Wall clock time and date at job start Tue Mar 31 2020 19:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30173 * 126.79694 * 2 1 4 4 O 1.20926 * 111.60331 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56538 * 359.76199 * 4 3 2 6 6 C 1.50693 * 126.77813 * 180.28583 * 5 4 3 7 7 C 1.35450 * 106.44668 * 0.38009 * 5 4 3 8 8 C 1.50697 * 128.00702 * 179.91028 * 7 5 4 9 9 C 1.53003 * 109.47217 * 184.57023 * 8 7 5 10 10 C 1.52997 * 109.47326 * 304.57024 * 8 7 5 11 11 C 1.50700 * 109.47179 * 64.57332 * 8 7 5 12 12 O 1.21289 * 119.99932 * 0.39775 * 11 8 7 13 13 N 1.34776 * 120.00442 * 180.39878 * 11 8 7 14 14 C 1.46491 * 120.00443 * 179.97438 * 13 11 8 15 15 C 1.52994 * 109.47305 * 180.02562 * 14 13 11 16 16 H 1.09000 * 112.85509 * 43.80399 * 15 14 13 17 17 C 1.53787 * 113.61509 * 175.00342 * 15 14 13 18 18 C 1.53781 * 87.08424 * 139.98130 * 17 15 14 19 19 H 1.08994 * 113.61277 * 219.93620 * 18 17 15 20 20 N 1.46501 * 113.61540 * 89.11115 * 18 17 15 21 21 C 1.36939 * 119.99771 * 155.00181 * 20 18 17 22 22 H 1.08002 * 119.99919 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99912 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00038 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47395 * 89.99812 * 25 23 21 27 27 H 1.48507 * 109.47244 * 209.99441 * 25 23 21 28 28 H 1.48501 * 109.47353 * 329.99478 * 25 23 21 29 29 C 1.53783 * 113.61479 * 272.49767 * 15 14 13 30 30 H 1.08999 * 109.47677 * 263.89058 * 1 2 3 31 31 H 1.09002 * 109.47386 * 23.89455 * 1 2 3 32 32 H 1.09009 * 109.46606 * 143.89151 * 1 2 3 33 33 H 1.09006 * 109.47637 * 274.69181 * 6 5 4 34 34 H 1.09004 * 109.46967 * 34.68939 * 6 5 4 35 35 H 1.09000 * 109.47503 * 154.69274 * 6 5 4 36 36 H 1.09003 * 109.46901 * 64.72020 * 9 8 7 37 37 H 1.08997 * 109.47147 * 184.72286 * 9 8 7 38 38 H 1.09002 * 109.47241 * 304.72067 * 9 8 7 39 39 H 1.08995 * 109.47033 * 65.59672 * 10 8 7 40 40 H 1.09001 * 109.47039 * 185.59710 * 10 8 7 41 41 H 1.08995 * 109.46942 * 305.59819 * 10 8 7 42 42 H 0.97002 * 119.99429 * 0.02562 * 13 11 8 43 43 H 1.09002 * 109.47263 * 300.00621 * 14 13 11 44 44 H 1.09000 * 109.47370 * 59.99847 * 14 13 11 45 45 H 1.09000 * 113.61207 * 254.52962 * 17 15 14 46 46 H 1.08992 * 113.61557 * 25.34312 * 17 15 14 47 47 H 0.96994 * 120.00067 * 335.00151 * 20 18 17 48 48 H 0.97004 * 119.99678 * 180.02562 * 24 23 21 49 49 H 1.09002 * 113.61651 * 334.56697 * 29 15 14 50 50 H 1.09003 * 113.61619 * 105.46735 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 4.9022 -1.3693 0.0144 7 6 2.3540 -1.1320 0.0006 8 6 1.9592 -2.5863 0.0016 9 6 0.4385 -2.7021 -0.1211 10 6 2.6217 -3.2955 -1.1812 11 6 2.4096 -3.2282 1.2885 12 8 2.9873 -2.5678 2.1259 13 7 2.1705 -4.5362 1.5090 14 6 2.6088 -5.1603 2.7598 15 6 2.2172 -6.6393 2.7563 16 1 2.4226 -7.1294 1.8046 17 6 2.7396 -7.4177 3.9754 18 6 1.3826 -8.1409 3.9964 19 1 0.9885 -8.3006 5.0000 20 7 1.3503 -9.3521 3.1730 21 6 0.4611 -10.3528 3.4617 22 1 -0.2165 -10.2489 4.2962 23 6 0.4309 -11.5007 2.6818 24 7 1.2564 -11.6271 1.6645 25 14 -0.7825 -12.8654 3.0752 26 1 -2.0492 -12.6296 2.3369 27 1 -0.2073 -14.1722 2.6666 28 1 -1.0555 -12.8795 4.5349 29 6 0.8007 -6.9028 3.2939 30 1 -0.3634 -0.1094 1.0218 31 1 -0.3634 0.9396 -0.4163 32 1 -0.3633 -0.8303 -0.6057 33 1 5.2625 -1.4846 -1.0079 34 1 5.6407 -0.8222 0.6004 35 1 4.7435 -2.3529 0.4567 36 1 0.1215 -2.3134 -1.0889 37 1 0.1458 -3.7486 -0.0362 38 1 -0.0350 -2.1267 0.6744 39 1 3.7029 -3.2996 -1.0431 40 1 2.2589 -4.3217 -1.2391 41 1 2.3753 -2.7703 -2.1040 42 1 1.7088 -5.0644 0.8391 43 1 3.6914 -5.0716 2.8502 44 1 2.1317 -4.6597 3.6023 45 1 3.5801 -8.0731 3.7475 46 1 2.9160 -6.7919 4.8502 47 1 1.9586 -9.4453 2.4233 48 1 1.2349 -12.4292 1.1193 49 1 0.4456 -6.1364 3.9829 50 1 0.0759 -7.1425 2.5159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656219414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:12 Heat of formation + Delta-G solvation = 29.171536 kcal Electronic energy + Delta-G solvation = -29493.317765 eV Core-core repulsion = 25523.962098 eV Total energy + Delta-G solvation = -3969.355667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -45.93183 -41.30589 -39.99478 -37.47843 -36.02001 -35.06706 -34.85318 -33.36956 -31.96778 -30.31481 -28.83846 -28.59260 -27.62775 -26.41090 -25.75003 -24.85168 -23.59862 -22.69120 -21.35207 -20.68781 -19.68104 -19.30917 -18.73450 -18.09052 -17.43431 -17.11697 -16.68297 -16.46207 -15.88301 -15.75739 -15.44119 -15.18270 -15.05291 -14.77736 -14.61173 -14.42474 -14.25050 -13.96749 -13.77236 -13.59779 -13.45901 -13.30979 -13.24636 -13.20695 -12.91841 -12.89118 -12.76165 -12.59636 -12.43809 -12.17534 -12.15456 -12.03157 -11.58326 -11.49671 -11.44211 -11.00769 -10.90730 -10.81995 -10.55280 -10.07353 -10.01298 -8.97659 -7.94018 -5.21701 0.49555 1.17786 1.49726 1.50147 1.58649 1.62555 2.12869 2.30042 2.57068 3.17017 3.38820 3.49801 3.58795 3.66922 3.74762 3.82155 3.86625 3.94428 4.04946 4.18721 4.33174 4.35590 4.37791 4.44057 4.57178 4.59724 4.61988 4.69058 4.71231 4.74878 4.77467 4.81140 4.85766 4.92440 4.95347 4.96288 5.02410 5.07632 5.12238 5.14726 5.30041 5.31563 5.33854 5.38267 5.51389 5.58119 5.69048 6.30074 6.56462 7.23871 7.29228 7.35387 8.12650 8.35037 9.29142 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.002167 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.006601 B =12920.573481 C =13233.140797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.026 3.974 3 N -0.402 5.402 4 O 0.075 5.925 5 C -0.009 4.009 6 C -0.073 4.073 7 C -0.192 4.192 8 C 0.006 3.994 9 C -0.154 4.154 10 C -0.145 4.145 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.712 5.712 14 C 0.141 3.859 15 C -0.100 4.100 16 H 0.085 0.915 17 C -0.136 4.136 18 C 0.143 3.857 19 H 0.056 0.944 20 N -0.719 5.719 21 C -0.241 4.241 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.970 3.030 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.271 1.271 29 C -0.152 4.152 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.411 0.589 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.089 0.911 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 21.423 -6.756 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 N -0.113 5.113 4 O 0.015 5.985 5 C -0.072 4.072 6 C -0.130 4.130 7 C -0.196 4.196 8 C 0.003 3.997 9 C -0.211 4.211 10 C -0.202 4.202 11 C 0.306 3.694 12 O -0.453 6.453 13 N -0.363 5.363 14 C 0.018 3.982 15 C -0.119 4.119 16 H 0.103 0.897 17 C -0.175 4.175 18 C 0.033 3.967 19 H 0.075 0.925 20 N -0.357 5.357 21 C -0.373 4.373 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.196 1.196 29 C -0.193 4.193 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.248 0.752 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.121 0.879 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.107 0.893 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.450 23.073 -6.038 23.976 hybrid contribution -0.503 -1.814 -0.232 1.896 sum 1.947 21.260 -6.270 22.251 Atomic orbital electron populations 1.20847 0.84268 1.05494 1.04329 1.23891 1.00143 0.88104 1.01136 1.73800 0.89724 1.25046 1.22693 1.84730 1.21631 1.23377 1.68719 1.24657 0.99465 0.83127 0.99956 1.20525 0.89166 0.98249 1.05053 1.20492 0.91718 0.96089 1.11305 1.18990 0.99135 0.88024 0.93592 1.22377 0.90486 1.04170 1.04083 1.22038 1.01155 1.01183 0.95857 1.20774 0.78306 0.81866 0.88422 1.90697 1.43318 1.63459 1.47820 1.45952 1.59628 1.09714 1.21017 1.21271 0.99397 0.91427 0.86112 1.22482 0.97170 0.93359 0.98844 0.89679 1.23346 0.97482 0.98392 0.98295 1.21383 0.95826 0.85747 0.93770 0.92539 1.42278 1.42716 1.16088 1.34609 1.19647 1.11553 0.95947 1.10143 0.90715 1.25503 1.01740 1.00881 0.98472 1.69800 1.41686 1.29091 1.21246 0.85192 0.78395 0.78626 0.77865 1.21407 1.22376 1.19635 1.23698 0.95799 0.99321 1.00466 0.89829 0.90450 0.86375 0.87029 0.89210 0.89733 0.88604 0.90112 0.91390 0.91563 0.89691 0.89971 0.75200 0.91788 0.91858 0.92376 0.87944 0.79258 0.94023 0.89301 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 8.60 71.24 0.61 -0.76 16 2 C 0.03 0.58 7.25 43.58 0.32 0.90 16 3 N -0.40 -10.71 12.07 -49.55 -0.60 -11.31 16 4 O 0.08 1.92 11.20 71.61 0.80 2.72 16 5 C -0.01 -0.19 6.89 25.04 0.17 -0.01 16 6 C -0.07 -1.12 8.85 71.23 0.63 -0.49 16 7 C -0.19 -4.01 4.31 -19.74 -0.09 -4.10 16 8 C 0.01 0.11 0.63 -53.68 -0.03 0.07 16 9 C -0.15 -1.88 6.69 71.98 0.48 -1.39 16 10 C -0.15 -1.72 8.06 71.98 0.58 -1.14 16 11 C 0.52 11.33 5.63 87.66 0.49 11.83 16 12 O -0.57 -17.01 14.66 -3.06 -0.04 -17.06 16 13 N -0.71 -13.85 5.32 -463.08 -2.46 -16.31 16 14 C 0.14 3.16 5.51 86.38 0.48 3.64 16 15 C -0.10 -2.57 3.63 -10.27 -0.04 -2.60 16 16 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 17 C -0.14 -3.89 7.39 31.12 0.23 -3.66 16 18 C 0.14 5.18 4.56 45.52 0.21 5.39 16 19 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 20 N -0.72 -34.12 5.31 -320.44 -1.70 -35.83 16 21 C -0.24 -12.86 9.97 84.03 0.84 -12.03 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 25 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C -0.15 -4.48 7.43 31.12 0.23 -4.25 16 30 H 0.08 1.20 7.83 -2.39 -0.02 1.18 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.16 4.67 -2.38 -0.01 1.15 16 33 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.47 5.51 -2.39 -0.01 1.46 16 36 H 0.10 0.80 6.62 -2.39 -0.02 0.79 16 37 H 0.08 0.83 7.46 -2.39 -0.02 0.81 16 38 H 0.07 0.91 6.00 -2.39 -0.01 0.90 16 39 H 0.07 0.80 6.07 -2.39 -0.01 0.78 16 40 H 0.08 0.80 7.70 -2.39 -0.02 0.78 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.41 6.56 7.36 -92.71 -0.68 5.88 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.50 7.84 -2.39 -0.02 1.48 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 47 H 0.38 19.01 7.90 -92.71 -0.73 18.28 16 48 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.09 2.26 7.90 -2.39 -0.02 2.24 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.97 393.73 3.44 -67.53 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.44 Total: 32.48 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.58 Total: -12.23 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -4.48 Total: -120.18 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.76 Total: -14.34 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.97 3.44 -67.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656219414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.705 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds