Wall clock time and date at job start Tue Mar 31 2020 19:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30173 * 126.80244 * 2 1 4 4 O 1.20926 * 111.60317 * 180.25306 * 3 2 1 5 5 C 1.34042 * 111.56651 * 359.74322 * 4 3 2 6 6 C 1.50700 * 126.77692 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.44687 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00908 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46456 * 359.97438 * 8 7 5 10 10 C 1.52997 * 109.47238 * 119.99787 * 8 7 5 11 11 C 1.52992 * 109.47161 * 240.00322 * 8 7 5 12 12 C 1.50697 * 109.47463 * 174.99759 * 11 8 7 13 13 O 1.21287 * 119.99710 * 359.97438 * 12 11 8 14 14 N 1.34781 * 120.00631 * 179.97438 * 12 11 8 15 15 C 1.46497 * 120.00036 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46689 * 180.02562 * 15 14 12 17 17 H 1.08994 * 112.84580 * 314.66531 * 16 15 14 18 18 C 1.53781 * 113.61529 * 85.86300 * 16 15 14 19 19 C 1.53960 * 87.01771 * 139.94979 * 18 16 15 20 20 H 1.09000 * 113.53738 * 89.18982 * 19 18 16 21 21 N 1.46503 * 113.74123 * 220.05520 * 19 18 16 22 22 C 1.36930 * 120.00091 * 252.59559 * 21 19 18 23 23 H 1.08003 * 119.99824 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00134 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00130 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00145 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47480 * 89.99740 * 26 24 22 28 28 H 1.48497 * 109.46997 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46801 * 329.99622 * 26 24 22 30 30 C 1.53778 * 87.11167 * 334.63420 * 19 18 16 31 31 H 1.09003 * 109.47292 * 270.16608 * 1 2 3 32 32 H 1.09004 * 109.47271 * 30.16626 * 1 2 3 33 33 H 1.09005 * 109.47375 * 150.17042 * 1 2 3 34 34 H 1.09010 * 109.47050 * 270.00327 * 6 5 4 35 35 H 1.09001 * 109.47300 * 29.99729 * 6 5 4 36 36 H 1.08997 * 109.47493 * 150.00141 * 6 5 4 37 37 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 10 8 7 39 39 H 1.09004 * 109.47261 * 300.00295 * 10 8 7 40 40 H 1.09002 * 109.46906 * 294.99838 * 11 8 7 41 41 H 1.09006 * 109.47717 * 54.99213 * 11 8 7 42 42 H 0.96996 * 119.99210 * 0.02562 * 14 12 11 43 43 H 1.09000 * 109.46902 * 300.00164 * 15 14 12 44 44 H 1.08998 * 109.46992 * 60.00412 * 15 14 12 45 45 H 1.08996 * 113.61392 * 254.52648 * 18 16 15 46 46 H 1.09005 * 113.61193 * 25.43132 * 18 16 15 47 47 H 0.97003 * 119.99711 * 72.60306 * 21 19 18 48 48 H 0.97004 * 120.00575 * 179.97438 * 25 24 22 49 49 H 1.09002 * 113.62204 * 270.81379 * 30 19 18 50 50 H 1.09007 * 113.61362 * 139.90869 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6069 -0.0034 6 6 4.9021 -1.3697 -0.0077 7 6 2.3539 -1.1321 0.0028 8 6 1.9589 -2.5864 0.0063 9 1 2.8555 -3.2063 0.0026 10 6 1.1348 -2.8881 1.2596 11 6 1.1238 -2.8911 -1.2389 12 6 0.8325 -4.3684 -1.2993 13 8 1.2521 -5.1052 -0.4321 14 7 0.1058 -4.8710 -2.3171 15 6 -0.1778 -6.3071 -2.3755 16 6 -1.0129 -6.6118 -3.6208 17 1 -1.8336 -5.9087 -3.7623 18 6 -0.1704 -6.8383 -4.8872 19 6 -1.1497 -7.9733 -5.2384 20 1 -2.0076 -7.6424 -5.8237 21 7 -0.5002 -9.1595 -5.8016 22 6 -0.6343 -9.4460 -7.1339 23 1 -1.2186 -8.7971 -7.7695 24 6 -0.0193 -10.5703 -7.6674 25 7 0.6922 -11.3612 -6.8927 26 14 -0.2017 -10.9606 -9.4851 27 1 0.8941 -10.3065 -10.2443 28 1 -0.1336 -12.4305 -9.6849 29 1 -1.5108 -10.4552 -9.9709 30 6 -1.4379 -8.0855 -3.7320 31 1 -0.3634 0.0030 1.0277 32 1 -0.3634 0.8885 -0.5164 33 1 -0.3634 -0.8915 -0.5112 34 1 5.2111 -1.5552 -1.0365 35 1 5.6681 -0.7852 0.5018 36 1 4.7672 -2.3203 0.5082 37 1 0.8495 -3.9401 1.2623 38 1 0.2383 -2.2681 1.2627 39 1 1.7299 -2.6710 2.1467 40 1 0.1860 -2.3375 -1.1917 41 1 1.6771 -2.5931 -2.1295 42 1 -0.2294 -4.2818 -3.0109 43 1 0.7599 -6.8609 -2.4227 44 1 -0.7311 -6.6047 -1.4848 45 1 -0.2000 -6.0028 -5.5866 46 1 0.8428 -7.1838 -4.6816 47 1 0.0248 -9.7421 -5.2307 48 1 1.1217 -12.1471 -7.2654 49 1 -0.7719 -8.7726 -3.2099 50 1 -2.4894 -8.2554 -3.5001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656139385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:30 Heat of formation + Delta-G solvation = 12.649824 kcal Electronic energy + Delta-G solvation = -28269.110715 eV Core-core repulsion = 24299.038613 eV Total energy + Delta-G solvation = -3970.072102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.90689 -40.99789 -39.84609 -37.57031 -35.99140 -34.96845 -34.72535 -33.39982 -32.19321 -29.87562 -29.63794 -28.45986 -27.75151 -26.43625 -25.77642 -24.73715 -22.50904 -21.95028 -21.18904 -21.03652 -20.37378 -19.03875 -18.65526 -18.07079 -17.70512 -17.12049 -16.71392 -16.48485 -16.18824 -15.77656 -15.36521 -15.24144 -14.99598 -14.72837 -14.44477 -14.30079 -14.17903 -13.94851 -13.83480 -13.72519 -13.42337 -13.39816 -13.21732 -13.15371 -13.01204 -12.89014 -12.64025 -12.35965 -12.25515 -12.24215 -12.19083 -12.06323 -11.55450 -11.53250 -11.47155 -11.07247 -10.82259 -10.79962 -10.65763 -10.06108 -9.97279 -8.96442 -7.93834 -5.21970 0.50009 1.22131 1.47843 1.49343 1.57720 1.71317 2.16493 2.31325 2.57380 3.24079 3.38141 3.54255 3.64271 3.72179 3.79118 3.83042 3.95696 4.02337 4.16620 4.26430 4.28454 4.37411 4.39923 4.44233 4.47796 4.58817 4.60776 4.66622 4.69094 4.74687 4.80623 4.83381 4.84948 4.95557 4.99979 5.01345 5.06574 5.10069 5.17343 5.21025 5.25084 5.33380 5.39313 5.43111 5.51795 5.58869 5.76495 6.28577 6.64805 7.31997 7.33976 7.34671 8.12943 8.34260 9.29616 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.001755 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.588553 B =15951.808305 C =16287.305088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.025 3.975 3 N -0.401 5.401 4 O 0.078 5.922 5 C -0.027 4.027 6 C -0.078 4.078 7 C -0.202 4.202 8 C 0.012 3.988 9 H 0.084 0.916 10 C -0.147 4.147 11 C -0.130 4.130 12 C 0.510 3.490 13 O -0.578 6.578 14 N -0.716 5.716 15 C 0.139 3.861 16 C -0.094 4.094 17 H 0.122 0.878 18 C -0.153 4.153 19 C 0.141 3.859 20 H 0.080 0.920 21 N -0.730 5.730 22 C -0.241 4.241 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.267 1.267 30 C -0.137 4.137 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.415 0.585 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.065 0.935 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 25.124 16.155 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 N -0.111 5.111 4 O 0.017 5.983 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.206 4.206 8 C -0.008 4.008 9 H 0.102 0.898 10 C -0.204 4.204 11 C -0.170 4.170 12 C 0.298 3.702 13 O -0.458 6.458 14 N -0.368 5.368 15 C 0.015 3.985 16 C -0.113 4.113 17 H 0.140 0.860 18 C -0.194 4.194 19 C 0.032 3.968 20 H 0.098 0.902 21 N -0.368 5.368 22 C -0.373 4.373 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.192 1.192 30 C -0.177 4.177 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.478 25.913 16.561 30.757 hybrid contribution 0.300 -1.361 -1.054 1.747 sum 0.779 24.552 15.507 29.050 Atomic orbital electron populations 1.20471 0.84407 1.04763 1.04374 1.23869 1.00028 0.88151 1.01315 1.73837 0.89838 1.25174 1.22255 1.84769 1.21517 1.23474 1.68535 1.24878 0.99548 0.83259 1.01375 1.20552 0.88916 0.98664 1.05332 1.20999 0.91644 0.97169 1.10758 1.19056 0.99338 0.87537 0.94844 0.89796 1.21913 0.99843 1.02558 0.96115 1.21799 1.03573 0.91187 1.00412 1.21040 0.77098 0.91331 0.80738 1.90681 1.53090 1.62177 1.39840 1.45955 1.54590 1.09235 1.27058 1.21172 0.98404 0.81122 0.97812 1.22460 0.98646 0.97180 0.93022 0.86041 1.23738 0.98526 0.99832 0.97263 1.22010 0.94780 0.87173 0.92828 0.90230 1.42638 1.59742 1.27583 1.06796 1.19729 1.24796 1.05839 0.86923 0.90294 1.25600 1.01169 0.98312 1.02221 1.69821 1.39329 1.17009 1.36116 0.85142 0.78038 0.76410 0.80203 1.21554 1.22482 1.19194 1.23326 1.01549 0.95910 0.96917 0.89217 0.90123 0.88166 0.88068 0.88456 0.88242 0.91722 0.91633 0.93022 0.86327 0.87350 0.74816 0.93759 0.91670 0.91371 0.92708 0.79678 0.94142 0.91587 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.13 71.23 0.65 -0.21 16 2 C 0.03 0.42 7.20 43.58 0.31 0.74 16 3 N -0.40 -8.59 12.07 -49.56 -0.60 -9.19 16 4 O 0.08 1.55 11.20 71.61 0.80 2.35 16 5 C -0.03 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.08 -0.65 10.17 71.24 0.72 0.07 16 7 C -0.20 -3.11 4.93 -19.73 -0.10 -3.21 16 8 C 0.01 0.17 2.33 -11.54 -0.03 0.14 16 9 H 0.08 1.37 6.94 -2.39 -0.02 1.36 16 10 C -0.15 -2.29 8.84 71.98 0.64 -1.65 16 11 C -0.13 -1.60 5.02 29.84 0.15 -1.45 16 12 C 0.51 9.76 7.55 87.66 0.66 10.43 16 13 O -0.58 -15.85 13.97 -3.05 -0.04 -15.89 16 14 N -0.72 -12.22 5.56 -463.05 -2.57 -14.79 16 15 C 0.14 3.11 5.50 86.38 0.48 3.58 16 16 C -0.09 -2.09 3.75 -10.26 -0.04 -2.13 16 17 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 18 C -0.15 -4.58 7.45 31.18 0.23 -4.35 16 19 C 0.14 5.16 4.48 45.58 0.20 5.36 16 20 H 0.08 2.81 8.10 -2.39 -0.02 2.80 16 21 N -0.73 -36.20 5.41 -320.16 -1.73 -37.93 16 22 C -0.24 -13.17 9.97 84.03 0.84 -12.33 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 25 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 26 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 C -0.14 -4.01 7.40 31.12 0.23 -3.78 16 31 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.66 5.35 -2.38 -0.01 0.64 16 34 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 0.74 7.39 -2.39 -0.02 0.72 16 37 H 0.06 1.30 5.95 -2.39 -0.01 1.28 16 38 H 0.06 0.82 6.75 -2.39 -0.02 0.80 16 39 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 40 H 0.12 0.92 5.52 -2.39 -0.01 0.91 16 41 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.42 4.60 8.47 -92.71 -0.79 3.81 16 43 H 0.04 1.24 7.87 -2.39 -0.02 1.22 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 1.92 7.92 -2.38 -0.02 1.90 16 47 H 0.37 20.09 7.92 -92.71 -0.73 19.35 16 48 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 50 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -73.71 402.62 3.22 -70.49 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.55 Total: 29.76 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.61 Total: -13.19 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.62 Total: -121.33 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.76 Total: -13.54 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.71 3.22 -70.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656139385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.144 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds