Wall clock time and date at job start Tue Mar 31 2020 18:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30255 * 125.62094 * 2 1 4 4 C 1.34484 * 108.70432 * 179.83712 * 3 2 1 5 5 C 1.34326 * 107.66560 * 0.42376 * 4 3 2 6 6 C 1.50700 * 126.44451 * 179.76543 * 5 4 3 7 7 C 1.50699 * 109.46864 * 89.99966 * 6 5 4 8 8 O 1.21279 * 120.00537 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99915 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62926 * 355.94297 * 9 7 6 11 11 C 1.52765 * 109.00697 * 233.58370 * 10 9 7 12 12 C 1.53037 * 109.38156 * 305.58554 * 11 10 9 13 13 C 1.53043 * 109.53856 * 61.24232 * 12 11 10 14 14 H 1.08997 * 109.52185 * 58.59933 * 13 12 11 15 15 C 1.52996 * 109.50042 * 178.67901 * 13 12 11 16 16 C 1.46931 * 120.63348 * 176.22130 * 9 7 6 17 17 H 1.09003 * 109.58446 * 246.29854 * 16 9 7 18 18 C 1.53004 * 109.58208 * 6.57854 * 16 9 7 19 19 C 1.53001 * 109.46765 * 67.79919 * 18 16 9 20 20 N 1.46506 * 109.46858 * 186.38795 * 19 18 16 21 21 C 1.36942 * 119.99754 * 180.02562 * 20 19 18 22 22 H 1.07997 * 119.99834 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99536 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00459 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99643 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47132 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47103 * 120.00124 * 25 23 21 28 28 H 1.48500 * 109.46964 * 239.99905 * 25 23 21 29 29 O 1.33969 * 125.62288 * 180.30635 * 2 1 3 30 30 H 1.09007 * 109.47024 * 269.69726 * 1 2 3 31 31 H 1.08996 * 109.47303 * 149.69784 * 1 2 3 32 32 H 1.08998 * 109.47217 * 29.69026 * 1 2 3 33 33 H 1.07997 * 126.16860 * 180.16029 * 4 3 2 34 34 H 1.08996 * 109.47012 * 209.99778 * 6 5 4 35 35 H 1.08996 * 109.46850 * 330.00020 * 6 5 4 36 36 H 1.09002 * 109.58599 * 353.41933 * 10 9 7 37 37 H 1.09003 * 109.58492 * 113.84210 * 10 9 7 38 38 H 1.09000 * 109.55865 * 185.55120 * 11 10 9 39 39 H 1.08990 * 109.38639 * 65.51818 * 11 10 9 40 40 H 1.08996 * 109.46338 * 301.22227 * 12 11 10 41 41 H 1.08997 * 109.46055 * 181.25859 * 12 11 10 42 42 H 1.08999 * 109.47548 * 179.83487 * 15 13 12 43 43 H 1.09002 * 109.47152 * 299.84002 * 15 13 12 44 44 H 1.09002 * 109.47048 * 59.83401 * 15 13 12 45 45 H 1.09002 * 109.46676 * 187.79211 * 18 16 9 46 46 H 1.08995 * 109.47199 * 307.79602 * 18 16 9 47 47 H 1.08998 * 109.47502 * 306.39005 * 19 18 16 48 48 H 1.09002 * 109.47393 * 66.38670 * 19 18 16 49 49 H 0.96990 * 120.00002 * 359.97438 * 20 19 18 50 50 H 0.96998 * 120.00098 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0036 5 6 3.5698 -0.6756 -0.0036 6 6 4.7937 -1.5549 -0.0078 7 6 5.2011 -1.8555 1.4115 8 8 4.5610 -1.4003 2.3356 9 7 6.2775 -2.6296 1.6541 10 6 7.0109 -3.2597 0.5479 11 6 7.1134 -4.7612 0.8103 12 6 7.7336 -4.9945 2.1897 13 6 6.8383 -4.3745 3.2650 14 1 5.8445 -4.8190 3.2122 15 6 7.4422 -4.6368 4.6460 16 6 6.7361 -2.8642 3.0301 17 1 7.7134 -2.4031 3.1732 18 6 5.7340 -2.2585 4.0150 19 6 4.4212 -3.0418 3.9531 20 7 3.4139 -2.3726 4.7801 21 6 2.1522 -2.8957 4.8795 22 1 1.8997 -3.8012 4.3479 23 6 1.1977 -2.2614 5.6627 24 7 1.5053 -1.1575 6.3101 25 14 -0.5236 -2.9745 5.7977 26 1 -0.6126 -4.2111 4.9803 27 1 -0.8154 -3.2980 7.2173 28 1 -1.5109 -1.9815 5.3033 29 8 2.2872 -1.0890 -0.0058 30 1 -0.3633 -0.0054 1.0277 31 1 -0.3634 -0.8872 -0.5185 32 1 -0.3633 0.8927 -0.5090 33 1 4.4157 1.3162 0.0070 34 1 4.5697 -2.4869 -0.5267 35 1 5.6082 -1.0413 -0.5186 36 1 6.4783 -3.0892 -0.3877 37 1 8.0122 -2.8336 0.4837 38 1 7.7395 -5.2231 0.0470 39 1 6.1173 -5.2026 0.7798 40 1 8.7198 -4.5320 2.2274 41 1 7.8279 -6.0655 2.3691 42 1 6.8058 -4.1925 5.4113 43 1 7.5148 -5.7116 4.8127 44 1 8.4366 -4.1932 4.6979 45 1 6.1407 -2.3102 5.0250 46 1 5.5488 -1.2174 3.7507 47 1 4.0729 -3.0863 2.9212 48 1 4.5836 -4.0532 4.3256 49 1 3.6409 -1.5596 5.2578 50 1 0.8382 -0.7141 6.8570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692000322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:03 Heat of formation + Delta-G solvation = -1.623470 kcal Electronic energy + Delta-G solvation = -31145.166034 eV Core-core repulsion = 27174.474996 eV Total energy + Delta-G solvation = -3970.691038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.29890 -41.88701 -38.69613 -36.93062 -35.75038 -35.23752 -34.10618 -33.81015 -32.59847 -31.45256 -29.80658 -27.72412 -26.99939 -26.26856 -24.85553 -23.67258 -23.39004 -22.27791 -22.20106 -21.04710 -19.82168 -19.09240 -18.16002 -17.95933 -17.43742 -17.03686 -16.82622 -16.54133 -15.82256 -15.63040 -15.45781 -15.21146 -15.09488 -15.02033 -14.63135 -14.33886 -14.30359 -13.93591 -13.86792 -13.81063 -13.44927 -13.35480 -13.20477 -13.10219 -12.94193 -12.88544 -12.53805 -12.36148 -12.27796 -12.20130 -12.04776 -11.91200 -11.70762 -11.59945 -11.52217 -11.37776 -11.15913 -10.83905 -10.01438 -9.57796 -9.37112 -8.85677 -7.94392 -5.20302 0.42334 1.37949 1.41429 1.51182 1.62197 1.71733 1.76373 2.17823 2.53602 3.17018 3.37434 3.53376 3.65999 3.82230 3.91356 3.93870 4.04368 4.12487 4.15427 4.18052 4.30663 4.33839 4.41608 4.54781 4.56940 4.60999 4.62832 4.65811 4.68074 4.70767 4.86761 4.89732 4.92161 4.95976 5.00905 5.06626 5.07172 5.15905 5.28902 5.29381 5.37301 5.38400 5.41948 5.45221 5.52621 5.59441 5.84200 6.28023 6.54561 6.73326 7.31473 7.39122 8.15653 8.38509 9.30566 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.005706 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.200213 B = 4905.802898 C = 7788.807920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.179 3.821 3 N -0.517 5.517 4 C -0.044 4.044 5 C -0.036 4.036 6 C -0.044 4.044 7 C 0.483 3.517 8 O -0.532 6.532 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.135 4.135 12 C -0.108 4.108 13 C -0.106 4.106 14 H 0.049 0.951 15 C -0.143 4.143 16 C 0.168 3.832 17 H 0.092 0.908 18 C -0.117 4.117 19 C 0.188 3.812 20 N -0.734 5.734 21 C -0.234 4.234 22 H 0.062 0.938 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.972 3.028 26 H -0.268 1.268 27 H -0.288 1.288 28 H -0.290 1.290 29 O -0.215 6.215 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.202 0.798 34 H 0.131 0.869 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.016 0.984 48 H -0.010 1.010 49 H 0.366 0.634 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.871 -5.819 -20.006 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.028 4.028 3 N -0.247 5.247 4 C -0.182 4.182 5 C -0.089 4.089 6 C -0.083 4.083 7 C 0.271 3.729 8 O -0.409 6.409 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.145 4.145 13 C -0.125 4.125 14 H 0.067 0.933 15 C -0.200 4.200 16 C 0.064 3.936 17 H 0.109 0.891 18 C -0.155 4.155 19 C 0.062 3.938 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.080 0.920 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.801 3.199 26 H -0.192 1.192 27 H -0.215 1.215 28 H -0.217 1.217 29 O -0.103 6.103 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.219 0.781 34 H 0.149 0.851 35 H 0.186 0.814 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.033 0.967 48 H 0.007 0.993 49 H 0.196 0.804 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.160 -5.160 -19.588 25.301 hybrid contribution -1.019 -0.432 1.081 1.547 sum 14.140 -5.592 -18.508 23.953 Atomic orbital electron populations 1.20462 0.79225 1.06802 1.04959 1.27021 0.97871 0.78337 0.99526 1.70370 1.03159 1.31140 1.20044 1.23350 0.95265 0.93553 1.06041 1.23138 0.83627 0.95382 1.06732 1.20320 0.91635 1.01175 0.95213 1.20915 0.80513 0.79940 0.91482 1.91043 1.52734 1.51971 1.45126 1.48093 1.29149 1.48920 1.07768 1.22050 0.98222 0.92987 0.88831 1.21872 1.01550 0.95821 0.98031 1.21563 0.98668 1.01039 0.93254 1.21588 0.99730 0.94455 0.96742 0.93273 1.21768 1.00941 1.01971 0.95356 1.21194 0.96625 0.95454 0.80311 0.89056 1.22132 0.94192 1.01618 0.97508 1.20788 0.88434 0.91959 0.92574 1.42444 1.09064 1.29748 1.56229 1.19582 0.89568 1.05583 1.21892 0.91956 1.25564 1.02361 0.98439 1.00952 1.69861 1.34806 1.21278 1.36544 0.85086 0.79911 0.77627 0.77321 1.19224 1.21517 1.21664 1.84356 1.17607 1.38488 1.69832 0.89789 0.87207 0.86148 0.78145 0.85072 0.81447 0.87438 0.88539 0.87558 0.93297 0.89922 0.91149 0.94783 0.91729 0.90746 0.93860 0.90591 0.96653 0.99262 0.80396 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.51 71.23 0.75 -0.71 16 2 C 0.18 6.24 8.34 88.34 0.74 6.98 16 3 N -0.52 -18.99 11.29 -303.83 -3.43 -22.42 16 4 C -0.04 -1.42 11.80 83.39 0.98 -0.43 16 5 C -0.04 -1.11 5.88 24.79 0.15 -0.97 16 6 C -0.04 -0.91 4.63 29.10 0.13 -0.77 16 7 C 0.48 14.18 6.59 87.66 0.58 14.76 16 8 O -0.53 -22.88 9.42 -3.03 -0.03 -22.91 16 9 N -0.60 -13.49 2.93 -795.82 -2.34 -15.83 16 10 C 0.10 1.11 6.30 86.22 0.54 1.65 16 11 C -0.13 -1.55 6.06 30.53 0.19 -1.36 16 12 C -0.11 -1.54 5.17 30.62 0.16 -1.38 16 13 C -0.11 -2.45 1.93 -10.72 -0.02 -2.47 16 14 H 0.05 1.49 6.14 -2.39 -0.01 1.48 16 15 C -0.14 -3.22 8.97 71.98 0.65 -2.58 16 16 C 0.17 4.35 2.67 44.97 0.12 4.47 16 17 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.12 -4.51 4.16 30.60 0.13 -4.38 16 19 C 0.19 9.01 4.23 86.38 0.37 9.37 16 20 N -0.73 -43.94 5.53 -343.44 -1.90 -45.84 16 21 C -0.23 -14.91 9.99 84.03 0.84 -14.07 16 22 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 24 N -0.97 -65.82 13.06 21.65 0.28 -65.53 16 25 Si 0.97 50.32 29.55 68.60 2.03 52.35 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 28 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 29 O -0.22 -7.86 10.78 -3.76 -0.04 -7.90 16 30 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.20 5.07 8.06 -2.91 -0.02 5.04 16 34 H 0.13 2.04 7.52 -2.39 -0.02 2.03 16 35 H 0.17 1.76 8.08 -2.39 -0.02 1.74 16 36 H 0.11 0.67 5.96 -2.39 -0.01 0.66 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.03 0.98 6.80 -2.39 -0.02 0.96 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.68 7.03 -2.39 -0.02 1.66 16 46 H 0.08 3.38 5.74 -20.17 -0.12 3.26 16 47 H 0.02 0.79 5.31 -2.39 -0.01 0.78 16 48 H -0.01 -0.49 6.61 -2.39 -0.02 -0.51 16 49 H 0.37 23.61 7.67 -92.72 -0.71 22.90 16 50 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -92.03 387.28 1.47 -90.56 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.14 Total: 34.16 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.76 Total: 3.36 kcal Atomic # 7 Polarization: -142.23 SS G_CDS: -7.38 Total: -149.61 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.81 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.03 Total: 52.35 kcal Total: -92.03 1.47 -90.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692000322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.935 kcal (2) G-P(sol) polarization free energy of solvation -92.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds