Wall clock time and date at job start Tue Mar 31 2020 19:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47462 * 2 1 4 4 C 1.50699 * 115.54843 * 294.72896 * 3 2 1 5 5 O 1.21278 * 120.00029 * 100.56610 * 4 3 2 6 6 N 1.34771 * 120.00349 * 280.56047 * 4 3 2 7 7 C 1.46616 * 125.30012 * 355.00932 * 6 4 3 8 8 C 1.54101 * 107.07502 * 197.87887 * 7 6 4 9 9 H 1.08998 * 112.91896 * 97.39441 * 8 7 6 10 10 C 1.54144 * 108.36326 * 223.21809 * 8 7 6 11 11 N 1.47827 * 107.25820 * 110.55685 * 10 8 7 12 12 C 1.46903 * 111.00300 * 214.49836 * 11 10 8 13 13 C 1.50695 * 109.47493 * 189.99889 * 12 11 10 14 14 O 1.21296 * 120.00107 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00041 * 179.97438 * 13 12 11 16 16 C 1.37103 * 120.00250 * 179.97438 * 15 13 12 17 17 H 1.08010 * 119.99474 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00439 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00218 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99984 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46956 * 89.99587 * 20 18 16 22 22 H 1.48497 * 109.47017 * 209.99851 * 20 18 16 23 23 H 1.48504 * 109.46853 * 329.99989 * 20 18 16 24 24 C 1.48558 * 105.86594 * 335.03941 * 11 10 8 25 25 C 1.54546 * 103.17339 * 39.39219 * 24 11 10 26 26 H 1.08998 * 113.10216 * 83.98860 * 25 24 11 27 27 C 1.46572 * 125.30778 * 175.00560 * 6 4 3 28 28 C 1.53002 * 117.51662 * 80.42754 * 3 2 1 29 29 C 1.52998 * 60.00018 * 107.48284 * 28 3 2 30 30 H 1.09005 * 109.46715 * 55.68568 * 1 2 3 31 31 H 1.08992 * 109.47363 * 175.69029 * 1 2 3 32 32 H 1.09001 * 109.46979 * 295.69217 * 1 2 3 33 33 H 1.08997 * 109.47075 * 240.00084 * 2 1 3 34 34 H 1.08996 * 109.47479 * 120.00379 * 2 1 3 35 35 H 1.08997 * 109.91455 * 317.23298 * 7 6 4 36 36 H 1.08994 * 109.91639 * 78.32600 * 7 6 4 37 37 H 1.09000 * 109.88415 * 229.97097 * 10 8 7 38 38 H 1.09004 * 109.88286 * 350.97960 * 10 8 7 39 39 H 1.09001 * 109.46725 * 309.99857 * 12 11 10 40 40 H 1.08997 * 109.47090 * 69.99388 * 12 11 10 41 41 H 0.96994 * 120.00429 * 0.02562 * 15 13 12 42 42 H 0.96999 * 119.99632 * 180.02562 * 19 18 16 43 43 H 1.08995 * 110.67579 * 157.84794 * 24 11 10 44 44 H 1.09006 * 110.67215 * 280.82673 * 24 11 10 45 45 H 1.09003 * 109.73419 * 297.68495 * 27 6 4 46 46 H 1.08998 * 109.73190 * 58.32709 * 27 6 4 47 47 H 1.08996 * 117.49637 * 214.97026 * 28 3 2 48 48 H 1.08997 * 117.49856 * 359.97438 * 28 3 2 49 49 H 1.08999 * 117.50085 * 252.51465 * 29 28 3 50 50 H 1.09006 * 117.50353 * 107.48482 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7205 2.2449 -1.2350 5 8 0.7985 3.0326 -1.2245 6 7 2.4594 2.0872 -2.3510 7 6 3.6577 1.2497 -2.4624 8 6 4.4152 1.7092 -3.7233 9 1 5.2251 2.4043 -3.5022 10 6 4.8909 0.4576 -4.4871 11 7 4.1012 0.3784 -5.7342 12 6 3.8372 -1.0190 -6.1024 13 6 3.2513 -1.0709 -7.4898 14 8 3.0717 -0.0448 -8.1112 15 7 2.9278 -2.2576 -8.0407 16 6 2.3942 -2.3049 -9.3028 17 1 2.2336 -1.3911 -9.8557 18 6 2.0602 -3.5283 -9.8706 19 7 1.5483 -3.5735 -11.0801 20 14 2.3373 -5.1087 -8.9140 21 1 1.1230 -5.4264 -8.1205 22 1 2.6142 -6.2184 -9.8612 23 1 3.4952 -4.9375 -8.0000 24 6 2.8348 1.1050 -5.4599 25 6 3.2984 2.3156 -4.6186 26 1 3.6505 3.1491 -5.2264 27 6 2.1903 2.7260 -3.6424 28 6 2.0630 2.1842 1.3380 29 6 3.3730 1.7205 0.6979 30 1 -0.3633 0.5794 -0.8489 31 1 -0.3634 -1.0247 -0.0772 32 1 -0.3633 0.4455 0.9261 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.2868 1.3828 -1.5823 36 1 3.3712 0.2025 -2.5589 37 1 5.9508 0.5488 -4.7246 38 1 4.7222 -0.4328 -3.8813 39 1 4.7698 -1.5828 -6.0805 40 1 3.1326 -1.4545 -5.3939 41 1 3.0717 -3.0783 -7.5441 42 1 1.3148 -4.4275 -11.4763 43 1 2.3720 1.4362 -6.3895 44 1 2.1473 0.4788 -4.8911 45 1 1.2239 2.3949 -4.0226 46 1 2.1873 3.8095 -3.5235 47 1 1.8470 3.2524 1.3250 48 1 1.7143 1.6446 2.2186 49 1 3.8863 0.8758 1.1572 50 1 4.0188 2.4837 0.2636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569879509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:24 Heat of formation + Delta-G solvation = -53.987275 kcal Electronic energy + Delta-G solvation = -29850.417343 eV Core-core repulsion = 25877.455640 eV Total energy + Delta-G solvation = -3972.961703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98758 -40.70261 -39.81969 -37.92825 -36.85836 -35.89436 -33.76231 -32.89104 -32.83758 -31.78885 -29.02091 -27.47145 -26.65309 -25.61324 -24.54271 -23.34493 -22.70085 -22.24073 -21.23684 -20.90239 -20.19935 -19.68476 -18.07089 -17.61844 -17.36002 -16.87323 -16.78024 -16.54041 -16.20249 -16.02237 -15.49511 -15.25903 -15.07621 -14.89535 -14.70209 -14.49775 -14.35336 -14.05831 -13.86493 -13.75086 -13.68584 -13.32278 -13.06000 -13.04821 -12.74010 -12.64373 -12.43438 -12.41484 -12.39911 -12.13443 -12.07809 -11.97560 -11.80825 -11.66822 -11.48225 -11.36279 -11.00217 -10.74448 -10.38922 -10.23448 -9.76814 -9.26739 -8.40642 -6.01471 1.29639 1.35719 1.44674 1.47241 1.85860 1.98170 2.23498 2.65491 2.69274 3.10698 3.15972 3.27296 3.43594 3.55712 3.64188 3.78357 3.85951 3.98580 4.09086 4.10464 4.15142 4.25202 4.35003 4.36661 4.40443 4.47512 4.49544 4.57563 4.62645 4.63566 4.70990 4.73355 4.75476 4.89934 4.95542 4.98743 5.02923 5.05120 5.08357 5.13392 5.20358 5.27355 5.28100 5.32541 5.53492 5.86683 5.94053 6.07536 6.42538 6.61004 6.89875 7.04743 7.41349 7.99648 8.77257 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002659 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.487016 B =10527.487520 C =11240.584690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 C -0.166 4.166 4 C 0.558 3.442 5 O -0.587 6.587 6 N -0.607 5.607 7 C 0.104 3.896 8 C -0.093 4.093 9 H 0.128 0.872 10 C 0.043 3.957 11 N -0.516 5.516 12 C 0.047 3.953 13 C 0.450 3.550 14 O -0.608 6.608 15 N -0.594 5.594 16 C -0.326 4.326 17 H 0.053 0.947 18 C -0.018 4.018 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.228 1.228 24 C 0.051 3.949 25 C -0.088 4.088 26 H 0.109 0.891 27 C 0.115 3.885 28 C -0.151 4.151 29 C -0.138 4.138 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.389 0.611 42 H 0.278 0.722 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.122 0.878 49 H 0.135 0.865 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 3.645 30.891 32.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.169 4.169 4 C 0.348 3.652 5 O -0.467 6.467 6 N -0.340 5.340 7 C -0.018 4.018 8 C -0.112 4.112 9 H 0.146 0.854 10 C -0.084 4.084 11 N -0.241 5.241 12 C -0.085 4.085 13 C 0.238 3.762 14 O -0.491 6.491 15 N -0.236 5.236 16 C -0.456 4.456 17 H 0.071 0.929 18 C -0.216 4.216 19 N -0.578 5.578 20 Si 0.785 3.215 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.151 1.151 24 C -0.077 4.077 25 C -0.107 4.107 26 H 0.127 0.873 27 C -0.009 4.009 28 C -0.188 4.188 29 C -0.175 4.175 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.140 0.860 49 H 0.153 0.847 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.057 4.861 29.923 31.639 hybrid contribution -1.273 -0.946 -0.340 1.622 sum 7.784 3.915 29.583 30.839 Atomic orbital electron populations 1.21732 0.96340 1.01691 1.01171 1.21012 0.95261 0.90604 1.04073 1.21407 1.06469 0.97681 0.91346 1.19903 0.80455 0.81423 0.83450 1.90677 1.32481 1.39136 1.84391 1.48264 1.28766 1.47335 1.09601 1.22507 0.85218 0.94416 0.99647 1.22995 0.97529 0.97599 0.93103 0.85356 1.23114 0.99434 0.97219 0.88643 1.64378 1.15821 1.11284 1.32577 1.22021 1.02564 0.91749 0.92128 1.20968 0.82224 0.83031 0.89969 1.90541 1.58157 1.34987 1.65446 1.42039 1.58515 1.07833 1.15237 1.18981 1.39479 0.94990 0.92114 0.92903 1.26141 0.96030 1.02406 0.97008 1.69815 1.43348 1.28104 1.16510 0.85357 0.80506 0.76674 0.78930 1.18334 1.20074 1.15075 1.23116 0.91496 0.94662 0.98376 1.22632 0.94615 0.98096 0.95381 0.87277 1.21578 0.98196 0.98002 0.83090 1.23070 1.01242 1.00231 0.94283 1.23300 0.89113 1.04307 1.00745 0.95872 0.91308 0.92178 0.91197 0.87861 0.87534 0.90846 0.88359 0.90858 0.85697 0.90394 0.77528 0.91211 0.92714 0.94279 0.93256 0.91428 0.90073 0.86002 0.84737 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.84 71.98 0.71 -1.82 16 2 C -0.07 -0.89 5.81 30.59 0.18 -0.71 16 3 C -0.17 -2.47 1.21 -52.93 -0.06 -2.54 16 4 C 0.56 13.10 6.31 87.66 0.55 13.65 16 5 O -0.59 -19.40 17.30 -3.02 -0.05 -19.45 16 6 N -0.61 -12.25 3.31 -818.68 -2.71 -14.96 16 7 C 0.10 1.32 5.87 86.73 0.51 1.83 16 8 C -0.09 -1.30 4.17 -9.19 -0.04 -1.34 16 9 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.04 0.69 6.21 86.51 0.54 1.22 16 11 N -0.52 -14.25 4.90 -888.21 -4.35 -18.61 16 12 C 0.05 1.36 5.19 85.55 0.44 1.81 16 13 C 0.45 20.18 7.61 87.66 0.67 20.84 16 14 O -0.61 -33.74 14.63 -3.08 -0.05 -33.79 16 15 N -0.59 -27.87 5.09 -306.98 -1.56 -29.43 16 16 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16 17 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 18 C -0.02 -0.98 5.50 84.92 0.47 -0.52 16 19 N -0.94 -56.93 13.96 21.66 0.30 -56.63 16 20 Si 0.97 38.54 27.74 68.60 1.90 40.44 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 24 C 0.05 1.49 5.08 86.51 0.44 1.93 16 25 C -0.09 -1.87 4.01 -9.33 -0.04 -1.90 16 26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 27 C 0.11 2.65 6.27 86.46 0.54 3.19 16 28 C -0.15 -1.90 9.87 30.59 0.30 -1.60 16 29 C -0.14 -1.13 8.43 30.59 0.26 -0.87 16 30 H 0.02 0.52 7.59 -2.38 -0.02 0.51 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 34 H 0.10 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.11 0.80 6.17 -2.39 -0.01 0.78 16 36 H 0.07 0.90 6.97 -2.39 -0.02 0.88 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 0.86 6.76 -2.38 -0.02 0.84 16 39 H 0.13 2.84 8.08 -2.39 -0.02 2.82 16 40 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 41 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 42 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.05 2.09 7.09 -2.39 -0.02 2.08 16 44 H 0.04 1.12 7.57 -2.38 -0.02 1.11 16 45 H 0.05 1.35 7.76 -2.39 -0.02 1.33 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.10 0.82 7.76 -2.38 -0.02 0.80 16 Total: -1.00 -85.60 393.53 0.15 -85.45 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.35 Total: 32.14 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.32 Total: 14.83 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -8.32 Total: -119.63 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.10 Total: -53.24 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.44 kcal Total: -85.60 0.15 -85.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569879509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.464 kcal (2) G-P(sol) polarization free energy of solvation -85.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds