Wall clock time and date at job start Tue Mar 31 2020 20:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47193 * 2 1 4 4 N 1.30017 * 127.33749 * 270.19812 * 3 2 1 5 5 O 1.20659 * 112.30320 * 180.29663 * 4 3 2 6 6 C 1.33497 * 113.15071 * 359.69085 * 5 4 3 7 7 C 1.50705 * 126.82477 * 180.02562 * 6 5 4 8 8 C 1.37355 * 106.34712 * 0.02562 * 6 5 4 9 9 C 1.47400 * 128.56464 * 179.97438 * 8 6 5 10 10 O 1.21609 * 119.99510 * 89.75775 * 9 8 6 11 11 N 1.34773 * 120.00174 * 270.02672 * 9 8 6 12 12 C 1.46498 * 119.99738 * 179.72558 * 11 9 8 13 13 C 1.53009 * 109.46650 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46821 * 180.02562 * 13 12 11 15 15 C 1.53042 * 109.45630 * 295.02660 * 14 13 12 16 16 C 1.53198 * 109.30995 * 178.60132 * 15 14 13 17 17 N 1.46924 * 108.76258 * 54.65494 * 16 15 14 18 18 C 1.36940 * 120.62796 * 126.40346 * 17 16 15 19 19 H 1.07998 * 120.00465 * 331.82824 * 18 17 16 20 20 C 1.38814 * 119.99863 * 151.82156 * 18 17 16 21 21 N 1.31622 * 119.99881 * 343.08437 * 20 18 17 22 22 Si 1.86801 * 119.99808 * 163.08225 * 20 18 17 23 23 H 1.48501 * 109.47327 * 60.00190 * 22 20 18 24 24 H 1.48505 * 109.46774 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47221 * 300.00012 * 22 20 18 26 26 C 1.46924 * 118.74393 * 306.38271 * 17 16 15 27 27 C 1.53039 * 109.45735 * 174.97514 * 14 13 12 28 28 H 1.08999 * 109.46658 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47202 * 59.99861 * 1 2 3 30 30 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47394 * 240.00478 * 2 1 3 32 32 H 1.09004 * 109.47535 * 120.00292 * 2 1 3 33 33 H 1.09001 * 109.47014 * 269.97518 * 7 6 5 34 34 H 1.09005 * 109.47273 * 29.97570 * 7 6 5 35 35 H 1.08996 * 109.47295 * 149.97110 * 7 6 5 36 36 H 0.97005 * 119.99963 * 359.72820 * 11 9 8 37 37 H 1.08992 * 109.47165 * 299.99733 * 12 11 9 38 38 H 1.09004 * 109.46947 * 60.00471 * 12 11 9 39 39 H 1.08992 * 109.47156 * 299.99784 * 13 12 11 40 40 H 1.08994 * 109.47151 * 60.00411 * 13 12 11 41 41 H 1.08997 * 109.45979 * 55.00061 * 14 13 12 42 42 H 1.08997 * 109.50115 * 298.56572 * 15 14 13 43 43 H 1.08999 * 109.49644 * 58.66597 * 15 14 13 44 44 H 1.08996 * 109.59933 * 294.86982 * 16 15 14 45 45 H 1.08998 * 109.69764 * 174.50848 * 16 15 14 46 46 H 0.96998 * 119.99433 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.58884 * 293.82612 * 26 17 16 48 48 H 1.08991 * 109.70743 * 173.46536 * 26 17 16 49 49 H 1.08999 * 109.49732 * 301.33236 * 27 14 13 50 50 H 1.09000 * 109.49920 * 61.39953 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1655 -1.0337 5 8 2.6867 3.2618 -0.7208 6 6 2.7523 3.4386 0.6008 7 6 3.2002 4.6822 1.3247 8 6 2.3303 2.2617 1.1697 9 6 2.2113 1.9229 2.5993 10 8 1.1726 2.1435 3.1919 11 7 3.2554 1.3737 3.2508 12 6 3.1391 1.0425 4.6731 13 6 4.4550 0.4361 5.1648 14 6 4.3333 0.0896 6.6501 15 6 4.1515 1.3752 7.4602 16 6 3.9950 1.0220 8.9427 17 7 5.1435 0.2050 9.3576 18 6 5.9015 0.5653 10.4396 19 1 5.9853 1.6055 10.7180 20 6 6.5621 -0.4063 11.1788 21 7 6.2123 -1.6702 11.0659 22 14 7.9474 0.0799 12.3338 23 1 7.4297 1.0207 13.3595 24 1 8.4848 -1.1334 13.0005 25 1 9.0295 0.7387 11.5591 26 6 5.4629 -1.0063 8.5899 27 6 5.6026 -0.6304 7.1113 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.2753 4.6343 1.4981 34 1 2.9685 5.5585 0.7192 35 1 2.6808 4.7534 2.2803 36 1 4.0840 1.1977 2.7780 37 1 2.9214 1.9475 5.2402 38 1 2.3328 0.3226 4.8138 39 1 4.6723 -0.4690 4.5976 40 1 5.2616 1.1555 5.0241 41 1 3.4716 -0.5603 6.8020 42 1 5.0242 2.0148 7.3286 43 1 3.2603 1.8995 7.1154 44 1 3.0737 0.4583 9.0890 45 1 3.9627 1.9355 9.5366 46 1 6.6737 -2.3490 11.5827 47 1 4.6613 -1.7354 8.7073 48 1 6.3998 -1.4324 8.9486 49 1 5.7443 -1.5338 6.5181 50 1 6.4616 0.0280 6.9824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666386323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:32 Heat of formation + Delta-G solvation = -1.716175 kcal Electronic energy + Delta-G solvation = -28805.641468 eV Core-core repulsion = 24834.946409 eV Total energy + Delta-G solvation = -3970.695058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.95937 -40.77143 -39.48215 -36.74663 -36.36087 -35.11872 -34.61459 -33.02731 -32.38364 -31.57455 -30.18721 -28.91489 -27.11124 -25.94999 -25.02456 -24.24284 -23.48075 -22.17331 -21.76484 -20.86562 -20.57630 -19.02557 -18.80967 -18.67801 -17.45376 -17.09395 -16.81123 -16.53936 -15.78013 -15.70267 -15.44753 -15.27361 -15.12474 -14.91899 -14.83750 -14.41048 -14.26005 -14.13598 -13.89566 -13.86167 -13.72050 -13.52345 -13.02290 -12.91153 -12.82320 -12.63028 -12.53748 -12.51605 -12.29317 -12.14426 -11.94189 -11.88551 -11.78602 -11.59857 -11.35964 -11.03131 -10.98148 -10.96519 -10.50982 -10.44336 -10.17653 -8.64700 -7.85684 -5.31149 0.25531 0.80686 1.25697 1.47137 1.49150 1.56141 1.75336 2.23182 2.52399 3.01238 3.20735 3.28263 3.69863 3.75953 3.84897 3.87373 3.96327 4.08249 4.15402 4.21639 4.28450 4.32288 4.36838 4.45316 4.59227 4.61431 4.65588 4.68430 4.77811 4.80078 4.82380 4.88120 4.92109 4.98576 5.04612 5.06182 5.07566 5.13042 5.19799 5.29914 5.33854 5.39333 5.43924 5.49770 5.58657 5.69233 5.83624 6.38968 6.41327 7.04494 7.15290 7.17356 7.89890 8.41069 9.20110 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023652 B = 0.001979 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.570551 B =14148.572160 C =14613.976312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.055 3.945 4 N -0.375 5.375 5 O 0.091 5.909 6 C 0.035 3.965 7 C -0.082 4.082 8 C -0.276 4.276 9 C 0.604 3.396 10 O -0.566 6.566 11 N -0.700 5.700 12 C 0.122 3.878 13 C -0.108 4.108 14 C -0.070 4.070 15 C -0.117 4.117 16 C 0.137 3.863 17 N -0.612 5.612 18 C -0.262 4.262 19 H 0.064 0.936 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.277 1.277 26 C 0.174 3.826 27 C -0.120 4.120 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.008 0.992 45 H 0.048 0.952 46 H 0.249 0.751 47 H -0.009 1.009 48 H 0.050 0.950 49 H 0.069 0.931 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 8.133 -25.403 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.107 4.107 4 N -0.083 5.083 5 O 0.032 5.968 6 C -0.028 4.028 7 C -0.139 4.139 8 C -0.284 4.284 9 C 0.389 3.611 10 O -0.445 6.445 11 N -0.351 5.351 12 C -0.001 4.001 13 C -0.146 4.146 14 C -0.089 4.089 15 C -0.156 4.156 16 C 0.012 3.988 17 N -0.336 5.336 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.203 1.203 26 C 0.048 3.952 27 C -0.159 4.159 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.009 0.991 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.879 8.007 -26.185 28.006 hybrid contribution 0.779 -0.377 1.706 1.913 sum -5.099 7.630 -24.479 26.143 Atomic orbital electron populations 1.21702 0.93400 1.03540 1.01595 1.20131 0.96898 0.86549 1.05127 1.25120 0.99866 0.99432 0.86281 1.73603 1.17610 0.93117 1.23921 1.84523 1.62513 1.26644 1.23134 1.25230 0.96375 0.97996 0.83245 1.20722 1.04163 0.89949 0.99055 1.21869 1.15157 0.96632 0.94716 1.16938 0.83233 0.76801 0.84108 1.90830 1.30278 1.54677 1.68757 1.45893 1.15915 1.61814 1.11477 1.21471 0.98696 1.00453 0.79485 1.21704 0.96193 1.01894 0.94814 1.20883 0.97618 0.96527 0.93915 1.21974 1.01514 0.97201 0.94866 1.21087 0.88741 0.93968 0.95046 1.44343 1.30854 1.27250 1.31111 1.19486 1.23055 0.91933 1.04804 0.91783 1.25817 1.03367 0.95734 0.99925 1.70189 1.42508 1.00885 1.44677 0.85349 0.79721 0.76671 0.78760 1.20214 1.22072 1.20268 1.20612 0.98081 0.87212 0.89301 1.22011 0.97593 0.99860 0.96457 0.93799 0.92691 0.89434 0.88092 0.88732 0.86220 0.86981 0.89143 0.74732 0.91330 0.92046 0.89842 0.90121 0.92213 0.92342 0.90489 0.97436 0.93325 0.94163 0.99108 0.93168 0.91254 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.05 -0.73 6.55 29.85 0.20 -0.54 16 3 C 0.06 1.07 6.84 45.16 0.31 1.38 16 4 N -0.38 -7.83 12.01 -44.77 -0.54 -8.37 16 5 O 0.09 1.67 11.06 76.95 0.85 2.52 16 6 C 0.04 0.55 7.55 25.48 0.19 0.74 16 7 C -0.08 -0.64 10.33 71.24 0.74 0.09 16 8 C -0.28 -5.30 6.24 -18.74 -0.12 -5.42 16 9 C 0.60 13.13 7.60 86.66 0.66 13.79 16 10 O -0.57 -17.13 17.11 -4.06 -0.07 -17.20 16 11 N -0.70 -11.61 5.55 -466.39 -2.59 -14.20 16 12 C 0.12 2.36 5.43 86.38 0.47 2.83 16 13 C -0.11 -2.04 4.80 30.60 0.15 -1.89 16 14 C -0.07 -1.97 2.15 -10.76 -0.02 -1.99 16 15 C -0.12 -3.59 5.15 30.67 0.16 -3.43 16 16 C 0.14 5.64 6.52 86.36 0.56 6.20 16 17 N -0.61 -30.75 2.99 -699.11 -2.09 -32.84 16 18 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 19 H 0.06 3.46 7.88 -2.91 -0.02 3.43 16 20 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 21 N -0.94 -55.80 11.19 21.65 0.24 -55.56 16 22 Si 0.97 44.87 29.59 68.60 2.03 46.90 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 C 0.17 8.26 5.30 86.37 0.46 8.72 16 27 C -0.12 -4.12 5.36 30.67 0.16 -3.96 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.09 0.88 8.11 -2.39 -0.02 0.86 16 36 H 0.42 4.69 8.46 -92.70 -0.78 3.91 16 37 H 0.07 1.47 6.54 -2.39 -0.02 1.45 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.08 1.99 6.50 -2.39 -0.02 1.98 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 49 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -73.11 405.10 3.83 -69.28 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.15 Total: 10.73 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.84 Total: -1.25 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.98 Total: -110.97 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.78 Total: -14.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.11 3.83 -69.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666386323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.565 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds