Wall clock time and date at job start Tue Mar 31 2020 19:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46901 * 2 1 4 4 C 1.50701 * 110.43503 * 64.34418 * 3 2 1 5 5 O 1.21281 * 119.99864 * 232.34633 * 4 3 2 6 6 N 1.34777 * 120.00065 * 52.34115 * 4 3 2 7 7 C 1.46502 * 119.99717 * 184.25487 * 6 4 3 8 8 H 1.08995 * 115.55590 * 350.70093 * 7 6 4 9 9 C 1.53036 * 117.50169 * 136.39483 * 7 6 4 10 10 C 1.52819 * 117.49689 * 204.97095 * 7 6 4 11 11 C 1.53189 * 117.71001 * 144.89819 * 10 7 6 12 12 C 1.53348 * 108.76714 * 158.88867 * 11 10 7 13 13 N 1.46838 * 108.81796 * 51.31053 * 12 11 10 14 14 C 1.36940 * 120.38618 * 123.11522 * 13 12 11 15 15 H 1.08005 * 120.00026 * 320.77161 * 14 13 12 16 16 C 1.38806 * 120.00049 * 140.77077 * 14 13 12 17 17 N 1.31626 * 120.00219 * 358.06793 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 178.06667 * 16 14 13 19 19 H 1.48505 * 109.47179 * 90.00118 * 18 16 14 20 20 H 1.48501 * 109.47144 * 209.99977 * 18 16 14 21 21 H 1.48498 * 109.47081 * 330.00252 * 18 16 14 22 22 C 1.46843 * 119.23437 * 303.09850 * 13 12 11 23 23 C 1.53179 * 117.71817 * 0.14414 * 10 7 6 24 24 C 1.54630 * 110.60026 * 186.95769 * 3 2 1 25 25 C 1.54662 * 101.68553 * 93.72245 * 24 3 2 26 26 N 1.46763 * 105.37760 * 25.76981 * 25 24 3 27 27 C 1.34411 * 111.30380 * 342.58592 * 26 25 24 28 28 O 1.21281 * 124.94623 * 180.69642 * 27 26 25 29 29 H 1.08996 * 109.47448 * 305.79321 * 1 2 3 30 30 H 1.09004 * 109.47361 * 65.79203 * 1 2 3 31 31 H 1.09005 * 109.46980 * 185.79293 * 1 2 3 32 32 H 1.09002 * 109.47228 * 240.00530 * 2 1 3 33 33 H 1.08992 * 109.47247 * 120.00346 * 2 1 3 34 34 H 0.96996 * 119.99876 * 4.24761 * 6 4 3 35 35 H 1.08994 * 117.50196 * 214.95809 * 9 7 6 36 36 H 1.09000 * 117.50081 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.58962 * 278.67650 * 11 10 7 38 38 H 1.08999 * 109.58801 * 39.10927 * 11 10 7 39 39 H 1.08997 * 109.58423 * 291.50887 * 12 11 10 40 40 H 1.09003 * 109.57714 * 171.10357 * 12 11 10 41 41 H 0.97001 * 120.00325 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58021 * 297.10552 * 22 13 12 43 43 H 1.09003 * 109.69823 * 176.76667 * 22 13 12 44 44 H 1.09007 * 109.58434 * 320.89617 * 23 10 7 45 45 H 1.09002 * 109.59175 * 81.32349 * 23 10 7 46 46 H 1.08998 * 110.97601 * 212.06108 * 24 3 2 47 47 H 1.09005 * 110.97108 * 335.78611 * 24 3 2 48 48 H 1.09003 * 110.39916 * 266.74589 * 25 24 3 49 49 H 1.08992 * 110.18237 * 144.68815 * 25 24 3 50 50 H 0.97003 * 124.34312 * 162.86211 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6388 2.1424 1.2729 5 8 1.0626 3.2084 1.2232 6 7 1.9204 1.5836 2.4667 7 6 1.4492 2.2165 3.7010 8 1 1.0180 3.2108 3.5847 9 6 0.8503 1.3079 4.7770 10 6 2.2305 1.9312 4.9830 11 6 2.3540 3.0624 6.0086 12 6 2.6789 2.4535 7.3780 13 7 3.8280 1.5506 7.2343 14 6 4.9570 1.7413 7.9856 15 1 5.3171 2.7418 8.1748 16 6 5.6384 0.6488 8.5039 17 7 5.1785 -0.5685 8.3055 18 14 7.2083 0.9059 9.4831 19 1 6.8742 1.0653 10.9212 20 1 8.0984 -0.2700 9.3091 21 1 7.9003 2.1267 8.9974 22 6 3.7524 0.4406 6.2760 23 6 3.4494 1.0087 4.8842 24 6 3.5759 1.4766 -0.1753 25 6 3.7127 1.6427 -1.7069 26 7 2.4718 2.2958 -2.1399 27 6 1.5124 2.1907 -1.2044 28 8 0.3874 2.6311 -1.3105 29 1 -0.3634 0.6010 0.8335 30 1 -0.3634 0.4214 -0.9373 31 1 -0.3633 -1.0225 0.1037 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.4350 0.7624 2.5085 35 1 0.0253 1.7046 5.3687 36 1 0.8066 0.2394 4.5662 37 1 3.1542 3.7400 5.7108 38 1 1.4124 3.6083 6.0657 39 1 1.8178 1.8935 7.7425 40 1 2.9249 3.2484 8.0822 41 1 5.6546 -1.3319 8.6680 42 1 2.9577 -0.2441 6.5720 43 1 4.7036 -0.0914 6.2542 44 1 3.2345 0.1920 4.1949 45 1 4.3087 1.5755 4.5258 46 1 4.0102 2.3250 0.3534 47 1 4.0271 0.5410 0.1553 48 1 3.8141 0.6694 -2.1871 49 1 4.5716 2.2713 -1.9417 50 1 2.3574 2.7423 -2.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661066554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:06 Heat of formation + Delta-G solvation = -54.166395 kcal Electronic energy + Delta-G solvation = -30359.450701 eV Core-core repulsion = 26386.481230 eV Total energy + Delta-G solvation = -3972.969471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36815 -40.66109 -39.36346 -37.56507 -37.05461 -35.42274 -34.27222 -33.04873 -31.70828 -31.18581 -29.87258 -28.42292 -26.20783 -24.37741 -24.04231 -23.93233 -23.05008 -22.78793 -21.80626 -20.47052 -19.78529 -18.65477 -18.31922 -17.74770 -17.36498 -16.85415 -16.70231 -16.23213 -15.89600 -15.63323 -15.33287 -15.18841 -15.05899 -14.90079 -14.65577 -14.42989 -14.25130 -14.15963 -13.95018 -13.73040 -13.29737 -13.17931 -12.96963 -12.94630 -12.88056 -12.69200 -12.63994 -12.52217 -12.30371 -12.18124 -11.94269 -11.81435 -11.80793 -11.36016 -11.21286 -10.92432 -10.83136 -10.62631 -10.48364 -10.05607 -9.65937 -8.42645 -7.83428 -5.43525 1.40744 1.45993 1.48362 1.49853 1.58425 2.02309 2.46758 2.52131 2.95221 3.08875 3.31479 3.33334 3.63084 3.69343 3.78164 3.84567 3.89019 3.97489 4.03283 4.16504 4.26859 4.34663 4.40066 4.56643 4.63976 4.73961 4.75017 4.77692 4.89345 4.90223 4.92772 4.95768 4.98627 5.02589 5.04472 5.07926 5.13462 5.24378 5.31261 5.33959 5.40869 5.49937 5.59141 5.69217 5.83802 5.86064 5.99485 6.45924 6.50831 7.14061 7.23695 7.26229 7.90399 8.46150 9.19943 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.002741 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.887069 B =10214.501865 C =10761.535094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.097 4.097 3 C -0.114 4.114 4 C 0.534 3.466 5 O -0.575 6.575 6 N -0.678 5.678 7 C 0.082 3.918 8 H 0.116 0.884 9 C -0.169 4.169 10 C -0.110 4.110 11 C -0.089 4.089 12 C 0.148 3.852 13 N -0.609 5.609 14 C -0.270 4.270 15 H 0.056 0.944 16 C -0.037 4.037 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.271 1.271 22 C 0.184 3.816 23 C -0.088 4.088 24 C -0.124 4.124 25 C 0.102 3.898 26 N -0.725 5.725 27 C 0.530 3.470 28 O -0.559 6.559 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.414 0.586 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.016 0.984 40 H 0.049 0.951 41 H 0.251 0.749 42 H -0.002 1.002 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.138 0.862 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -2.019 -21.170 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C -0.121 4.121 4 C 0.321 3.679 5 O -0.454 6.454 6 N -0.329 5.329 7 C -0.024 4.024 8 H 0.134 0.866 9 C -0.208 4.208 10 C -0.112 4.112 11 C -0.128 4.128 12 C 0.022 3.978 13 N -0.332 5.332 14 C -0.401 4.401 15 H 0.073 0.927 16 C -0.233 4.233 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.196 1.196 22 C 0.058 3.942 23 C -0.127 4.127 24 C -0.162 4.162 25 C -0.021 4.021 26 N -0.380 5.380 27 C 0.314 3.686 28 O -0.436 6.436 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.252 0.748 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.156 0.844 48 H 0.128 0.872 49 H 0.124 0.876 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.919 -1.245 -21.120 21.357 hybrid contribution 0.641 0.151 0.656 0.929 sum -2.278 -1.094 -20.464 20.619 Atomic orbital electron populations 1.21815 0.96258 1.02351 1.01004 1.21586 0.95733 0.89948 1.06202 1.21766 1.00524 0.98861 0.90973 1.20309 0.77750 0.84687 0.85159 1.90743 1.43045 1.23930 1.87662 1.45168 1.55457 1.28467 1.03767 1.21633 1.02849 0.97793 0.80141 0.86603 1.23611 0.96448 0.99753 1.00976 1.21808 0.93582 0.99584 0.96212 1.21535 1.00863 0.95579 0.94829 1.20957 0.89318 0.92693 0.94794 1.44112 1.12744 1.32430 1.43958 1.19376 1.02964 0.92137 1.25606 0.92683 1.26057 1.02600 0.95627 0.99046 1.70079 1.40950 0.97950 1.48348 0.85333 0.79479 0.77160 0.78785 1.21329 1.21586 1.19587 1.20523 0.98643 0.88641 0.86345 1.21575 0.95265 0.97368 0.98527 1.22979 0.89281 1.06616 0.97330 1.22429 0.86206 1.00218 0.93281 1.46177 1.13986 1.57871 1.20007 1.20399 0.84485 0.78354 0.85352 1.90728 1.21631 1.50452 1.80803 0.95086 0.93941 0.89984 0.87267 0.87843 0.74767 0.87734 0.87657 0.92852 0.90667 0.96635 0.93230 0.93940 0.98376 0.92704 0.90618 0.92870 0.90366 0.84352 0.87248 0.87626 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.24 71.98 0.67 -2.40 16 2 C -0.10 -1.28 4.85 30.59 0.15 -1.13 16 3 C -0.11 -2.13 0.51 -52.93 -0.03 -2.15 16 4 C 0.53 14.48 5.36 87.66 0.47 14.95 16 5 O -0.58 -21.94 15.09 13.81 0.21 -21.73 16 6 N -0.68 -15.86 5.17 -442.76 -2.29 -18.15 16 7 C 0.08 2.28 6.15 44.94 0.28 2.56 16 8 H 0.12 3.66 7.39 -2.39 -0.02 3.64 16 9 C -0.17 -4.52 9.86 30.55 0.30 -4.22 16 10 C -0.11 -3.39 1.94 -52.17 -0.10 -3.49 16 11 C -0.09 -2.99 5.83 30.77 0.18 -2.81 16 12 C 0.15 6.12 6.51 86.43 0.56 6.68 16 13 N -0.61 -29.85 2.91 -698.91 -2.03 -31.88 16 14 C -0.27 -14.63 9.48 84.03 0.80 -13.83 16 15 H 0.06 2.96 7.83 -2.91 -0.02 2.94 16 16 C -0.04 -2.00 5.19 84.86 0.44 -1.56 16 17 N -0.93 -52.82 11.10 21.65 0.24 -52.58 16 18 Si 0.96 43.60 29.55 68.60 2.03 45.63 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.18 8.30 5.29 86.43 0.46 8.76 16 23 C -0.09 -2.93 5.37 30.77 0.17 -2.77 16 24 C -0.12 -1.25 6.23 31.72 0.20 -1.05 16 25 C 0.10 0.64 7.79 86.90 0.68 1.32 16 26 N -0.72 -10.49 6.24 -459.51 -2.87 -13.36 16 27 C 0.53 12.89 6.19 87.90 0.54 13.43 16 28 O -0.56 -19.66 15.81 13.81 0.22 -19.44 16 29 H 0.03 0.77 7.23 -2.39 -0.02 0.76 16 30 H 0.04 1.00 6.73 -2.38 -0.02 0.99 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.93 7.21 -2.39 -0.02 0.91 16 34 H 0.41 7.39 6.22 -92.71 -0.58 6.81 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.18 8.10 -2.39 -0.02 2.17 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 41 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.05 2.82 6.24 -2.39 -0.01 2.80 16 44 H 0.08 1.99 6.75 -2.38 -0.02 1.97 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 1.03 7.91 -2.39 -0.02 1.01 16 47 H 0.14 0.44 7.91 -2.38 -0.02 0.42 16 48 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.42 4.88 8.96 -92.71 -0.83 4.05 16 Total: -1.00 -80.27 389.11 0.81 -79.45 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.45 Total: 19.79 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.75 Total: 12.28 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.94 Total: -115.98 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: 0.43 Total: -41.17 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -80.27 0.81 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661066554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.286 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds