Wall clock time and date at job start Tue Mar 31 2020 19:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47462 * 2 1 4 4 C 1.50699 * 115.54843 * 294.72896 * 3 2 1 5 5 O 1.21278 * 120.00029 * 100.56610 * 4 3 2 6 6 N 1.34771 * 120.00349 * 280.56047 * 4 3 2 7 7 C 1.46616 * 125.30012 * 355.00932 * 6 4 3 8 8 C 1.54101 * 107.07502 * 197.87887 * 7 6 4 9 9 H 1.08998 * 112.91896 * 97.39441 * 8 7 6 10 10 C 1.54144 * 108.36326 * 223.21809 * 8 7 6 11 11 N 1.47827 * 107.25820 * 110.55685 * 10 8 7 12 12 C 1.46903 * 111.00300 * 214.49836 * 11 10 8 13 13 C 1.50695 * 109.47493 * 189.99889 * 12 11 10 14 14 O 1.21296 * 120.00107 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00041 * 179.97438 * 13 12 11 16 16 C 1.37103 * 120.00250 * 179.97438 * 15 13 12 17 17 H 1.08010 * 119.99474 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00439 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00218 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99984 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46956 * 89.99587 * 20 18 16 22 22 H 1.48497 * 109.47017 * 209.99851 * 20 18 16 23 23 H 1.48504 * 109.46853 * 329.99989 * 20 18 16 24 24 C 1.48558 * 105.86594 * 335.03941 * 11 10 8 25 25 C 1.54546 * 103.17339 * 39.39219 * 24 11 10 26 26 H 1.08998 * 113.10216 * 83.98860 * 25 24 11 27 27 C 1.46572 * 125.30778 * 175.00560 * 6 4 3 28 28 C 1.53002 * 117.51662 * 80.42754 * 3 2 1 29 29 C 1.52998 * 60.00018 * 107.48284 * 28 3 2 30 30 H 1.09005 * 109.46715 * 55.68568 * 1 2 3 31 31 H 1.08992 * 109.47363 * 175.69029 * 1 2 3 32 32 H 1.09001 * 109.46979 * 295.69217 * 1 2 3 33 33 H 1.08997 * 109.47075 * 240.00084 * 2 1 3 34 34 H 1.08996 * 109.47479 * 120.00379 * 2 1 3 35 35 H 1.08997 * 109.91455 * 317.23298 * 7 6 4 36 36 H 1.08994 * 109.91639 * 78.32600 * 7 6 4 37 37 H 1.09000 * 109.88415 * 229.97097 * 10 8 7 38 38 H 1.09004 * 109.88286 * 350.97960 * 10 8 7 39 39 H 1.09001 * 109.46725 * 309.99857 * 12 11 10 40 40 H 1.08997 * 109.47090 * 69.99388 * 12 11 10 41 41 H 0.96994 * 120.00429 * 0.02562 * 15 13 12 42 42 H 0.96999 * 119.99632 * 180.02562 * 19 18 16 43 43 H 1.08995 * 110.67579 * 157.84794 * 24 11 10 44 44 H 1.09006 * 110.67215 * 280.82673 * 24 11 10 45 45 H 1.09003 * 109.73419 * 297.68495 * 27 6 4 46 46 H 1.08998 * 109.73190 * 58.32709 * 27 6 4 47 47 H 1.08996 * 117.49637 * 214.97026 * 28 3 2 48 48 H 1.08997 * 117.49856 * 359.97438 * 28 3 2 49 49 H 1.08999 * 117.50085 * 252.51465 * 29 28 3 50 50 H 1.09006 * 117.50353 * 107.48482 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7205 2.2449 -1.2350 5 8 0.7985 3.0326 -1.2245 6 7 2.4594 2.0872 -2.3510 7 6 3.6577 1.2497 -2.4624 8 6 4.4152 1.7092 -3.7233 9 1 5.2251 2.4043 -3.5022 10 6 4.8909 0.4576 -4.4871 11 7 4.1012 0.3784 -5.7342 12 6 3.8372 -1.0190 -6.1024 13 6 3.2513 -1.0709 -7.4898 14 8 3.0717 -0.0448 -8.1112 15 7 2.9278 -2.2576 -8.0407 16 6 2.3942 -2.3049 -9.3028 17 1 2.2336 -1.3911 -9.8557 18 6 2.0602 -3.5283 -9.8706 19 7 1.5483 -3.5735 -11.0801 20 14 2.3373 -5.1087 -8.9140 21 1 1.1230 -5.4264 -8.1205 22 1 2.6142 -6.2184 -9.8612 23 1 3.4952 -4.9375 -8.0000 24 6 2.8348 1.1050 -5.4599 25 6 3.2984 2.3156 -4.6186 26 1 3.6505 3.1491 -5.2264 27 6 2.1903 2.7260 -3.6424 28 6 2.0630 2.1842 1.3380 29 6 3.3730 1.7205 0.6979 30 1 -0.3633 0.5794 -0.8489 31 1 -0.3634 -1.0247 -0.0772 32 1 -0.3633 0.4455 0.9261 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.2868 1.3828 -1.5823 36 1 3.3712 0.2025 -2.5589 37 1 5.9508 0.5488 -4.7246 38 1 4.7222 -0.4328 -3.8813 39 1 4.7698 -1.5828 -6.0805 40 1 3.1326 -1.4545 -5.3939 41 1 3.0717 -3.0783 -7.5441 42 1 1.3148 -4.4275 -11.4763 43 1 2.3720 1.4362 -6.3895 44 1 2.1473 0.4788 -4.8911 45 1 1.2239 2.3949 -4.0226 46 1 2.1873 3.8095 -3.5235 47 1 1.8470 3.2524 1.3250 48 1 1.7143 1.6446 2.2186 49 1 3.8863 0.8758 1.1572 50 1 4.0188 2.4837 0.2636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569879509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:25 Heat of formation + Delta-G solvation = -28.242228 kcal Electronic energy + Delta-G solvation = -29849.300954 eV Core-core repulsion = 25877.455640 eV Total energy + Delta-G solvation = -3971.845314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12452 -39.66964 -38.23677 -37.15079 -35.74939 -33.92907 -32.28521 -31.93557 -31.56070 -30.92982 -27.67642 -26.54016 -25.41787 -24.43344 -23.57172 -22.83142 -21.82940 -21.29058 -20.03923 -19.36521 -18.95356 -18.26007 -17.13585 -16.68207 -16.05939 -15.92815 -15.60273 -15.20352 -15.01852 -14.66683 -14.59031 -14.33000 -14.11685 -13.84760 -13.32215 -13.22545 -13.09912 -12.90969 -12.79144 -12.72425 -12.50207 -12.30273 -11.98645 -11.93768 -11.91086 -11.70129 -11.50957 -11.43754 -11.26639 -11.14115 -10.91361 -10.76737 -10.72915 -10.60515 -10.41641 -9.98089 -9.90785 -9.56075 -8.88977 -8.62409 -8.19128 -8.09242 -6.31265 -3.82675 2.33837 2.64771 3.01150 3.05369 3.13950 3.25200 3.73129 3.84919 3.95272 4.09500 4.16147 4.24732 4.35984 4.40541 4.46132 4.57316 4.82674 4.85952 4.98276 4.99636 5.07930 5.10874 5.14990 5.18344 5.19065 5.23798 5.31042 5.42929 5.44268 5.52322 5.55452 5.59239 5.63691 5.64438 5.67931 5.68209 5.68700 5.75026 5.88634 5.96103 5.98687 6.00113 6.12723 6.30843 6.98738 7.04948 7.24356 7.58002 7.92265 8.14138 8.60057 8.95251 9.42229 9.83355 10.81941 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002659 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.487016 B =10527.487520 C =11240.584690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.565 3.435 5 O -0.534 6.534 6 N -0.608 5.608 7 C 0.104 3.896 8 C -0.106 4.106 9 H 0.103 0.897 10 C 0.041 3.959 11 N -0.490 5.490 12 C 0.034 3.966 13 C 0.454 3.546 14 O -0.558 6.558 15 N -0.593 5.593 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.048 3.952 25 C -0.095 4.095 26 H 0.109 0.891 27 C 0.113 3.887 28 C -0.143 4.143 29 C -0.165 4.165 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.369 0.631 42 H 0.273 0.727 43 H 0.103 0.897 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 6.385 26.328 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.154 4.154 4 C 0.354 3.646 5 O -0.410 6.410 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.126 4.126 9 H 0.121 0.879 10 C -0.087 4.087 11 N -0.213 5.213 12 C -0.098 4.098 13 C 0.239 3.761 14 O -0.439 6.439 15 N -0.232 5.232 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.080 4.080 25 C -0.114 4.114 26 H 0.128 0.872 27 C -0.010 4.010 28 C -0.181 4.181 29 C -0.202 4.202 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.202 0.798 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.749 7.603 25.333 27.066 hybrid contribution -0.196 -1.982 1.179 2.315 sum 5.553 5.621 26.512 27.664 Atomic orbital electron populations 1.21730 0.94781 1.01755 1.02617 1.20991 0.96671 0.91130 1.02694 1.21435 1.03676 0.97630 0.92691 1.19168 0.81275 0.81857 0.82345 1.90710 1.30233 1.36705 1.83387 1.48159 1.28151 1.47510 1.10386 1.22314 0.86094 0.94686 0.98779 1.22949 0.97897 0.97841 0.93869 0.87926 1.22998 0.99638 0.95695 0.90369 1.64474 1.15632 1.11991 1.29225 1.22100 1.00913 0.90123 0.96639 1.19588 0.84295 0.84355 0.87843 1.90553 1.56788 1.33161 1.63387 1.42209 1.58084 1.06335 1.16620 1.19421 1.37148 0.96641 0.90008 0.86277 1.25034 0.97354 0.97847 0.95955 1.69623 1.42125 1.26465 1.13986 0.86681 0.78727 0.83891 0.80137 1.19699 1.20178 1.19510 1.23328 0.91304 0.93168 1.00191 1.22781 0.93748 0.99308 0.95606 0.87239 1.21710 0.98992 0.98062 0.82237 1.22995 0.99731 1.01114 0.94231 1.23155 0.90256 1.03803 1.02997 0.92438 0.92328 0.92361 0.91271 0.90763 0.90430 0.91501 0.89880 0.93434 0.89155 0.93209 0.79801 0.91633 0.87924 0.94048 0.90926 0.91155 0.88137 0.87803 0.87700 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.84 37.16 0.37 -0.97 16 2 C -0.08 -0.60 5.81 -26.73 -0.16 -0.75 16 3 C -0.15 -1.31 1.21 -155.66 -0.19 -1.50 16 4 C 0.57 6.79 6.31 -10.99 -0.07 6.72 16 5 O -0.53 -8.44 17.30 5.56 0.10 -8.34 16 6 N -0.61 -6.52 3.31 -172.70 -0.57 -7.09 16 7 C 0.10 0.87 5.87 -3.40 -0.02 0.85 16 8 C -0.11 -0.94 4.17 -88.15 -0.37 -1.31 16 9 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.04 0.43 6.21 -2.72 -0.02 0.41 16 11 N -0.49 -7.24 4.90 -232.09 -1.14 -8.38 16 12 C 0.03 0.55 5.19 -4.98 -0.03 0.52 16 13 C 0.45 10.10 7.61 -10.99 -0.08 10.01 16 14 O -0.56 -14.65 14.63 5.54 0.08 -14.57 16 15 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 16 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 17 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 20 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 24 C 0.05 0.68 5.08 -2.09 -0.01 0.67 16 25 C -0.09 -1.04 4.01 -88.37 -0.35 -1.39 16 26 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 27 C 0.11 1.27 6.27 -3.86 -0.02 1.24 16 28 C -0.14 -1.07 9.87 -26.73 -0.26 -1.33 16 29 C -0.17 -1.04 8.43 -26.73 -0.23 -1.26 16 30 H 0.06 0.64 7.59 -51.93 -0.39 0.25 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.55 7.92 -51.93 -0.41 0.13 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.08 0.51 6.17 -51.93 -0.32 0.19 16 36 H 0.07 0.57 6.97 -51.93 -0.36 0.21 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.43 6.76 -51.93 -0.35 0.08 16 39 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 40 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 41 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.10 1.80 7.09 -51.93 -0.37 1.43 16 44 H 0.04 0.59 7.57 -51.93 -0.39 0.20 16 45 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.62 7.76 -51.93 -0.40 0.21 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -34.38 393.53 -9.53 -43.92 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.25 Total: 8.72 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.69 Total: 4.26 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.99 Total: -54.41 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.18 Total: -22.91 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.38 -9.53 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569879509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.675 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds