Wall clock time and date at job start Tue Mar 31 2020 19:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30173 * 126.80244 * 2 1 4 4 O 1.20926 * 111.60317 * 180.25306 * 3 2 1 5 5 C 1.34042 * 111.56651 * 359.74322 * 4 3 2 6 6 C 1.50700 * 126.77692 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.44687 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00908 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46456 * 359.97438 * 8 7 5 10 10 C 1.52997 * 109.47238 * 119.99787 * 8 7 5 11 11 C 1.52992 * 109.47161 * 240.00322 * 8 7 5 12 12 C 1.50697 * 109.47463 * 174.99759 * 11 8 7 13 13 O 1.21287 * 119.99710 * 359.97438 * 12 11 8 14 14 N 1.34781 * 120.00631 * 179.97438 * 12 11 8 15 15 C 1.46497 * 120.00036 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46689 * 180.02562 * 15 14 12 17 17 H 1.08994 * 112.84580 * 314.66531 * 16 15 14 18 18 C 1.53781 * 113.61529 * 85.86300 * 16 15 14 19 19 C 1.53960 * 87.01771 * 139.94979 * 18 16 15 20 20 H 1.09000 * 113.53738 * 89.18982 * 19 18 16 21 21 N 1.46503 * 113.74123 * 220.05520 * 19 18 16 22 22 C 1.36930 * 120.00091 * 252.59559 * 21 19 18 23 23 H 1.08003 * 119.99824 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00134 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00130 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00145 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47480 * 89.99740 * 26 24 22 28 28 H 1.48497 * 109.46997 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46801 * 329.99622 * 26 24 22 30 30 C 1.53778 * 87.11167 * 334.63420 * 19 18 16 31 31 H 1.09003 * 109.47292 * 270.16608 * 1 2 3 32 32 H 1.09004 * 109.47271 * 30.16626 * 1 2 3 33 33 H 1.09005 * 109.47375 * 150.17042 * 1 2 3 34 34 H 1.09010 * 109.47050 * 270.00327 * 6 5 4 35 35 H 1.09001 * 109.47300 * 29.99729 * 6 5 4 36 36 H 1.08997 * 109.47493 * 150.00141 * 6 5 4 37 37 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 10 8 7 39 39 H 1.09004 * 109.47261 * 300.00295 * 10 8 7 40 40 H 1.09002 * 109.46906 * 294.99838 * 11 8 7 41 41 H 1.09006 * 109.47717 * 54.99213 * 11 8 7 42 42 H 0.96996 * 119.99210 * 0.02562 * 14 12 11 43 43 H 1.09000 * 109.46902 * 300.00164 * 15 14 12 44 44 H 1.08998 * 109.46992 * 60.00412 * 15 14 12 45 45 H 1.08996 * 113.61392 * 254.52648 * 18 16 15 46 46 H 1.09005 * 113.61193 * 25.43132 * 18 16 15 47 47 H 0.97003 * 119.99711 * 72.60306 * 21 19 18 48 48 H 0.97004 * 120.00575 * 179.97438 * 25 24 22 49 49 H 1.09002 * 113.62204 * 270.81379 * 30 19 18 50 50 H 1.09007 * 113.61362 * 139.90869 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6069 -0.0034 6 6 4.9021 -1.3697 -0.0077 7 6 2.3539 -1.1321 0.0028 8 6 1.9589 -2.5864 0.0063 9 1 2.8555 -3.2063 0.0026 10 6 1.1348 -2.8881 1.2596 11 6 1.1238 -2.8911 -1.2389 12 6 0.8325 -4.3684 -1.2993 13 8 1.2521 -5.1052 -0.4321 14 7 0.1058 -4.8710 -2.3171 15 6 -0.1778 -6.3071 -2.3755 16 6 -1.0129 -6.6118 -3.6208 17 1 -1.8336 -5.9087 -3.7623 18 6 -0.1704 -6.8383 -4.8872 19 6 -1.1497 -7.9733 -5.2384 20 1 -2.0076 -7.6424 -5.8237 21 7 -0.5002 -9.1595 -5.8016 22 6 -0.6343 -9.4460 -7.1339 23 1 -1.2186 -8.7971 -7.7695 24 6 -0.0193 -10.5703 -7.6674 25 7 0.6922 -11.3612 -6.8927 26 14 -0.2017 -10.9606 -9.4851 27 1 0.8941 -10.3065 -10.2443 28 1 -0.1336 -12.4305 -9.6849 29 1 -1.5108 -10.4552 -9.9709 30 6 -1.4379 -8.0855 -3.7320 31 1 -0.3634 0.0030 1.0277 32 1 -0.3634 0.8885 -0.5164 33 1 -0.3634 -0.8915 -0.5112 34 1 5.2111 -1.5552 -1.0365 35 1 5.6681 -0.7852 0.5018 36 1 4.7672 -2.3203 0.5082 37 1 0.8495 -3.9401 1.2623 38 1 0.2383 -2.2681 1.2627 39 1 1.7299 -2.6710 2.1467 40 1 0.1860 -2.3375 -1.1917 41 1 1.6771 -2.5931 -2.1295 42 1 -0.2294 -4.2818 -3.0109 43 1 0.7599 -6.8609 -2.4227 44 1 -0.7311 -6.6047 -1.4848 45 1 -0.2000 -6.0028 -5.5866 46 1 0.8428 -7.1838 -4.6816 47 1 0.0248 -9.7421 -5.2307 48 1 1.1217 -12.1471 -7.2654 49 1 -0.7719 -8.7726 -3.2099 50 1 -2.4894 -8.2554 -3.5001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656139385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:31 Heat of formation + Delta-G solvation = 33.712371 kcal Electronic energy + Delta-G solvation = -28268.197375 eV Core-core repulsion = 24299.038613 eV Total energy + Delta-G solvation = -3969.158761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.23750 -40.10531 -38.59887 -36.86273 -34.74000 -34.11351 -33.32032 -32.77990 -30.39286 -29.18929 -28.82145 -27.92963 -26.70779 -25.12375 -24.25595 -23.70175 -21.36486 -21.02962 -20.49604 -20.26385 -19.06680 -17.96476 -17.33957 -17.06628 -16.95592 -16.17599 -15.78318 -15.25292 -14.87758 -14.65013 -14.56160 -13.98353 -13.92636 -13.73725 -13.61068 -13.49056 -13.45756 -13.25134 -13.18275 -12.90381 -12.82988 -12.55234 -11.96245 -11.87184 -11.74352 -11.62464 -11.60424 -11.39219 -11.25424 -10.88060 -10.85381 -10.55410 -10.26798 -10.15463 -10.14988 -9.86297 -9.83202 -9.51474 -9.41696 -9.05515 -8.89208 -6.99001 -5.80697 -3.09675 1.13757 1.86145 2.52569 2.77437 3.10502 3.40825 3.45974 3.47773 3.83853 4.10415 4.28447 4.42995 4.56012 4.64159 4.71652 4.80601 4.93217 4.95657 4.97336 5.01637 5.04475 5.09108 5.18799 5.20365 5.26074 5.33639 5.38047 5.43983 5.47539 5.48012 5.61619 5.69646 5.77805 5.78977 5.82813 5.90296 5.94137 6.06320 6.09844 6.23991 6.28962 6.32918 6.43127 6.55911 6.79608 7.08053 7.41348 7.66554 7.97318 8.13091 8.37777 9.48848 10.07058 10.41173 11.41600 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.001755 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.588553 B =15951.808305 C =16287.305088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.026 3.974 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.194 4.194 8 C 0.006 3.994 9 H 0.092 0.908 10 C -0.151 4.151 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.725 5.725 15 C 0.132 3.868 16 C -0.127 4.127 17 H 0.087 0.913 18 C -0.161 4.161 19 C 0.166 3.834 20 H 0.075 0.925 21 N -0.713 5.713 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.142 4.142 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.400 0.600 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.080 0.920 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 23.138 16.461 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.198 4.198 8 C -0.013 4.013 9 H 0.110 0.890 10 C -0.208 4.208 11 C -0.179 4.179 12 C 0.297 3.703 13 O -0.417 6.417 14 N -0.376 5.376 15 C 0.009 3.991 16 C -0.147 4.147 17 H 0.106 0.894 18 C -0.202 4.202 19 C 0.054 3.946 20 H 0.093 0.907 21 N -0.350 5.350 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.182 4.182 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.234 0.766 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.796 23.849 16.875 29.270 hybrid contribution -0.085 -0.793 -1.216 1.454 sum 1.711 23.056 15.659 27.923 Atomic orbital electron populations 1.20322 0.86181 1.03776 1.03513 1.23391 0.98814 0.88434 1.02657 1.73842 0.89324 1.23990 1.20327 1.84804 1.21611 1.22553 1.67986 1.24292 0.98295 0.83748 1.02838 1.20387 0.89970 0.98706 1.04333 1.20970 0.91542 0.97289 1.09971 1.19145 0.99558 0.87941 0.94664 0.88979 1.21974 0.99255 1.03660 0.95933 1.21808 1.02378 0.93473 1.00212 1.20532 0.77968 0.90293 0.81485 1.90682 1.51652 1.60978 1.38374 1.46089 1.54781 1.10091 1.26671 1.21434 0.99704 0.79878 0.98116 1.22637 0.98854 0.98444 0.94716 0.89439 1.23974 1.00092 1.00933 0.95237 1.21548 0.94070 0.88068 0.90953 0.90718 1.42410 1.59110 1.25888 1.07625 1.19297 1.26332 1.06415 0.85531 0.91106 1.24776 1.00371 0.97779 0.98034 1.69657 1.37492 1.16401 1.34420 0.86186 0.77639 0.77280 0.85051 1.21700 1.21750 1.20741 1.23444 1.00771 0.94024 0.99964 0.90072 0.90483 0.89816 0.89227 0.89788 0.88809 0.89783 0.92950 0.92785 0.88640 0.88736 0.76619 0.91236 0.91789 0.92810 0.90387 0.78064 0.93433 0.90111 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.13 36.00 0.33 -0.19 16 2 C 0.03 0.24 7.20 -82.10 -0.59 -0.35 16 3 N -0.37 -4.07 12.07 33.42 0.40 -3.67 16 4 O 0.10 0.96 11.20 17.17 0.19 1.15 16 5 C -0.03 -0.23 7.49 -35.30 -0.26 -0.50 16 6 C -0.08 -0.37 10.17 36.01 0.37 -0.01 16 7 C -0.19 -1.64 4.93 -104.42 -0.51 -2.16 16 8 C 0.01 0.05 2.33 -91.77 -0.21 -0.16 16 9 H 0.09 0.80 6.94 -51.93 -0.36 0.44 16 10 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 11 C -0.14 -1.04 5.02 -27.89 -0.14 -1.18 16 12 C 0.51 5.39 7.55 -10.98 -0.08 5.31 16 13 O -0.54 -7.59 13.97 5.55 0.08 -7.51 16 14 N -0.73 -7.16 5.56 -60.29 -0.33 -7.49 16 15 C 0.13 1.59 5.50 -4.04 -0.02 1.57 16 16 C -0.13 -1.59 3.75 -89.80 -0.34 -1.93 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.16 -2.55 7.45 -25.82 -0.19 -2.74 16 19 C 0.17 3.11 4.48 -67.02 -0.30 2.81 16 20 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 21 N -0.71 -17.49 5.41 -52.55 -0.28 -17.78 16 22 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 26 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C -0.14 -2.18 7.40 -25.92 -0.19 -2.37 16 31 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.42 5.35 -51.93 -0.28 0.14 16 34 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.41 7.39 -51.93 -0.38 0.02 16 37 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 38 H 0.05 0.38 6.75 -51.93 -0.35 0.03 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.55 5.52 -51.93 -0.29 0.27 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 2.99 8.47 -40.82 -0.35 2.65 16 43 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 47 H 0.39 10.10 7.92 -40.82 -0.32 9.77 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 50 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -33.15 402.62 -8.32 -41.47 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.07 Total: 8.00 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.07 Total: -10.14 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.51 Total: -56.12 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: 0.27 Total: -6.36 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.15 -8.32 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656139385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.181 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds