Wall clock time and date at job start Tue Mar 31 2020 19:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46901 * 2 1 4 4 C 1.50701 * 110.43503 * 64.34418 * 3 2 1 5 5 O 1.21281 * 119.99864 * 232.34633 * 4 3 2 6 6 N 1.34777 * 120.00065 * 52.34115 * 4 3 2 7 7 C 1.46502 * 119.99717 * 184.25487 * 6 4 3 8 8 H 1.08995 * 115.55590 * 350.70093 * 7 6 4 9 9 C 1.53036 * 117.50169 * 136.39483 * 7 6 4 10 10 C 1.52819 * 117.49689 * 204.97095 * 7 6 4 11 11 C 1.53189 * 117.71001 * 144.89819 * 10 7 6 12 12 C 1.53348 * 108.76714 * 158.88867 * 11 10 7 13 13 N 1.46838 * 108.81796 * 51.31053 * 12 11 10 14 14 C 1.36940 * 120.38618 * 123.11522 * 13 12 11 15 15 H 1.08005 * 120.00026 * 320.77161 * 14 13 12 16 16 C 1.38806 * 120.00049 * 140.77077 * 14 13 12 17 17 N 1.31626 * 120.00219 * 358.06793 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 178.06667 * 16 14 13 19 19 H 1.48505 * 109.47179 * 90.00118 * 18 16 14 20 20 H 1.48501 * 109.47144 * 209.99977 * 18 16 14 21 21 H 1.48498 * 109.47081 * 330.00252 * 18 16 14 22 22 C 1.46843 * 119.23437 * 303.09850 * 13 12 11 23 23 C 1.53179 * 117.71817 * 0.14414 * 10 7 6 24 24 C 1.54630 * 110.60026 * 186.95769 * 3 2 1 25 25 C 1.54662 * 101.68553 * 93.72245 * 24 3 2 26 26 N 1.46763 * 105.37760 * 25.76981 * 25 24 3 27 27 C 1.34411 * 111.30380 * 342.58592 * 26 25 24 28 28 O 1.21281 * 124.94623 * 180.69642 * 27 26 25 29 29 H 1.08996 * 109.47448 * 305.79321 * 1 2 3 30 30 H 1.09004 * 109.47361 * 65.79203 * 1 2 3 31 31 H 1.09005 * 109.46980 * 185.79293 * 1 2 3 32 32 H 1.09002 * 109.47228 * 240.00530 * 2 1 3 33 33 H 1.08992 * 109.47247 * 120.00346 * 2 1 3 34 34 H 0.96996 * 119.99876 * 4.24761 * 6 4 3 35 35 H 1.08994 * 117.50196 * 214.95809 * 9 7 6 36 36 H 1.09000 * 117.50081 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.58962 * 278.67650 * 11 10 7 38 38 H 1.08999 * 109.58801 * 39.10927 * 11 10 7 39 39 H 1.08997 * 109.58423 * 291.50887 * 12 11 10 40 40 H 1.09003 * 109.57714 * 171.10357 * 12 11 10 41 41 H 0.97001 * 120.00325 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58021 * 297.10552 * 22 13 12 43 43 H 1.09003 * 109.69823 * 176.76667 * 22 13 12 44 44 H 1.09007 * 109.58434 * 320.89617 * 23 10 7 45 45 H 1.09002 * 109.59175 * 81.32349 * 23 10 7 46 46 H 1.08998 * 110.97601 * 212.06108 * 24 3 2 47 47 H 1.09005 * 110.97108 * 335.78611 * 24 3 2 48 48 H 1.09003 * 110.39916 * 266.74589 * 25 24 3 49 49 H 1.08992 * 110.18237 * 144.68815 * 25 24 3 50 50 H 0.97003 * 124.34312 * 162.86211 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6388 2.1424 1.2729 5 8 1.0626 3.2084 1.2232 6 7 1.9204 1.5836 2.4667 7 6 1.4492 2.2165 3.7010 8 1 1.0180 3.2108 3.5847 9 6 0.8503 1.3079 4.7770 10 6 2.2305 1.9312 4.9830 11 6 2.3540 3.0624 6.0086 12 6 2.6789 2.4535 7.3780 13 7 3.8280 1.5506 7.2343 14 6 4.9570 1.7413 7.9856 15 1 5.3171 2.7418 8.1748 16 6 5.6384 0.6488 8.5039 17 7 5.1785 -0.5685 8.3055 18 14 7.2083 0.9059 9.4831 19 1 6.8742 1.0653 10.9212 20 1 8.0984 -0.2700 9.3091 21 1 7.9003 2.1267 8.9974 22 6 3.7524 0.4406 6.2760 23 6 3.4494 1.0087 4.8842 24 6 3.5759 1.4766 -0.1753 25 6 3.7127 1.6427 -1.7069 26 7 2.4718 2.2958 -2.1399 27 6 1.5124 2.1907 -1.2044 28 8 0.3874 2.6311 -1.3105 29 1 -0.3634 0.6010 0.8335 30 1 -0.3634 0.4214 -0.9373 31 1 -0.3633 -1.0225 0.1037 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.4350 0.7624 2.5085 35 1 0.0253 1.7046 5.3687 36 1 0.8066 0.2394 4.5662 37 1 3.1542 3.7400 5.7108 38 1 1.4124 3.6083 6.0657 39 1 1.8178 1.8935 7.7425 40 1 2.9249 3.2484 8.0822 41 1 5.6546 -1.3319 8.6680 42 1 2.9577 -0.2441 6.5720 43 1 4.7036 -0.0914 6.2542 44 1 3.2345 0.1920 4.1949 45 1 4.3087 1.5755 4.5258 46 1 4.0102 2.3250 0.3534 47 1 4.0271 0.5410 0.1553 48 1 3.8141 0.6694 -2.1871 49 1 4.5716 2.2713 -1.9417 50 1 2.3574 2.7423 -2.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661066554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:07 Heat of formation + Delta-G solvation = -30.330211 kcal Electronic energy + Delta-G solvation = -30358.417086 eV Core-core repulsion = 26386.481230 eV Total energy + Delta-G solvation = -3971.935856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50422 -39.47610 -38.10900 -36.68217 -35.42912 -34.58386 -32.87051 -31.41818 -30.49463 -30.11151 -28.28008 -27.67805 -24.35185 -23.36131 -23.29386 -22.42825 -22.36350 -21.33293 -20.51305 -19.47948 -18.22261 -17.80780 -16.99686 -16.61039 -16.14884 -15.89513 -15.29748 -14.96352 -14.79066 -14.52495 -14.19687 -14.05331 -13.71011 -13.53596 -13.45034 -13.31711 -13.23399 -12.96623 -12.66831 -12.62368 -12.29381 -12.23989 -11.97113 -11.70111 -11.50577 -11.42200 -11.33748 -11.13465 -10.90023 -10.81067 -10.51131 -10.28491 -10.06775 -9.93597 -9.82927 -9.71034 -9.56604 -9.39592 -9.31815 -8.48621 -8.43198 -6.48289 -5.81853 -3.37948 2.31144 2.50838 2.89712 3.24341 3.34345 3.41215 3.42547 3.80873 3.98058 4.19451 4.29702 4.45880 4.48681 4.61231 4.83287 4.93385 5.00912 5.06470 5.10943 5.16312 5.17401 5.31797 5.39570 5.41021 5.52670 5.53990 5.64826 5.65522 5.77229 5.89231 6.07045 6.09158 6.12220 6.13805 6.29989 6.44964 6.48616 6.57932 6.59500 6.66421 6.69839 6.72518 6.85942 7.02396 7.34620 7.48416 7.67475 7.78285 8.02381 8.20589 8.52684 9.23564 9.81513 10.44156 11.25199 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.002741 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.887069 B =10214.501865 C =10761.535094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.100 4.100 3 C -0.117 4.117 4 C 0.537 3.463 5 O -0.521 6.521 6 N -0.690 5.690 7 C 0.069 3.931 8 H 0.131 0.869 9 C -0.181 4.181 10 C -0.096 4.096 11 C -0.098 4.098 12 C 0.150 3.850 13 N -0.589 5.589 14 C -0.258 4.258 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.177 3.823 23 C -0.105 4.105 24 C -0.127 4.127 25 C 0.104 3.896 26 N -0.736 5.736 27 C 0.545 3.455 28 O -0.499 6.499 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -0.786 -19.645 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.138 4.138 3 C -0.124 4.124 4 C 0.321 3.679 5 O -0.396 6.396 6 N -0.340 5.340 7 C -0.036 4.036 8 H 0.148 0.852 9 C -0.220 4.220 10 C -0.097 4.097 11 C -0.138 4.138 12 C 0.023 3.977 13 N -0.312 5.312 14 C -0.388 4.388 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.051 3.949 23 C -0.144 4.144 24 C -0.165 4.165 25 C -0.021 4.021 26 N -0.393 5.393 27 C 0.328 3.672 28 O -0.371 6.371 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.237 0.763 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.364 0.008 -19.567 20.048 hybrid contribution 1.100 -0.269 0.183 1.147 sum -3.264 -0.261 -19.383 19.658 Atomic orbital electron populations 1.21844 0.94248 1.02035 1.03426 1.21471 0.97586 0.91125 1.03633 1.21733 0.98072 0.98519 0.94122 1.19617 0.79018 0.85318 0.83929 1.90765 1.40624 1.21342 1.86878 1.45283 1.55768 1.28365 1.04592 1.21883 1.03944 0.97907 0.79901 0.85182 1.23524 0.97625 0.99070 1.01779 1.21949 0.93021 0.99576 0.95176 1.21698 1.00131 0.95325 0.96640 1.20882 0.90656 0.93405 0.92735 1.43846 1.12328 1.31636 1.43376 1.19119 1.01955 0.92205 1.25486 0.92239 1.25387 0.99571 0.95840 0.97932 1.69926 1.39723 0.97474 1.47424 0.86314 0.82870 0.77196 0.80478 1.21242 1.21628 1.20378 1.20722 1.01059 0.89248 0.83854 1.21839 0.94858 0.96427 1.01312 1.22823 0.92336 1.05232 0.96082 1.22088 0.87242 0.98337 0.94408 1.46092 1.13780 1.58928 1.20480 1.19901 0.84699 0.78555 0.84030 1.90767 1.19052 1.47814 1.79495 0.92094 0.91831 0.91990 0.90357 0.90066 0.76321 0.88495 0.88905 0.91933 0.92920 0.96282 0.92695 0.93559 0.96449 0.89497 0.93937 0.92157 0.89080 0.87879 0.90562 0.89769 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.24 37.16 0.34 -1.29 16 2 C -0.10 -0.82 4.85 -26.73 -0.13 -0.95 16 3 C -0.12 -1.21 0.51 -155.67 -0.08 -1.29 16 4 C 0.54 7.49 5.36 -10.98 -0.06 7.43 16 5 O -0.52 -9.70 15.09 -12.06 -0.18 -9.88 16 6 N -0.69 -8.73 5.17 -53.88 -0.28 -9.01 16 7 C 0.07 1.01 6.15 -68.00 -0.42 0.59 16 8 H 0.13 2.08 7.39 -51.93 -0.38 1.70 16 9 C -0.18 -2.61 9.86 -26.80 -0.26 -2.87 16 10 C -0.10 -1.54 1.94 -154.49 -0.30 -1.84 16 11 C -0.10 -1.70 5.83 -26.45 -0.15 -1.85 16 12 C 0.15 3.09 6.51 -3.68 -0.02 3.07 16 13 N -0.59 -14.31 2.91 -172.26 -0.50 -14.81 16 14 C -0.26 -6.89 9.48 -15.06 -0.14 -7.04 16 15 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 16 C 0.01 0.33 5.19 -17.43 -0.09 0.23 16 17 N -0.90 -25.29 11.10 55.49 0.62 -24.68 16 18 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.18 3.98 5.29 -3.67 -0.02 3.96 16 23 C -0.10 -1.82 5.37 -26.46 -0.14 -1.97 16 24 C -0.13 -0.87 6.23 -25.00 -0.16 -1.03 16 25 C 0.10 0.55 7.79 -3.02 -0.02 0.52 16 26 N -0.74 -6.07 6.24 -59.11 -0.37 -6.44 16 27 C 0.54 6.79 6.19 -10.86 -0.07 6.72 16 28 O -0.50 -8.42 15.81 -12.06 -0.19 -8.62 16 29 H 0.06 0.77 7.23 -51.93 -0.38 0.39 16 30 H 0.06 0.75 6.73 -51.93 -0.35 0.40 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.55 7.21 -51.93 -0.37 0.18 16 34 H 0.40 4.25 6.22 -40.82 -0.25 4.00 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.20 6.24 -51.93 -0.32 1.87 16 44 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 47 H 0.10 0.46 7.91 -51.93 -0.41 0.05 16 48 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.41 2.72 8.96 -40.82 -0.37 2.35 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -34.48 389.11 -9.99 -44.47 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.20 Total: 4.63 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.73 Total: 2.41 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.53 Total: -54.93 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.37 Total: -18.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.48 -9.99 -44.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661066554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.141 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds