Wall clock time and date at job start Tue Mar 31 2020 19:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50691 * 109.47195 * 2 1 4 4 O 1.33499 * 126.82683 * 270.09816 * 3 2 1 5 5 N 1.20657 * 113.15927 * 180.30347 * 4 3 2 6 6 C 1.30017 * 112.30044 * 359.75632 * 5 4 3 7 7 C 1.37361 * 126.83608 * 89.99788 * 3 2 1 8 8 C 1.47394 * 128.55748 * 359.97438 * 7 3 2 9 9 O 1.21609 * 120.00758 * 359.70131 * 8 7 3 10 10 N 1.34782 * 119.99716 * 179.70035 * 8 7 3 11 11 C 1.46502 * 120.00068 * 185.06127 * 10 8 7 12 12 C 1.53003 * 109.46982 * 298.38952 * 11 10 8 13 13 N 1.46492 * 109.47234 * 305.46796 * 12 11 10 14 14 C 1.36938 * 119.99835 * 175.10143 * 13 12 11 15 15 H 1.07996 * 120.00118 * 0.02562 * 14 13 12 16 16 C 1.38819 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99565 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00080 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47010 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46975 * 120.00272 * 18 16 14 21 21 H 1.48497 * 109.47451 * 240.00042 * 18 16 14 22 22 C 1.53001 * 109.47103 * 178.39088 * 11 10 8 23 23 C 1.52994 * 109.47333 * 300.00137 * 22 11 10 24 24 C 1.52999 * 109.46983 * 300.00025 * 23 22 11 25 25 C 1.52998 * 109.47299 * 60.00160 * 24 23 22 26 26 C 1.52999 * 109.47069 * 58.39151 * 11 10 8 27 27 H 1.08998 * 109.46876 * 299.99897 * 26 11 10 28 28 C 1.53000 * 109.47140 * 180.02562 * 26 11 10 29 29 H 1.08998 * 109.46432 * 60.00510 * 1 2 3 30 30 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47117 * 300.00693 * 1 2 3 32 32 H 1.08996 * 109.47117 * 239.99306 * 2 1 3 33 33 H 1.09005 * 109.46445 * 119.99899 * 2 1 3 34 34 H 1.08004 * 127.33685 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99891 * 5.06361 * 10 8 7 36 36 H 1.09005 * 109.47031 * 65.47137 * 12 11 10 37 37 H 1.09000 * 109.46734 * 185.46381 * 12 11 10 38 38 H 0.96999 * 120.00043 * 355.10250 * 13 12 11 39 39 H 0.97000 * 119.99553 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47245 * 179.97438 * 22 11 10 41 41 H 1.09005 * 109.46979 * 59.99799 * 22 11 10 42 42 H 1.08999 * 109.47149 * 59.99703 * 23 22 11 43 43 H 1.08998 * 109.47479 * 180.02562 * 23 22 11 44 44 H 1.09003 * 109.47354 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47345 * 300.00038 * 24 23 22 46 46 H 1.09005 * 109.47172 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47414 * 59.99966 * 25 24 23 48 48 H 1.09003 * 109.46947 * 59.99812 * 28 26 11 49 49 H 1.08996 * 109.47373 * 180.02562 * 28 26 11 50 50 H 1.09001 * 109.46941 * 300.00424 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2974 2.1758 -1.0686 5 7 2.6942 3.2790 -0.7835 6 6 2.7611 3.4623 0.5019 7 6 2.3068 2.1972 1.0994 8 6 2.1824 1.8469 2.5257 9 8 1.7859 0.7436 2.8486 10 7 2.5081 2.7496 3.4721 11 6 2.4909 2.3669 4.8862 12 6 1.0729 1.9537 5.2855 13 7 0.1380 3.0309 4.9515 14 6 -1.2078 2.8481 5.1260 15 1 -1.5800 1.9100 5.5103 16 6 -2.0937 3.8691 4.8100 17 7 -1.6400 5.0126 4.3422 18 14 -3.9296 3.6195 5.0474 19 1 -4.1788 2.2565 5.5817 20 1 -4.4465 4.6287 6.0064 21 1 -4.6231 3.7750 3.7436 22 6 2.9359 3.5550 5.7414 23 6 4.3538 3.9683 5.3421 24 6 5.3089 2.7939 5.5643 25 6 4.8641 1.6058 4.7090 26 6 3.4461 1.1925 5.1083 27 1 3.1291 0.3462 4.4990 28 6 3.4277 0.7925 6.5850 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.0823 4.3535 1.0206 35 1 2.7538 3.6526 3.2170 36 1 0.7926 1.0490 4.7460 37 1 1.0387 1.7624 6.3580 38 1 0.4723 3.8737 4.6067 39 1 -2.2591 5.7259 4.1210 40 1 2.9227 3.2704 6.7936 41 1 2.2554 4.3917 5.5831 42 1 4.3665 4.2529 4.2900 43 1 4.6709 4.8143 5.9517 44 1 6.3192 3.0884 5.2802 45 1 5.2961 2.5091 6.6164 46 1 5.5443 0.7690 4.8676 47 1 4.8768 1.8905 3.6569 48 1 2.4174 0.4979 6.8690 49 1 4.1084 -0.0439 6.7434 50 1 3.7443 1.6387 7.1946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666063110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:03 Heat of formation + Delta-G solvation = 19.964280 kcal Electronic energy + Delta-G solvation = -31592.801679 eV Core-core repulsion = 27623.046756 eV Total energy + Delta-G solvation = -3969.754923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.80747 -40.58067 -37.98700 -34.84069 -34.45619 -33.77543 -33.04519 -32.03949 -31.19502 -30.14906 -29.43904 -26.64152 -25.11517 -24.58475 -23.91294 -22.94761 -21.99316 -21.76530 -20.48141 -20.10450 -18.13515 -17.78089 -17.58306 -17.10503 -16.45951 -15.65436 -15.37823 -14.81479 -14.67291 -14.49778 -14.29216 -13.97075 -13.67056 -13.54238 -13.39824 -13.23603 -12.93778 -12.67993 -12.52025 -12.38146 -12.25597 -12.02701 -11.72794 -11.49105 -11.45339 -11.42316 -11.12155 -10.94114 -10.85328 -10.81962 -10.74101 -10.31228 -10.26493 -10.09693 -10.04705 -9.90084 -9.62804 -9.37242 -9.24344 -8.75944 -8.47161 -6.81083 -5.72008 -2.97445 1.22912 1.90068 2.88410 3.45219 3.47319 3.51938 3.53674 3.61327 4.30577 4.39759 4.62864 4.71988 4.82059 4.86640 4.90467 5.05363 5.24092 5.26336 5.28107 5.31498 5.40355 5.50097 5.57160 5.64020 5.67812 5.70685 5.76178 5.79639 5.81594 5.88410 5.90161 5.99652 6.07642 6.11083 6.16007 6.19546 6.21074 6.31022 6.36128 6.44417 6.52732 6.53665 6.62287 6.72498 6.94683 7.14275 7.76826 7.88747 8.23783 8.47783 8.59517 9.59245 10.18160 10.53276 11.51293 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007380 B = 0.005964 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3793.242805 B = 4693.427565 C = 6959.431765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.045 3.955 4 O 0.087 5.913 5 N -0.359 5.359 6 C 0.023 3.977 7 C -0.251 4.251 8 C 0.606 3.394 9 O -0.525 6.525 10 N -0.699 5.699 11 C 0.184 3.816 12 C 0.141 3.859 13 N -0.724 5.724 14 C -0.226 4.226 15 H 0.068 0.932 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.099 4.099 27 H 0.090 0.910 28 C -0.148 4.148 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.197 0.803 35 H 0.395 0.605 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.380 0.620 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.283 -6.846 -3.695 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.019 4.019 4 O 0.028 5.972 5 N -0.065 5.065 6 C -0.159 4.159 7 C -0.258 4.258 8 C 0.393 3.607 9 O -0.403 6.403 10 N -0.348 5.348 11 C 0.099 3.901 12 C 0.013 3.987 13 N -0.368 5.368 14 C -0.358 4.358 15 H 0.086 0.914 16 C -0.212 4.212 17 N -0.586 5.586 18 Si 0.734 3.266 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.221 1.221 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.147 4.147 26 C -0.119 4.119 27 H 0.108 0.892 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.214 0.786 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.214 0.786 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.115 -6.981 -4.482 17.242 hybrid contribution -0.999 0.783 0.605 1.406 sum 14.116 -6.198 -3.877 15.897 Atomic orbital electron populations 1.21725 0.92717 1.02873 1.03174 1.20346 0.97392 0.85437 1.05067 1.24875 0.95683 0.96240 0.85150 1.84536 1.61447 1.17734 1.33512 1.73614 1.16619 0.98676 1.17608 1.26346 1.00777 0.99226 0.89591 1.22242 1.12780 0.94914 0.95899 1.16561 0.76890 0.84696 0.82602 1.90712 1.45488 1.22335 1.81754 1.45657 1.69268 1.13835 1.06082 1.20549 0.96214 0.94172 0.79183 1.21167 0.86913 0.93619 0.97049 1.42220 1.02442 1.13715 1.78471 1.19261 0.83053 0.98535 1.34922 0.91377 1.24663 0.97680 0.96340 1.02509 1.69652 1.33158 1.04592 1.51160 0.86166 0.86075 0.77148 0.77174 1.20634 1.22039 1.22077 1.21832 0.95972 0.98110 1.00132 1.21548 0.95268 0.97680 1.01151 1.21571 0.98146 0.95544 1.00429 1.21500 0.96159 0.97490 0.99543 1.21427 0.94146 0.98667 0.97622 0.89164 1.21953 1.02152 1.00865 0.95540 0.92577 0.91187 0.91012 0.89726 0.86831 0.78562 0.77077 0.93377 0.96137 0.78572 0.93838 0.90169 0.90272 0.92394 0.92004 0.92690 0.91716 0.92529 0.92371 0.91934 0.93124 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.90 37.16 0.37 -1.46 16 2 C -0.04 -0.52 6.05 -27.88 -0.17 -0.69 16 3 C 0.04 0.63 6.80 -34.63 -0.24 0.39 16 4 O 0.09 1.25 11.06 18.64 0.21 1.45 16 5 N -0.36 -5.33 12.01 31.81 0.38 -4.95 16 6 C 0.02 0.32 11.96 -14.72 -0.18 0.14 16 7 C -0.25 -3.81 6.46 -102.89 -0.67 -4.48 16 8 C 0.61 10.11 7.22 -12.53 -0.09 10.02 16 9 O -0.53 -9.81 11.54 5.27 0.06 -9.75 16 10 N -0.70 -10.63 3.50 -48.68 -0.17 -10.80 16 11 C 0.18 2.85 0.09 -131.82 -0.01 2.84 16 12 C 0.14 2.85 4.36 -4.04 -0.02 2.84 16 13 N -0.72 -17.87 5.18 -59.91 -0.31 -18.18 16 14 C -0.23 -6.36 9.99 -15.06 -0.15 -6.51 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 17 N -0.94 -28.05 13.06 55.49 0.72 -27.33 16 18 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 C -0.12 -1.72 4.37 -26.73 -0.12 -1.83 16 23 C -0.12 -1.31 5.75 -26.73 -0.15 -1.47 16 24 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 25 C -0.11 -1.25 5.29 -26.73 -0.14 -1.39 16 26 C -0.10 -1.34 2.01 -90.62 -0.18 -1.53 16 27 H 0.09 1.42 6.22 -51.93 -0.32 1.10 16 28 C -0.15 -1.82 8.15 37.16 0.30 -1.52 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.42 6.79 -51.93 -0.35 1.07 16 34 H 0.20 2.09 7.89 -52.48 -0.41 1.67 16 35 H 0.39 5.38 6.75 -40.82 -0.28 5.10 16 36 H 0.05 1.09 6.29 -51.93 -0.33 0.76 16 37 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 38 H 0.38 9.68 6.47 -40.82 -0.26 9.42 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 41 H 0.08 1.30 7.11 -51.93 -0.37 0.93 16 42 H 0.06 0.61 6.89 -51.93 -0.36 0.25 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 48 H 0.06 0.85 6.55 -51.93 -0.34 0.51 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -32.16 381.04 -7.69 -39.85 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.61 Total: 12.77 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.69 Total: -6.60 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.63 Total: -61.26 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.27 Total: -8.30 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.16 -7.69 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666063110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.814 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds