Wall clock time and date at job start Tue Mar 31 2020 20:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47072 * 2 1 4 4 N 1.30005 * 127.33721 * 89.97478 * 3 2 1 5 5 O 1.20663 * 112.30267 * 180.02562 * 4 3 2 6 6 C 1.33499 * 113.15451 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.82720 * 179.73517 * 6 5 4 8 8 C 1.37359 * 106.33937 * 359.97438 * 6 5 4 9 9 C 1.47401 * 128.56031 * 179.97438 * 8 6 5 10 10 O 1.21609 * 119.99800 * 90.02719 * 9 8 6 11 11 N 1.34772 * 120.00051 * 270.02595 * 9 8 6 12 12 C 1.46508 * 119.99812 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.46954 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47158 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47434 * 177.30917 * 14 13 12 16 16 H 1.09004 * 109.87075 * 306.76558 * 15 14 13 17 17 C 1.54321 * 109.88469 * 185.75468 * 15 14 13 18 18 C 1.55160 * 102.93964 * 218.38912 * 17 15 14 19 19 C 1.54904 * 101.58318 * 35.49764 * 18 17 15 20 20 N 1.47026 * 109.88671 * 67.78137 * 15 14 13 21 21 C 1.36943 * 125.64753 * 298.32093 * 20 15 14 22 22 H 1.08004 * 119.99703 * 343.48982 * 21 20 15 23 23 C 1.38804 * 119.99920 * 163.49363 * 21 20 15 24 24 N 1.31621 * 120.00168 * 161.45049 * 23 21 20 25 25 Si 1.86800 * 120.00107 * 341.44466 * 23 21 20 26 26 H 1.48503 * 109.47039 * 84.80113 * 25 23 21 27 27 H 1.48504 * 109.47349 * 204.80147 * 25 23 21 28 28 H 1.48501 * 109.47219 * 324.80396 * 25 23 21 29 29 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46684 * 300.00030 * 1 2 3 31 31 H 1.08998 * 109.46852 * 60.00116 * 1 2 3 32 32 H 1.08998 * 109.46976 * 239.99252 * 2 1 3 33 33 H 1.08998 * 109.46852 * 119.99884 * 2 1 3 34 34 H 1.09007 * 109.47097 * 0.02562 * 7 6 5 35 35 H 1.08990 * 109.47078 * 120.02444 * 7 6 5 36 36 H 1.09000 * 109.46660 * 240.02470 * 7 6 5 37 37 H 0.97000 * 120.00282 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47195 * 300.00273 * 12 11 9 39 39 H 1.09003 * 109.46789 * 60.00134 * 12 11 9 40 40 H 1.09001 * 109.47464 * 300.00197 * 13 12 11 41 41 H 1.09003 * 109.47190 * 60.00468 * 13 12 11 42 42 H 1.08998 * 109.46755 * 297.30695 * 14 13 12 43 43 H 1.08990 * 109.46923 * 57.30325 * 14 13 12 44 44 H 1.09007 * 110.71536 * 336.74743 * 17 15 14 45 45 H 1.08999 * 110.72260 * 100.02256 * 17 15 14 46 46 H 1.09001 * 111.00398 * 153.57497 * 18 17 15 47 47 H 1.08996 * 111.00200 * 277.38305 * 18 17 15 48 48 H 1.09005 * 110.36839 * 81.83234 * 19 18 17 49 49 H 1.08998 * 110.36878 * 204.15092 * 19 18 17 50 50 H 0.96997 * 120.00459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2948 2.1644 1.0336 5 8 2.6828 3.2632 0.7206 6 6 2.7453 3.4411 -0.6010 7 6 3.1802 4.6893 -1.3248 8 6 2.3293 2.2620 -1.1697 9 6 2.2090 1.9236 -2.5993 10 8 3.1525 1.4334 -3.1895 11 7 1.0535 2.1575 -3.2523 12 6 0.9339 1.8206 -4.6731 13 6 -0.4680 2.1833 -5.1668 14 6 -0.5932 1.8309 -6.6505 15 6 -2.0155 2.1311 -7.1278 16 1 -2.7367 1.6333 -6.4795 17 6 -2.1946 1.6460 -8.5818 18 6 -3.0743 2.7573 -9.2130 19 6 -2.5387 4.0222 -8.4970 20 7 -2.2511 3.5823 -7.1163 21 6 -2.2101 4.3887 -6.0102 22 1 -2.2570 3.9537 -5.0228 23 6 -2.1082 5.7651 -6.1582 24 7 -2.4299 6.5600 -5.1597 25 14 -1.5143 6.4892 -7.7745 26 1 -2.6591 6.6119 -8.7123 27 1 -0.9286 7.8318 -7.5299 28 1 -0.4829 5.5996 -8.3662 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4474 5.4564 -0.5979 35 1 4.0442 4.4644 -1.9499 36 1 2.3633 5.0499 -1.9500 37 1 0.3010 2.5489 -2.7816 38 1 1.6761 2.3797 -5.2428 39 1 1.1013 0.7521 -4.8084 40 1 -1.2100 1.6239 -4.5971 41 1 -0.6358 3.2518 -5.0315 42 1 0.1162 2.4253 -7.2262 43 1 -0.3785 0.7717 -6.7917 44 1 -1.2315 1.5822 -9.0884 45 1 -2.7093 0.6855 -8.6073 46 1 -2.9126 2.8196 -10.2892 47 1 -4.1284 2.5966 -8.9872 48 1 -1.6284 4.3756 -8.9813 49 1 -3.2963 4.8058 -8.4939 50 1 -2.3583 7.5218 -5.2630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663123934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:36 Heat of formation + Delta-G solvation = 31.009893 kcal Electronic energy + Delta-G solvation = -29579.161446 eV Core-core repulsion = 25609.885496 eV Total energy + Delta-G solvation = -3969.275950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.96377 -39.51680 -38.21550 -35.50618 -35.32679 -33.76299 -32.66130 -32.50389 -31.48782 -29.95888 -28.87247 -27.95266 -25.57639 -24.70348 -24.22392 -23.33057 -21.65101 -20.75524 -20.49137 -19.85590 -19.23079 -17.92815 -17.81649 -16.88946 -16.39332 -16.03603 -15.75912 -15.26762 -15.08036 -14.77451 -14.50839 -14.03961 -13.75713 -13.49387 -13.40192 -13.26901 -13.05463 -12.95431 -12.84268 -12.69229 -12.48163 -12.14187 -12.00030 -11.81206 -11.67597 -11.36939 -11.19499 -11.05148 -11.03131 -10.87429 -10.47465 -10.40656 -10.34843 -10.05243 -9.92175 -9.88703 -9.72754 -9.46746 -9.25995 -8.98879 -8.75221 -7.07036 -5.97350 -3.27392 1.20939 1.79805 2.40931 2.73289 3.31071 3.32478 3.44146 3.45891 3.93031 4.11922 4.50530 4.71622 4.80062 4.90090 4.92430 5.01684 5.09926 5.14374 5.21696 5.24502 5.26170 5.29805 5.39782 5.47565 5.52087 5.59091 5.61488 5.67151 5.75749 5.79021 5.81006 5.92711 5.97053 5.99512 6.08775 6.10989 6.22217 6.26361 6.36283 6.41609 6.53508 6.62523 6.66149 6.78345 6.99819 7.05017 7.52018 7.67865 8.10682 8.16330 8.26042 8.78102 9.65532 10.17155 11.18180 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013089 B = 0.003057 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.696505 B = 9158.109237 C =10198.929939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.059 3.941 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.024 3.976 7 C -0.083 4.083 8 C -0.253 4.253 9 C 0.598 3.402 10 O -0.533 6.533 11 N -0.709 5.709 12 C 0.121 3.879 13 C -0.143 4.143 14 C -0.116 4.116 15 C 0.162 3.838 16 H 0.042 0.958 17 C -0.127 4.127 18 C -0.132 4.132 19 C 0.101 3.899 20 N -0.605 5.605 21 C -0.234 4.234 22 H 0.099 0.901 23 C 0.018 3.982 24 N -0.914 5.914 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.306 1.306 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.406 0.594 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.030 0.970 49 H 0.058 0.942 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -10.138 4.981 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.104 4.104 4 N -0.063 5.063 5 O 0.033 5.967 6 C -0.040 4.040 7 C -0.140 4.140 8 C -0.260 4.260 9 C 0.382 3.618 10 O -0.411 6.411 11 N -0.360 5.360 12 C -0.002 4.002 13 C -0.180 4.180 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.060 0.940 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.024 4.024 20 N -0.331 5.331 21 C -0.361 4.361 22 H 0.116 0.884 23 C -0.180 4.180 24 N -0.558 5.558 25 Si 0.719 3.281 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.200 1.200 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.978 -10.426 6.002 13.907 hybrid contribution 0.042 0.697 -1.426 1.588 sum 7.021 -9.729 4.575 12.840 Atomic orbital electron populations 1.21741 0.93302 1.02682 1.02792 1.20005 0.96833 0.87534 1.04160 1.24724 1.00445 0.98699 0.86523 1.73581 1.16719 0.92559 1.23392 1.84536 1.62823 1.26632 1.22664 1.24662 0.98266 0.97425 0.83619 1.20539 1.03492 0.90535 0.99477 1.21924 1.13317 0.95336 0.95412 1.16853 0.82978 0.78188 0.83792 1.90808 1.38420 1.43811 1.68012 1.46067 1.14500 1.63256 1.12144 1.21562 0.99392 0.99996 0.79237 1.22168 0.93195 1.06257 0.96424 1.21884 0.99331 0.99056 0.95301 1.20975 0.93749 0.85941 0.93849 0.94022 1.22608 0.99580 0.97823 0.96513 1.22708 0.99472 0.96297 0.98539 1.22123 0.97775 0.95917 0.86588 1.44947 1.81947 1.02949 1.03272 1.18638 1.44382 0.87487 0.85567 0.88403 1.24922 1.00599 0.95832 0.96650 1.69788 1.50684 1.03476 1.31890 0.87007 0.79326 0.77350 0.84433 1.21532 1.23470 1.20023 0.91327 0.92176 0.91977 0.89377 0.89596 0.89128 0.88558 0.88055 0.75963 0.91552 0.92141 0.92422 0.86822 0.92156 0.93340 0.91699 0.91762 0.91959 0.91451 0.95275 0.92423 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.05 -0.49 6.55 -27.88 -0.18 -0.67 16 3 C 0.06 0.76 6.84 -79.77 -0.55 0.21 16 4 N -0.36 -4.88 12.01 34.78 0.42 -4.46 16 5 O 0.09 1.22 11.06 18.64 0.21 1.43 16 6 C 0.02 0.29 7.55 -34.63 -0.26 0.03 16 7 C -0.08 -0.77 10.33 36.01 0.37 -0.39 16 8 C -0.25 -3.43 6.24 -102.89 -0.64 -4.07 16 9 C 0.60 8.95 7.63 -12.53 -0.10 8.85 16 10 O -0.53 -9.68 17.11 5.27 0.09 -9.59 16 11 N -0.71 -9.80 5.55 -61.39 -0.34 -10.14 16 12 C 0.12 1.76 5.67 -4.04 -0.02 1.73 16 13 C -0.14 -2.26 4.64 -26.73 -0.12 -2.39 16 14 C -0.12 -1.85 4.72 -26.73 -0.13 -1.98 16 15 C 0.16 2.87 3.22 -66.95 -0.22 2.65 16 16 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.13 -1.90 6.48 -24.90 -0.16 -2.06 16 18 C -0.13 -2.12 7.08 -24.58 -0.17 -2.29 16 19 C 0.10 2.09 4.67 -2.36 -0.01 2.08 16 20 N -0.61 -13.34 2.99 -162.32 -0.48 -13.82 16 21 C -0.23 -5.95 8.39 -15.06 -0.13 -6.07 16 22 H 0.10 2.57 6.63 -52.48 -0.35 2.23 16 23 C 0.02 0.49 5.47 -17.43 -0.10 0.39 16 24 N -0.91 -26.55 13.97 55.49 0.78 -25.77 16 25 Si 0.89 21.83 24.24 -169.99 -4.12 17.71 16 26 H -0.29 -6.95 6.43 56.52 0.36 -6.58 16 27 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.27 -6.63 6.20 56.52 0.35 -6.27 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 5.19 8.46 -40.82 -0.35 4.85 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 2.21 4.92 -51.93 -0.26 1.96 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.03 0.64 5.44 -51.93 -0.28 0.35 16 49 H 0.06 1.30 6.13 -51.93 -0.32 0.98 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -31.47 398.20 -7.87 -39.34 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.37 Total: 4.27 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.05 Total: -4.97 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.37 Total: -54.20 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.30 Total: -8.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.12 Total: 17.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.47 -7.87 -39.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.354 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds