Wall clock time and date at job start Tue Mar 31 2020 20:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47040 * 2 1 4 4 N 1.30012 * 127.33839 * 90.02602 * 3 2 1 5 5 O 1.20657 * 112.30422 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15548 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.83109 * 179.97438 * 6 5 4 8 8 C 1.37359 * 106.34235 * 359.73752 * 6 5 4 9 9 C 1.47400 * 128.56700 * 180.25521 * 8 6 5 10 10 O 1.21605 * 120.00192 * 270.13686 * 9 8 6 11 11 N 1.34776 * 119.99645 * 90.14275 * 9 8 6 12 12 C 1.46498 * 119.99886 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47142 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47120 * 186.08986 * 14 13 12 16 16 H 1.08997 * 109.87610 * 50.48351 * 15 14 13 17 17 C 1.54322 * 109.88124 * 171.65576 * 15 14 13 18 18 C 1.55156 * 102.94306 * 141.61063 * 17 15 14 19 19 C 1.54910 * 101.58331 * 324.49715 * 18 17 15 20 20 N 1.47021 * 109.88406 * 289.46409 * 15 14 13 21 21 C 1.36940 * 125.64904 * 61.60773 * 20 15 14 22 22 H 1.08003 * 119.99566 * 307.12829 * 21 20 15 23 23 C 1.38808 * 120.00129 * 127.13030 * 21 20 15 24 24 N 1.31619 * 119.99591 * 172.04822 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 352.05039 * 23 21 20 26 26 H 1.48490 * 109.47253 * 93.98617 * 25 23 21 27 27 H 1.48498 * 109.46996 * 213.99129 * 25 23 21 28 28 H 1.48504 * 109.46938 * 333.98768 * 25 23 21 29 29 H 1.08993 * 109.47142 * 60.00456 * 1 2 3 30 30 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46962 * 299.99803 * 1 2 3 32 32 H 1.09002 * 109.47164 * 239.99440 * 2 1 3 33 33 H 1.09006 * 109.47130 * 119.99909 * 2 1 3 34 34 H 1.09001 * 109.46847 * 359.97438 * 7 6 5 35 35 H 1.09003 * 109.47202 * 119.96960 * 7 6 5 36 36 H 1.08995 * 109.47069 * 239.97546 * 7 6 5 37 37 H 0.96996 * 120.00086 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.46788 * 299.99291 * 12 11 9 39 39 H 1.09004 * 109.47067 * 59.99341 * 12 11 9 40 40 H 1.09005 * 109.46773 * 299.99365 * 13 12 11 41 41 H 1.08990 * 109.47586 * 59.99776 * 13 12 11 42 42 H 1.08998 * 109.47112 * 306.09317 * 14 13 12 43 43 H 1.09002 * 109.47100 * 66.08856 * 14 13 12 44 44 H 1.08994 * 110.72342 * 259.97153 * 17 15 14 45 45 H 1.08997 * 110.72114 * 23.24829 * 17 15 14 46 46 H 1.08996 * 111.01073 * 206.42659 * 18 17 15 47 47 H 1.09001 * 111.04190 * 82.58452 * 18 17 15 48 48 H 1.09000 * 110.37189 * 278.17287 * 19 18 17 49 49 H 1.08998 * 110.37275 * 155.84557 * 19 18 17 50 50 H 0.97008 * 119.99540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6843 3.2626 0.7207 6 6 2.7465 3.4406 -0.6009 7 6 3.1867 4.6869 -1.3248 8 6 2.3346 2.2602 -1.1697 9 6 2.2211 1.9193 -2.5993 10 8 1.1815 2.1299 -3.1939 11 7 3.2697 1.3743 -3.2473 12 6 3.1571 1.0360 -4.6682 13 6 4.4780 0.4375 -5.1562 14 6 4.3603 0.0836 -6.6401 15 6 5.6238 -0.6520 -7.0907 16 1 5.8395 -1.4719 -6.4056 17 6 5.4318 -1.1965 -8.5219 18 6 6.8243 -0.9725 -9.1686 19 6 7.2619 0.3601 -8.5111 20 7 6.7594 0.2810 -7.1273 21 6 7.2661 0.9640 -6.0540 22 1 6.6111 1.5585 -5.4342 23 6 8.6214 0.8924 -5.7626 24 7 9.1362 1.6675 -4.8317 25 14 9.7145 -0.3040 -6.6917 26 1 10.3392 0.3904 -7.8461 27 1 10.7760 -0.8109 -5.7853 28 1 8.8972 -1.4427 -7.1822 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.4575 5.4528 -0.5980 35 1 4.0498 4.4582 -1.9501 36 1 2.3715 5.0512 -1.9498 37 1 4.0990 1.2066 -2.7730 38 1 2.3558 0.3100 -4.8065 39 1 2.9338 1.9370 -5.2396 40 1 5.2790 1.1638 -5.0179 41 1 4.7017 -0.4633 -4.5849 42 1 3.4923 -0.5577 -6.7929 43 1 4.2441 0.9971 -7.2233 44 1 5.1826 -2.2573 -8.5008 45 1 4.6654 -0.6297 -9.0505 46 1 6.7402 -0.8654 -10.2500 47 1 7.5101 -1.7793 -8.9102 48 1 6.8110 1.2056 -9.0306 49 1 8.3484 0.4467 -8.5157 50 1 10.0834 1.6176 -4.6284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663123935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:39 Heat of formation + Delta-G solvation = 26.263684 kcal Electronic energy + Delta-G solvation = -29317.273214 eV Core-core repulsion = 25347.791453 eV Total energy + Delta-G solvation = -3969.481761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.97090 -39.52098 -38.10755 -35.51940 -35.30592 -33.77607 -32.65449 -32.49587 -31.48515 -29.95068 -28.81617 -27.93376 -25.53268 -24.71222 -24.23083 -23.26358 -21.39261 -20.72080 -20.32385 -19.86322 -19.30027 -17.95864 -17.79617 -17.00414 -16.40164 -16.19611 -15.80766 -15.35637 -14.79127 -14.61736 -14.46293 -14.14243 -13.73393 -13.56772 -13.45468 -13.31553 -12.96609 -12.86974 -12.69791 -12.61252 -12.42706 -12.09168 -12.03565 -11.81230 -11.69559 -11.36394 -11.21412 -11.04463 -10.95627 -10.85005 -10.63110 -10.37213 -10.32132 -10.04594 -9.97999 -9.89180 -9.81436 -9.47388 -9.41245 -8.97983 -8.57319 -6.51825 -6.02552 -3.71813 1.20176 1.79350 2.40052 2.72746 3.28347 3.31792 3.40459 3.48195 3.93111 4.11350 4.46249 4.71656 4.78845 4.91804 5.01063 5.01388 5.10484 5.13434 5.18706 5.22817 5.26174 5.38041 5.44639 5.48391 5.55358 5.60220 5.61346 5.65736 5.76324 5.79422 5.81859 5.97941 5.98534 6.01986 6.12695 6.16121 6.29833 6.31701 6.39631 6.47974 6.57758 6.67034 6.73825 6.88580 6.97328 7.07465 7.51462 8.04455 8.10315 8.15681 8.41783 8.81829 9.58078 10.29494 11.06172 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.002778 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.197540 B =10077.215927 C =11034.393262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.058 3.942 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.023 3.977 7 C -0.083 4.083 8 C -0.252 4.252 9 C 0.598 3.402 10 O -0.533 6.533 11 N -0.711 5.711 12 C 0.120 3.880 13 C -0.142 4.142 14 C -0.112 4.112 15 C 0.155 3.845 16 H 0.040 0.960 17 C -0.126 4.126 18 C -0.139 4.139 19 C 0.119 3.881 20 N -0.602 5.602 21 C -0.256 4.256 22 H 0.086 0.914 23 C 0.044 3.956 24 N -0.904 5.904 25 Si 0.891 3.109 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.263 1.263 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.027 0.973 49 H 0.038 0.962 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -1.197 4.491 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.104 4.104 4 N -0.062 5.062 5 O 0.034 5.966 6 C -0.041 4.041 7 C -0.140 4.140 8 C -0.259 4.259 9 C 0.382 3.618 10 O -0.410 6.410 11 N -0.361 5.361 12 C -0.003 4.003 13 C -0.179 4.179 14 C -0.152 4.152 15 C 0.049 3.951 16 H 0.058 0.942 17 C -0.164 4.164 18 C -0.177 4.177 19 C -0.005 4.005 20 N -0.329 5.329 21 C -0.384 4.384 22 H 0.103 0.897 23 C -0.158 4.158 24 N -0.544 5.544 25 Si 0.721 3.279 26 H -0.214 1.214 27 H -0.230 1.230 28 H -0.187 1.187 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.241 0.759 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.352 -1.118 5.535 14.497 hybrid contribution 1.204 -0.743 -0.983 1.723 sum -12.148 -1.862 4.552 13.106 Atomic orbital electron populations 1.21729 0.93518 1.02510 1.02754 1.19995 0.96819 0.87502 1.04174 1.24730 1.00468 0.98677 0.86528 1.73582 1.16619 0.92632 1.23386 1.84535 1.62748 1.26692 1.22660 1.24656 0.98100 0.97685 0.83642 1.20530 1.03278 0.90699 0.99466 1.21929 1.13113 0.95476 0.95420 1.16855 0.83752 0.77428 0.83805 1.90804 1.28898 1.53524 1.67737 1.46091 1.15525 1.62284 1.12206 1.21594 0.99430 1.00082 0.79207 1.22202 0.96327 1.02682 0.96701 1.21848 0.97991 1.00306 0.95058 1.21108 0.88543 0.91823 0.93629 0.94235 1.22574 0.96962 0.99906 0.96955 1.22795 0.97117 0.99186 0.98626 1.21857 0.97196 0.94052 0.87436 1.44569 1.35950 1.49357 1.03031 1.18584 0.92152 1.23109 1.04595 0.89733 1.25872 0.98223 0.96450 0.95225 1.69767 1.13124 1.39053 1.32465 0.86600 0.79662 0.82964 0.78708 1.21410 1.23015 1.18709 0.91824 0.91420 0.92404 0.89377 0.89495 0.89136 0.88109 0.88571 0.75876 0.92106 0.91622 0.87303 0.92102 0.93425 0.92175 0.92097 0.91728 0.92004 0.91848 0.95519 0.94360 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.05 16 2 C -0.05 -0.49 6.54 -27.89 -0.18 -0.67 16 3 C 0.06 0.76 6.84 -79.77 -0.55 0.21 16 4 N -0.36 -4.85 12.01 34.78 0.42 -4.44 16 5 O 0.09 1.21 11.06 18.64 0.21 1.41 16 6 C 0.02 0.27 7.55 -34.63 -0.26 0.01 16 7 C -0.08 -0.72 10.33 36.01 0.37 -0.34 16 8 C -0.25 -3.37 6.24 -102.89 -0.64 -4.02 16 9 C 0.60 8.78 7.63 -12.53 -0.10 8.68 16 10 O -0.53 -9.44 17.11 5.27 0.09 -9.35 16 11 N -0.71 -9.71 5.55 -61.39 -0.34 -10.05 16 12 C 0.12 1.71 5.67 -4.04 -0.02 1.68 16 13 C -0.14 -2.26 4.86 -26.73 -0.13 -2.39 16 14 C -0.11 -1.79 4.69 -26.73 -0.13 -1.92 16 15 C 0.16 2.85 3.21 -66.96 -0.22 2.63 16 16 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 17 C -0.13 -1.95 6.47 -24.90 -0.16 -2.11 16 18 C -0.14 -2.33 7.08 -24.58 -0.17 -2.50 16 19 C 0.12 2.43 6.19 -2.53 -0.02 2.42 16 20 N -0.60 -13.34 2.38 -162.58 -0.39 -13.73 16 21 C -0.26 -6.56 9.35 -15.06 -0.14 -6.70 16 22 H 0.09 2.26 5.18 -52.48 -0.27 1.98 16 23 C 0.04 1.21 5.50 -17.43 -0.10 1.11 16 24 N -0.90 -26.00 13.97 55.49 0.78 -25.23 16 25 Si 0.89 21.66 25.12 -169.99 -4.27 17.39 16 26 H -0.29 -6.94 7.00 56.52 0.40 -6.55 16 27 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.26 -6.20 6.44 56.52 0.36 -5.83 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.41 5.20 8.46 -40.82 -0.35 4.85 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.11 2.09 4.50 -51.93 -0.23 1.86 16 41 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.91 7.85 -51.93 -0.41 0.51 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 1.11 7.54 -51.93 -0.39 0.72 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.04 0.85 4.62 -51.93 -0.24 0.61 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -31.09 400.62 -7.79 -38.88 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.25 Total: 4.02 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.07 Total: -4.95 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.46 Total: -53.44 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.30 Total: -7.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.27 Total: 17.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.09 -7.79 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.147 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds