.7721 4.8746 5.7575 17 1 -1.6831 4.5479 6.2369 18 6 -0.4753 6.2285 5.6806 19 7 -1.3039 7.1139 6.1922 20 14 1.1000 6.7936 4.8509 21 1 0.8441 7.0213 3.4058 22 1 1.5632 8.0580 5.4769 23 1 2.1450 5.7506 5.0101 24 6 0.5352 0.2317 4.6662 25 6 -0.8012 -0.0025 3.9320 26 6 -1.4993 -1.1112 4.7582 27 6 -1.1285 -0.7368 6.2147 28 6 0.3271 -0.2352 6.1175 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2483 4.6556 1.5009 35 1 2.9340 5.5649 0.7172 36 1 2.6504 4.7584 2.2785 37 1 0.3269 2.6188 2.8027 38 1 -1.1663 2.3299 4.7936 39 1 -0.3109 2.2302 6.3515 40 1 0.9080 4.2468 4.7946 41 1 -1.0966 8.0600 6.1380 42 1 1.3273 -0.3514 4.1964 43 1 -1.4009 0.9077 3.9316 44 1 -0.6217 -0.3426 2.9121 45 1 -1.1034 -2.0931 4.4991 46 1 -2.5794 -1.0817 4.6147 47 1 -1.1879 -1.6127 6.8607 48 1 -1.7806 0.0542 6.5852 49 1 1.0177 -1.0454 6.3518 50 1 0.4820 0.5976 6.8035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569613834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:24 Heat of formation + Delta-G solvation = -4.420624 kcal Electronic energy + Delta-G solvation = -30943.272601 eV Core-core repulsion = 26972.460269 eV Total energy + Delta-G solvation = -3970.812332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.97161 -41.26919 -39.37710 -36.89674 -36.37567 -35.31119 -34.69854 -33.29664 -32.39214 -31.25349 -29.52963 -29.03211 -28.07022 -26.29070 -25.09823 -24.41744 -23.27467 -22.01035 -21.34641 -20.86985 -20.31049 -19.62116 -18.98204 -18.79661 -17.56881 -17.51428 -16.76828 -16.45931 -16.17861 -15.75004 -15.62693 -15.54000 -15.15140 -14.99149 -14.79478 -14.45126 -14.37257 -14.25443 -14.15962 -13.77268 -13.66520 -13.56302 -13.35601 -12.82275 -12.64597 -12.63305 -12.52254 -12.26056 -12.15253 -11.96665 -11.91979 -11.86368 -11.82162 -11.73916 -11.43136 -11.31883 -11.14068 -11.03898 -10.90987 -10.48978 -10.12875 -9.28762 -8.01278 -5.35196 0.19638 0.79843 1.23821 1.34935 1.40356 1.47277 1.69908 2.19119 2.48567 2.98636 3.16305 3.30527 3.45593 3.59584 3.73048 3.83810 3.84293 3.93520 4.07667 4.09159 4.25329 4.28639 4.30030 4.35913 4.43613 4.47962 4.55576 4.63954 4.70390 4.75368 4.82236 4.83374 4.88402 4.89814 4.92917 4.95218 5.02982 5.09112 5.15377 5.16512 5.25828 5.30506 5.34017 5.49323 5.53743 5.60645 5.77487 6.21171 6.36341 7.00452 7.07755 7.10124 7.82170 8.00923 9.19838 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007639 B = 0.005864 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3664.720802 B = 4774.134413 C = 7517.448127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.064 3.936 4 N -0.373 5.373 5 O 0.091 5.909 6 C 0.031 3.969 7 C -0.089 4.089 8 C -0.275 4.275 9 C 0.609 3.391 10 O -0.561 6.561 11 N -0.695 5.695 12 C 0.150 3.850 13 H 0.069 0.931 14 C 0.150 3.850 15 N -0.755 5.755 16 C -0.229 4.229 17 H 0.061 0.939 18 C -0.060 4.060 19 N -0.981 5.981 20 Si 0.942 3.058 21 H -0.263 1.263 22 H -0.300 1.300 23 H -0.258 1.258 24 C -0.088 4.088 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -16.801 -11.344 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.099 4.099 4 N -0.081 5.081 5 O 0.032 5.968 6 C -0.033 4.033 7 C -0.146 4.146 8 C -0.282 4.282 9 C 0.394 3.606 10 O -0.440 6.440 11 N -0.344 5.344 12 C 0.046 3.954 13 H 0.087 0.913 14 C 0.024 3.976 15 N -0.401 5.401 16 C -0.360 4.360 17 H 0.079 0.921 18 C -0.251 4.251 19 N -0.632 5.632 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.227 1.227 23 H -0.183 1.183 24 C -0.109 4.109 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.160 4.160 28 C -0.160 4.160 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.290 -17.254 -12.120 21.739 hybrid contribution 0.539 1.209 0.510 1.419 sum 5.828 -16.045 -11.610 20.644 Atomic orbital electron populations 1.21741 0.92225 1.03866 1.02217 1.20140 0.97676 0.85953 1.04745 1.25129 0.99432 0.99551 0.85776 1.73577 1.17706 0.92943 1.23840 1.84512 1.62998 1.26631 1.22687 1.25010 0.97026 0.97698 0.83534 1.20700 1.04140 0.90707 0.99016 1.21933 1.15059 0.96173 0.95050 1.16888 0.82358 0.77305 0.84065 1.90787 1.39138 1.45603 1.68501 1.45959 1.16019 1.58481 1.13985 1.21254 0.98762 0.94506 0.80879 0.91274 1.21184 0.95867 0.81874 0.98708 1.42676 1.24288 1.02329 1.70837 1.18984 1.00934 0.87324 1.28770 0.92137 1.25436 1.01525 0.95919 1.02259 1.69873 1.39452 1.01132 1.52735 0.85605 0.80675 0.77463 0.79360 1.18847 1.22743 1.18312 1.22003 0.98650 0.92955 0.97245 1.22526 0.94821 0.99473 0.99059 1.22448 1.00346 0.98380 0.94293 1.22346 0.95319 1.00826 0.97539 1.22222 0.97890 1.00798 0.95060 0.92506 0.92704 0.89212 0.88427 0.89302 0.86766 0.86659 0.90018 0.75424 0.93332 0.93679 0.80334 0.93429 0.91174 0.91516 0.90940 0.90731 0.91028 0.90647 0.92359 0.91003 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.05 -0.87 6.55 29.85 0.20 -0.67 16 3 C 0.06 1.58 6.84 45.16 0.31 1.89 16 4 N -0.37 -9.88 12.01 -44.77 -0.54 -10.42 16 5 O 0.09 2.31 11.06 77.00 0.85 3.16 16 6 C 0.03 0.76 7.55 25.48 0.19 0.96 16 7 C -0.09 -1.78 10.33 71.24 0.74 -1.05 16 8 C -0.27 -7.40 6.25 -18.74 -0.12 -7.51 16 9 C 0.61 17.97 7.51 86.65 0.65 18.62 16 10 O -0.56 -20.05 16.81 -4.03 -0.07 -20.11 16 11 N -0.69 -19.08 4.32 -445.83 -1.93 -21.00 16 12 C 0.15 4.32 1.81 44.99 0.08 4.40 16 13 H 0.07 2.29 7.63 -2.39 -0.02 2.28 16 14 C 0.15 5.07 5.24 86.38 0.45 5.52 16 15 N -0.76 -32.58 5.26 -343.44 -1.80 -34.38 16 16 C -0.23 -12.34 10.47 84.03 0.88 -11.46 16 17 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 18 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 19 N -0.98 -60.97 13.97 21.65 0.30 -60.67 16 20 Si 0.94 42.97 27.74 68.60 1.90 44.87 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.26 -10.85 6.52 99.48 0.65 -10.20 16 24 C -0.09 -2.05 2.90 -10.07 -0.03 -2.08 16 25 C -0.12 -2.41 5.85 31.67 0.19 -2.22 16 26 C -0.12 -2.00 6.91 31.88 0.22 -1.78 16 27 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 28 C -0.12 -2.65 5.94 31.32 0.19 -2.46 16 29 H 0.06 0.95 7.43 -2.38 -0.02 0.94 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.91 8.11 -2.39 -0.02 1.89 16 37 H 0.41 10.82 8.56 -92.71 -0.79 10.02 16 38 H 0.05 1.60 5.93 -2.38 -0.01 1.59 16 39 H 0.05 1.58 6.47 -2.38 -0.02 1.57 16 40 H 0.36 15.34 5.28 -92.71 -0.49 14.85 16 41 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.49 5.63 -2.39 -0.01 1.48 16 44 H 0.07 1.28 7.43 -2.39 -0.02 1.26 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.06 1.47 6.22 -2.39 -0.01 1.46 16 Total: -1.00 -68.92 401.00 3.68 -65.24 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.38 Total: 37.72 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.34 Total: -4.41 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -3.97 Total: -126.47 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.78 Total: -16.96 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -68.92 3.68 -65.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569613834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.818 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds