Wall clock time and date at job start Tue Mar 31 2020 18:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30255 * 125.62094 * 2 1 4 4 C 1.34484 * 108.70432 * 179.83712 * 3 2 1 5 5 C 1.34326 * 107.66560 * 0.42376 * 4 3 2 6 6 C 1.50700 * 126.44451 * 179.76543 * 5 4 3 7 7 C 1.50699 * 109.46864 * 89.99966 * 6 5 4 8 8 O 1.21279 * 120.00537 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99915 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62926 * 355.94297 * 9 7 6 11 11 C 1.52765 * 109.00697 * 233.58370 * 10 9 7 12 12 C 1.53037 * 109.38156 * 305.58554 * 11 10 9 13 13 C 1.53043 * 109.53856 * 61.24232 * 12 11 10 14 14 H 1.08997 * 109.52185 * 58.59933 * 13 12 11 15 15 C 1.52996 * 109.50042 * 178.67901 * 13 12 11 16 16 C 1.46931 * 120.63348 * 176.22130 * 9 7 6 17 17 H 1.09003 * 109.58446 * 246.29854 * 16 9 7 18 18 C 1.53004 * 109.58208 * 6.57854 * 16 9 7 19 19 C 1.53001 * 109.46765 * 67.79919 * 18 16 9 20 20 N 1.46506 * 109.46858 * 186.38795 * 19 18 16 21 21 C 1.36942 * 119.99754 * 180.02562 * 20 19 18 22 22 H 1.07997 * 119.99834 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99536 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00459 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99643 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47132 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47103 * 120.00124 * 25 23 21 28 28 H 1.48500 * 109.46964 * 239.99905 * 25 23 21 29 29 O 1.33969 * 125.62288 * 180.30635 * 2 1 3 30 30 H 1.09007 * 109.47024 * 269.69726 * 1 2 3 31 31 H 1.08996 * 109.47303 * 149.69784 * 1 2 3 32 32 H 1.08998 * 109.47217 * 29.69026 * 1 2 3 33 33 H 1.07997 * 126.16860 * 180.16029 * 4 3 2 34 34 H 1.08996 * 109.47012 * 209.99778 * 6 5 4 35 35 H 1.08996 * 109.46850 * 330.00020 * 6 5 4 36 36 H 1.09002 * 109.58599 * 353.41933 * 10 9 7 37 37 H 1.09003 * 109.58492 * 113.84210 * 10 9 7 38 38 H 1.09000 * 109.55865 * 185.55120 * 11 10 9 39 39 H 1.08990 * 109.38639 * 65.51818 * 11 10 9 40 40 H 1.08996 * 109.46338 * 301.22227 * 12 11 10 41 41 H 1.08997 * 109.46055 * 181.25859 * 12 11 10 42 42 H 1.08999 * 109.47548 * 179.83487 * 15 13 12 43 43 H 1.09002 * 109.47152 * 299.84002 * 15 13 12 44 44 H 1.09002 * 109.47048 * 59.83401 * 15 13 12 45 45 H 1.09002 * 109.46676 * 187.79211 * 18 16 9 46 46 H 1.08995 * 109.47199 * 307.79602 * 18 16 9 47 47 H 1.08998 * 109.47502 * 306.39005 * 19 18 16 48 48 H 1.09002 * 109.47393 * 66.38670 * 19 18 16 49 49 H 0.96990 * 120.00002 * 359.97438 * 20 19 18 50 50 H 0.96998 * 120.00098 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0036 5 6 3.5698 -0.6756 -0.0036 6 6 4.7937 -1.5549 -0.0078 7 6 5.2011 -1.8555 1.4115 8 8 4.5610 -1.4003 2.3356 9 7 6.2775 -2.6296 1.6541 10 6 7.0109 -3.2597 0.5479 11 6 7.1134 -4.7612 0.8103 12 6 7.7336 -4.9945 2.1897 13 6 6.8383 -4.3745 3.2650 14 1 5.8445 -4.8190 3.2122 15 6 7.4422 -4.6368 4.6460 16 6 6.7361 -2.8642 3.0301 17 1 7.7134 -2.4031 3.1732 18 6 5.7340 -2.2585 4.0150 19 6 4.4212 -3.0418 3.9531 20 7 3.4139 -2.3726 4.7801 21 6 2.1522 -2.8957 4.8795 22 1 1.8997 -3.8012 4.3479 23 6 1.1977 -2.2614 5.6627 24 7 1.5053 -1.1575 6.3101 25 14 -0.5236 -2.9745 5.7977 26 1 -0.6126 -4.2111 4.9803 27 1 -0.8154 -3.2980 7.2173 28 1 -1.5109 -1.9815 5.3033 29 8 2.2872 -1.0890 -0.0058 30 1 -0.3633 -0.0054 1.0277 31 1 -0.3634 -0.8872 -0.5185 32 1 -0.3633 0.8927 -0.5090 33 1 4.4157 1.3162 0.0070 34 1 4.5697 -2.4869 -0.5267 35 1 5.6082 -1.0413 -0.5186 36 1 6.4783 -3.0892 -0.3877 37 1 8.0122 -2.8336 0.4837 38 1 7.7395 -5.2231 0.0470 39 1 6.1173 -5.2026 0.7798 40 1 8.7198 -4.5320 2.2274 41 1 7.8279 -6.0655 2.3691 42 1 6.8058 -4.1925 5.4113 43 1 7.5148 -5.7116 4.8127 44 1 8.4366 -4.1932 4.6979 45 1 6.1407 -2.3102 5.0250 46 1 5.5488 -1.2174 3.7507 47 1 4.0729 -3.0863 2.9212 48 1 4.5836 -4.0532 4.3256 49 1 3.6409 -1.5596 5.2578 50 1 0.8382 -0.7141 6.8570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692000322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:04 Heat of formation + Delta-G solvation = 27.918986 kcal Electronic energy + Delta-G solvation = -31143.884977 eV Core-core repulsion = 27174.474996 eV Total energy + Delta-G solvation = -3969.409981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.06517 -40.77314 -37.64197 -35.29830 -34.46933 -33.70320 -32.99323 -32.56099 -30.81819 -30.35050 -28.33437 -26.53510 -26.00382 -24.76423 -23.30676 -22.19686 -22.03441 -21.23489 -21.04194 -19.88958 -18.67250 -17.19878 -16.78864 -16.70341 -16.19253 -15.80583 -15.67946 -14.88918 -14.71904 -14.32779 -14.22995 -14.03867 -13.85409 -13.49676 -13.38693 -13.05638 -12.89721 -12.85805 -12.73108 -12.56102 -12.49446 -12.37284 -12.07110 -11.86328 -11.70147 -11.31298 -11.07777 -10.98209 -10.85694 -10.80361 -10.64516 -10.43600 -10.29144 -10.18957 -10.13789 -9.78281 -9.49818 -8.76687 -8.63467 -8.38185 -8.22861 -6.57792 -5.54756 -2.78747 1.64230 2.75699 2.81855 2.94442 3.18711 3.52615 3.57158 3.60167 4.26246 4.48878 4.58215 4.71751 4.76342 4.78053 4.81637 4.93635 5.00063 5.11039 5.17409 5.23193 5.28915 5.40691 5.51683 5.53705 5.58712 5.61529 5.63075 5.68995 5.72994 5.76644 5.77303 5.85626 6.00465 6.04181 6.06998 6.15995 6.21715 6.31464 6.36488 6.52875 6.56405 6.62398 6.68166 6.77116 7.21293 7.33522 7.55649 7.87030 7.97872 8.48588 8.65161 9.75160 10.41910 10.75957 11.69138 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.005706 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.200213 B = 4905.802898 C = 7788.807920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.200 3.800 3 N -0.488 5.488 4 C -0.025 4.025 5 C -0.029 4.029 6 C -0.053 4.053 7 C 0.490 3.510 8 O -0.461 6.461 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.137 4.137 12 C -0.113 4.113 13 C -0.109 4.109 14 H 0.085 0.915 15 C -0.145 4.145 16 C 0.163 3.837 17 H 0.066 0.934 18 C -0.131 4.131 19 C 0.175 3.825 20 N -0.722 5.722 21 C -0.220 4.220 22 H 0.063 0.937 23 C -0.020 4.020 24 N -0.935 5.935 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.293 1.293 29 O -0.192 6.192 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.025 0.975 48 H -0.003 1.003 49 H 0.381 0.619 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.844 -4.194 -17.412 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.007 4.007 3 N -0.218 5.218 4 C -0.164 4.164 5 C -0.083 4.083 6 C -0.093 4.093 7 C 0.276 3.724 8 O -0.332 6.332 9 N -0.348 5.348 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.151 4.151 13 C -0.128 4.128 14 H 0.103 0.897 15 C -0.202 4.202 16 C 0.060 3.940 17 H 0.084 0.916 18 C -0.169 4.169 19 C 0.048 3.952 20 N -0.364 5.364 21 C -0.352 4.352 22 H 0.081 0.919 23 C -0.215 4.215 24 N -0.585 5.585 25 Si 0.731 3.269 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.221 1.221 29 O -0.079 6.079 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.195 0.805 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.043 0.957 48 H 0.014 0.986 49 H 0.214 0.786 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.070 -3.474 -16.935 21.672 hybrid contribution -0.478 -0.918 0.285 1.073 sum 12.592 -4.392 -16.650 21.333 Atomic orbital electron populations 1.20265 0.81582 1.04462 1.05265 1.26163 0.96351 0.78562 0.99615 1.70392 1.01971 1.30310 1.19112 1.22851 0.95094 0.92640 1.05772 1.22363 0.83283 0.94638 1.07976 1.20095 0.92086 0.99998 0.97122 1.20262 0.80756 0.80729 0.90672 1.91050 1.50348 1.48971 1.42858 1.47968 1.29793 1.49862 1.07133 1.21612 0.96963 0.93231 0.89665 1.21853 1.02001 0.95804 0.97848 1.21584 0.98674 1.00771 0.94070 1.21659 1.00549 0.95632 0.95006 0.89704 1.21787 1.00557 1.01366 0.96532 1.21291 0.97522 0.94687 0.80536 0.91594 1.22383 0.95050 1.03242 0.96201 1.20760 0.87666 0.92337 0.94406 1.42212 1.08464 1.30101 1.55627 1.19237 0.88258 1.05602 1.22114 0.91869 1.24656 0.97937 0.97884 1.01046 1.69677 1.33462 1.19748 1.35652 0.86206 0.85579 0.77931 0.77154 1.20831 1.22105 1.22077 1.84358 1.16374 1.37723 1.69464 0.88411 0.89580 0.88377 0.80491 0.87640 0.86308 0.90069 0.91475 0.90915 0.91347 0.92048 0.91845 0.91487 0.92742 0.93016 0.92996 0.88126 0.95747 0.98576 0.78608 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.51 36.00 0.38 -0.35 16 2 C 0.20 3.40 8.34 -12.95 -0.11 3.29 16 3 N -0.49 -8.76 11.29 -11.10 -0.13 -8.88 16 4 C -0.02 -0.40 11.80 -17.77 -0.21 -0.61 16 5 C -0.03 -0.46 5.88 -35.69 -0.21 -0.67 16 6 C -0.05 -0.61 4.63 -29.04 -0.13 -0.74 16 7 C 0.49 7.40 6.59 -10.98 -0.07 7.32 16 8 O -0.46 -9.54 9.42 5.56 0.05 -9.49 16 9 N -0.61 -7.50 2.93 -165.47 -0.49 -7.98 16 10 C 0.11 0.86 6.30 -3.93 -0.02 0.84 16 11 C -0.14 -1.08 6.06 -26.83 -0.16 -1.24 16 12 C -0.11 -1.02 5.17 -26.69 -0.14 -1.16 16 13 C -0.11 -1.33 1.93 -90.50 -0.17 -1.51 16 14 H 0.08 1.27 6.14 -51.93 -0.32 0.95 16 15 C -0.14 -1.70 8.97 37.16 0.33 -1.36 16 16 C 0.16 2.20 2.67 -67.60 -0.18 2.02 16 17 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.13 -2.42 4.16 -26.73 -0.11 -2.53 16 19 C 0.18 3.98 4.23 -4.04 -0.02 3.96 16 20 N -0.72 -20.43 5.53 -59.90 -0.33 -20.76 16 21 C -0.22 -6.75 9.99 -15.06 -0.15 -6.90 16 22 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 24 N -0.94 -30.52 13.06 55.49 0.72 -29.80 16 25 Si 0.90 23.91 29.55 -169.99 -5.02 18.89 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 29 O -0.19 -3.45 10.78 5.35 0.06 -3.39 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 34 H 0.11 1.01 7.52 -51.93 -0.39 0.62 16 35 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.08 0.48 5.96 -51.93 -0.31 0.17 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.94 6.80 -51.93 -0.35 0.58 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.95 7.03 -51.93 -0.37 0.58 16 46 H 0.10 2.11 5.74 -53.05 -0.30 1.80 16 47 H 0.03 0.60 5.31 -51.93 -0.28 0.32 16 48 H 0.00 -0.07 6.61 -51.93 -0.34 -0.42 16 49 H 0.38 11.54 7.67 -40.82 -0.31 11.22 16 50 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -38.98 387.28 -8.39 -47.37 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.01 Total: 8.58 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.08 Total: -0.37 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -0.22 Total: -67.42 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.11 Total: -12.88 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.98 -8.39 -47.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692000322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.289 kcal (2) G-P(sol) polarization free energy of solvation -38.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds