Wall clock time and date at job start Tue Mar 31 2020 20:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47072 * 2 1 4 4 N 1.30005 * 127.33721 * 89.97478 * 3 2 1 5 5 O 1.20663 * 112.30267 * 180.02562 * 4 3 2 6 6 C 1.33499 * 113.15451 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.82720 * 179.73517 * 6 5 4 8 8 C 1.37359 * 106.33937 * 359.97438 * 6 5 4 9 9 C 1.47401 * 128.56031 * 179.97438 * 8 6 5 10 10 O 1.21609 * 119.99800 * 90.02719 * 9 8 6 11 11 N 1.34772 * 120.00051 * 270.02595 * 9 8 6 12 12 C 1.46508 * 119.99812 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.46954 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47158 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47434 * 177.30917 * 14 13 12 16 16 H 1.09004 * 109.87075 * 306.76558 * 15 14 13 17 17 C 1.54321 * 109.88469 * 185.75468 * 15 14 13 18 18 C 1.55160 * 102.93964 * 218.38912 * 17 15 14 19 19 C 1.54904 * 101.58318 * 35.49764 * 18 17 15 20 20 N 1.47026 * 109.88671 * 67.78137 * 15 14 13 21 21 C 1.36943 * 125.64753 * 298.32093 * 20 15 14 22 22 H 1.08004 * 119.99703 * 343.48982 * 21 20 15 23 23 C 1.38804 * 119.99920 * 163.49363 * 21 20 15 24 24 N 1.31621 * 120.00168 * 161.45049 * 23 21 20 25 25 Si 1.86800 * 120.00107 * 341.44466 * 23 21 20 26 26 H 1.48503 * 109.47039 * 84.80113 * 25 23 21 27 27 H 1.48504 * 109.47349 * 204.80147 * 25 23 21 28 28 H 1.48501 * 109.47219 * 324.80396 * 25 23 21 29 29 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46684 * 300.00030 * 1 2 3 31 31 H 1.08998 * 109.46852 * 60.00116 * 1 2 3 32 32 H 1.08998 * 109.46976 * 239.99252 * 2 1 3 33 33 H 1.08998 * 109.46852 * 119.99884 * 2 1 3 34 34 H 1.09007 * 109.47097 * 0.02562 * 7 6 5 35 35 H 1.08990 * 109.47078 * 120.02444 * 7 6 5 36 36 H 1.09000 * 109.46660 * 240.02470 * 7 6 5 37 37 H 0.97000 * 120.00282 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47195 * 300.00273 * 12 11 9 39 39 H 1.09003 * 109.46789 * 60.00134 * 12 11 9 40 40 H 1.09001 * 109.47464 * 300.00197 * 13 12 11 41 41 H 1.09003 * 109.47190 * 60.00468 * 13 12 11 42 42 H 1.08998 * 109.46755 * 297.30695 * 14 13 12 43 43 H 1.08990 * 109.46923 * 57.30325 * 14 13 12 44 44 H 1.09007 * 110.71536 * 336.74743 * 17 15 14 45 45 H 1.08999 * 110.72260 * 100.02256 * 17 15 14 46 46 H 1.09001 * 111.00398 * 153.57497 * 18 17 15 47 47 H 1.08996 * 111.00200 * 277.38305 * 18 17 15 48 48 H 1.09005 * 110.36839 * 81.83234 * 19 18 17 49 49 H 1.08998 * 110.36878 * 204.15092 * 19 18 17 50 50 H 0.96997 * 120.00459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2948 2.1644 1.0336 5 8 2.6828 3.2632 0.7206 6 6 2.7453 3.4411 -0.6010 7 6 3.1802 4.6893 -1.3248 8 6 2.3293 2.2620 -1.1697 9 6 2.2090 1.9236 -2.5993 10 8 3.1525 1.4334 -3.1895 11 7 1.0535 2.1575 -3.2523 12 6 0.9339 1.8206 -4.6731 13 6 -0.4680 2.1833 -5.1668 14 6 -0.5932 1.8309 -6.6505 15 6 -2.0155 2.1311 -7.1278 16 1 -2.7367 1.6333 -6.4795 17 6 -2.1946 1.6460 -8.5818 18 6 -3.0743 2.7573 -9.2130 19 6 -2.5387 4.0222 -8.4970 20 7 -2.2511 3.5823 -7.1163 21 6 -2.2101 4.3887 -6.0102 22 1 -2.2570 3.9537 -5.0228 23 6 -2.1082 5.7651 -6.1582 24 7 -2.4299 6.5600 -5.1597 25 14 -1.5143 6.4892 -7.7745 26 1 -2.6591 6.6119 -8.7123 27 1 -0.9286 7.8318 -7.5299 28 1 -0.4829 5.5996 -8.3662 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4474 5.4564 -0.5979 35 1 4.0442 4.4644 -1.9499 36 1 2.3633 5.0499 -1.9500 37 1 0.3010 2.5489 -2.7816 38 1 1.6761 2.3797 -5.2428 39 1 1.1013 0.7521 -4.8084 40 1 -1.2100 1.6239 -4.5971 41 1 -0.6358 3.2518 -5.0315 42 1 0.1162 2.4253 -7.2262 43 1 -0.3785 0.7717 -6.7917 44 1 -1.2315 1.5822 -9.0884 45 1 -2.7093 0.6855 -8.6073 46 1 -2.9126 2.8196 -10.2892 47 1 -4.1284 2.5966 -8.9872 48 1 -1.6284 4.3756 -8.9813 49 1 -3.2963 4.8058 -8.4939 50 1 -2.3583 7.5218 -5.2630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663123934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:35 Heat of formation + Delta-G solvation = 11.198782 kcal Electronic energy + Delta-G solvation = -29580.020520 eV Core-core repulsion = 25609.885496 eV Total energy + Delta-G solvation = -3970.135024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.97279 -40.74994 -39.70321 -36.66165 -36.38199 -34.74420 -34.55440 -33.78855 -32.38582 -31.70301 -30.14299 -28.93566 -26.79623 -26.18717 -25.42241 -24.49602 -23.11005 -21.98428 -21.67115 -20.88103 -20.69980 -19.05555 -18.86973 -18.68874 -17.47648 -17.45194 -17.11408 -16.80280 -16.48141 -15.75798 -15.49604 -15.21263 -14.98612 -14.94641 -14.75884 -14.37027 -14.29663 -14.20693 -13.83046 -13.77064 -13.63851 -13.52596 -13.42201 -13.10114 -12.71879 -12.63508 -12.59419 -12.50305 -12.40099 -12.05761 -11.93670 -11.80779 -11.64490 -11.49247 -11.34130 -11.18426 -11.05123 -11.01208 -10.70056 -10.47865 -10.20836 -8.93698 -8.05753 -5.29514 0.21293 0.78922 1.22778 1.32479 1.41280 1.47145 1.72671 2.22908 2.48237 2.98986 3.17446 3.17655 3.39122 3.67220 3.84802 3.87560 3.98105 4.07082 4.14676 4.19753 4.23134 4.26764 4.28245 4.34573 4.47631 4.49895 4.53829 4.63095 4.69565 4.79155 4.81846 4.83908 4.86528 4.90484 4.98114 4.99131 5.02766 5.04154 5.15050 5.20700 5.23385 5.29176 5.34949 5.40974 5.63057 5.66636 5.84067 6.21719 6.34814 6.87397 6.98019 7.10973 7.67032 8.25173 9.13289 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013089 B = 0.003057 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.696505 B = 9158.109237 C =10198.929939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.059 3.941 4 N -0.373 5.373 5 O 0.091 5.909 6 C 0.034 3.966 7 C -0.084 4.084 8 C -0.278 4.278 9 C 0.607 3.393 10 O -0.567 6.567 11 N -0.702 5.702 12 C 0.130 3.870 13 C -0.131 4.131 14 C -0.111 4.111 15 C 0.151 3.849 16 H 0.042 0.958 17 C -0.117 4.117 18 C -0.122 4.122 19 C 0.090 3.910 20 N -0.622 5.622 21 C -0.200 4.200 22 H 0.082 0.918 23 C -0.042 4.042 24 N -0.961 5.961 25 Si 0.936 3.064 26 H -0.283 1.283 27 H -0.320 1.320 28 H -0.268 1.268 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.410 0.590 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.022 0.978 49 H 0.033 0.967 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -12.509 3.704 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.104 4.104 4 N -0.081 5.081 5 O 0.032 5.968 6 C -0.030 4.030 7 C -0.141 4.141 8 C -0.286 4.286 9 C 0.391 3.609 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.007 3.993 13 C -0.169 4.169 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.060 0.940 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.035 4.035 20 N -0.348 5.348 21 C -0.328 4.328 22 H 0.100 0.900 23 C -0.235 4.235 24 N -0.610 5.610 25 Si 0.768 3.232 26 H -0.210 1.210 27 H -0.250 1.250 28 H -0.193 1.193 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.040 0.960 49 H 0.052 0.948 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.049 -12.829 4.689 15.371 hybrid contribution -0.014 1.337 -1.002 1.671 sum 7.035 -11.493 3.687 13.970 Atomic orbital electron populations 1.21719 0.92409 1.03833 1.02108 1.20141 0.97513 0.86135 1.04820 1.25152 0.99634 0.99593 0.86003 1.73568 1.17737 0.92964 1.23852 1.84519 1.62878 1.26533 1.22909 1.25143 0.96609 0.97838 0.83369 1.20699 1.03467 0.90017 0.99922 1.21897 1.15310 0.96464 0.94905 1.16915 0.82472 0.77332 0.84137 1.90784 1.39485 1.45529 1.68895 1.46025 1.14495 1.62739 1.11956 1.21424 0.98070 1.00491 0.79300 1.21946 0.94200 1.03625 0.97095 1.21822 0.97754 1.00936 0.94558 1.21268 0.94598 0.83171 0.96428 0.94010 1.22624 1.00427 0.98641 0.93790 1.22680 0.99779 0.93768 0.99763 1.22215 0.96975 0.97908 0.86395 1.45160 1.81971 1.04699 1.02992 1.18677 1.40227 0.87574 0.86353 0.90001 1.25403 1.02665 0.96617 0.98827 1.69898 1.54074 1.03236 1.33797 0.86209 0.79018 0.76012 0.81987 1.21030 1.25000 1.19327 0.89261 0.92589 0.92883 0.89329 0.88257 0.86586 0.87996 0.88259 0.75385 0.92788 0.90777 0.91547 0.90790 0.93607 0.89805 0.90435 0.88478 0.89098 0.90926 0.95996 0.94849 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.90 71.98 0.71 -1.75 16 2 C -0.05 -0.94 6.55 29.85 0.20 -0.75 16 3 C 0.06 1.50 6.84 45.16 0.31 1.81 16 4 N -0.37 -10.08 12.01 -44.79 -0.54 -10.62 16 5 O 0.09 2.30 11.06 76.93 0.85 3.15 16 6 C 0.03 0.82 7.55 25.48 0.19 1.01 16 7 C -0.08 -1.49 10.33 71.24 0.74 -0.75 16 8 C -0.28 -7.51 6.24 -18.74 -0.12 -7.62 16 9 C 0.61 18.00 7.63 86.66 0.66 18.66 16 10 O -0.57 -20.46 17.11 -4.06 -0.07 -20.53 16 11 N -0.70 -19.20 5.55 -466.39 -2.59 -21.78 16 12 C 0.13 3.65 5.67 86.38 0.49 4.14 16 13 C -0.13 -4.02 4.64 30.59 0.14 -3.88 16 14 C -0.11 -3.27 4.72 30.60 0.14 -3.13 16 15 C 0.15 4.94 3.22 45.34 0.15 5.09 16 16 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 17 C -0.12 -2.96 6.48 31.78 0.21 -2.75 16 18 C -0.12 -3.46 7.08 31.99 0.23 -3.23 16 19 C 0.09 3.58 4.67 86.79 0.41 3.98 16 20 N -0.62 -26.82 2.99 -667.47 -1.99 -28.82 16 21 C -0.20 -10.29 8.39 84.03 0.70 -9.58 16 22 H 0.08 4.42 6.63 -2.91 -0.02 4.40 16 23 C -0.04 -2.34 5.47 84.86 0.46 -1.88 16 24 N -0.96 -57.96 13.97 21.65 0.30 -57.66 16 25 Si 0.94 46.07 24.24 68.60 1.66 47.73 16 26 H -0.28 -13.51 6.43 99.48 0.64 -12.87 16 27 H -0.32 -16.33 7.11 99.48 0.71 -15.62 16 28 H -0.27 -12.65 6.20 99.48 0.62 -12.03 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 10.53 8.46 -92.71 -0.78 9.75 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.92 4.92 -2.39 -0.01 2.90 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 1.80 7.85 -2.38 -0.02 1.79 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.02 0.92 5.44 -2.38 -0.01 0.91 16 49 H 0.03 1.48 6.13 -2.39 -0.01 1.47 16 50 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -69.90 398.20 3.24 -66.66 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.00 Total: 22.49 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.62 Total: -0.63 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -4.82 Total: -118.88 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.78 Total: -17.37 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.66 Total: 47.73 kcal Total: -69.90 3.24 -66.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.857 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds