Wall clock time and date at job start Tue Mar 31 2020 19:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47359 * 2 1 4 4 C 1.38635 * 120.46866 * 261.54651 * 3 2 1 5 5 C 1.38586 * 118.48595 * 180.02562 * 4 3 2 6 6 C 1.38602 * 119.35236 * 0.02562 * 5 4 3 7 7 N 1.31503 * 120.89747 * 359.74436 * 6 5 4 8 8 C 1.32742 * 121.64425 * 0.51907 * 7 6 5 9 9 C 1.48168 * 119.72006 * 179.75159 * 8 7 6 10 10 O 1.21514 * 119.99984 * 253.48465 * 9 8 7 11 11 N 1.34777 * 119.99572 * 73.48779 * 9 8 7 12 12 C 1.46495 * 120.00078 * 5.24690 * 11 9 8 13 13 C 1.46508 * 119.99593 * 185.25420 * 11 9 8 14 14 C 1.52998 * 109.46964 * 269.99530 * 13 11 9 15 15 O 1.42902 * 109.47198 * 65.00018 * 14 13 11 16 16 C 1.42898 * 114.00453 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47503 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47171 * 64.99908 * 17 16 15 19 19 C 1.46505 * 119.99914 * 270.00241 * 18 17 16 20 20 C 1.36935 * 119.99910 * 90.00144 * 18 17 16 21 21 H 1.07997 * 120.00337 * 32.07965 * 20 18 17 22 22 C 1.38813 * 120.00182 * 212.07681 * 20 18 17 23 23 N 1.31623 * 119.99781 * 6.19109 * 22 20 18 24 24 Si 1.86801 * 120.00235 * 186.19062 * 22 20 18 25 25 H 1.48498 * 109.46845 * 60.00113 * 24 22 20 26 26 H 1.48499 * 109.46924 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47071 * 300.00160 * 24 22 20 28 28 H 1.09006 * 109.47327 * 59.99822 * 1 2 3 29 29 H 1.09000 * 109.47857 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47060 * 300.00116 * 1 2 3 31 31 H 1.09005 * 109.47060 * 239.99884 * 2 1 3 32 32 H 1.09004 * 109.47115 * 120.00679 * 2 1 3 33 33 H 1.07995 * 120.75387 * 0.05208 * 4 3 2 34 34 H 1.07996 * 120.31964 * 179.97438 * 5 4 3 35 35 H 1.07991 * 119.54879 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47397 * 265.24273 * 12 11 9 37 37 H 1.08998 * 109.47385 * 25.25007 * 12 11 9 38 38 H 1.09006 * 109.46881 * 145.24714 * 12 11 9 39 39 H 1.08997 * 109.46912 * 29.99781 * 13 11 9 40 40 H 1.09002 * 109.46995 * 149.99809 * 13 11 9 41 41 H 1.08999 * 109.47130 * 185.00287 * 14 13 11 42 42 H 1.09000 * 109.47011 * 305.00655 * 14 13 11 43 43 H 1.09003 * 109.46700 * 300.00506 * 16 15 14 44 44 H 1.09001 * 109.46966 * 60.00425 * 16 15 14 45 45 H 1.08998 * 109.47484 * 185.00167 * 17 16 15 46 46 H 1.09007 * 109.47332 * 305.00108 * 17 16 15 47 47 H 1.08993 * 109.47129 * 94.68101 * 19 18 17 48 48 H 1.09010 * 109.46790 * 214.67523 * 19 18 17 49 49 H 1.08997 * 109.47061 * 334.67459 * 19 18 17 50 50 H 0.97002 * 120.00081 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4323 2.0250 -1.1819 5 6 2.8879 3.3330 -1.1344 6 6 2.9307 3.9937 0.0832 7 7 2.5409 3.3979 1.1889 8 6 2.1029 2.1449 1.1875 9 6 1.6793 1.5134 2.4592 10 8 2.3825 0.6727 2.9839 11 7 0.5140 1.8715 3.0340 12 6 -0.3878 2.7985 2.3458 13 6 0.1492 1.3338 4.3471 14 6 -0.6352 0.0328 4.1654 15 8 0.2113 -0.9551 3.5742 16 6 -0.4275 -2.2155 3.3608 17 6 0.5671 -3.1906 2.7278 18 7 1.6535 -3.4618 3.6724 19 6 2.8529 -2.6204 3.6705 20 6 1.5480 -4.5017 4.5571 21 1 1.0048 -5.3931 4.2803 22 6 2.1394 -4.4101 5.8096 23 7 2.6960 -3.2809 6.1936 24 14 2.1453 -5.8895 6.9501 25 1 2.8606 -7.0151 6.2971 26 1 2.8324 -5.5345 8.2178 27 1 0.7468 -6.2948 7.2424 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 2.3894 1.4887 -2.1183 34 1 3.2072 3.8322 -2.0373 35 1 3.2856 5.0128 0.1240 36 1 -0.1995 3.8142 2.6937 37 1 -0.2136 2.7444 1.2711 38 1 -1.4213 2.5266 2.5604 39 1 1.0535 1.1356 4.9224 40 1 -0.4676 2.0589 4.8780 41 1 -0.9828 -0.3204 5.1362 42 1 -1.4919 0.2128 3.5161 43 1 -0.7705 -2.6151 4.3151 44 1 -1.2802 -2.0825 2.6950 45 1 0.0570 -4.1224 2.4835 46 1 0.9775 -2.7518 1.8183 47 1 2.7449 -1.8322 4.4154 48 1 3.7245 -3.2297 3.9101 49 1 2.9817 -2.1737 2.6847 50 1 3.1095 -3.2170 7.0687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692097679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:22 Heat of formation + Delta-G solvation = -37.397487 kcal Electronic energy + Delta-G solvation = -31291.326380 eV Core-core repulsion = 27319.084064 eV Total energy + Delta-G solvation = -3972.242316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82382 -40.06249 -38.75316 -37.17498 -36.33809 -35.66250 -33.52820 -33.15529 -31.40245 -30.67317 -29.50332 -27.75602 -27.56670 -25.92883 -25.12973 -24.77761 -23.50240 -22.39858 -22.09740 -20.69435 -18.74689 -18.56436 -17.93647 -17.53416 -17.27929 -16.90775 -16.71038 -16.28342 -16.14517 -15.68870 -15.29246 -15.13202 -14.99381 -14.82240 -14.65179 -14.44839 -14.08620 -13.98898 -13.82449 -13.62417 -13.53736 -13.30375 -13.09766 -13.03637 -12.79444 -12.62006 -12.56631 -12.46821 -12.27322 -12.24286 -12.06760 -11.90125 -11.77042 -11.61225 -11.11859 -10.75097 -10.60055 -10.38413 -10.22731 -9.89185 -9.62115 -8.57874 -7.73633 -5.34339 -0.06697 0.29721 1.44100 1.47880 1.54360 1.64228 1.96642 2.52476 2.72247 3.01913 3.31946 3.36230 3.62080 3.80275 3.83222 4.00653 4.08297 4.16059 4.19288 4.21275 4.35576 4.38216 4.43794 4.47554 4.51357 4.57459 4.58769 4.61241 4.67954 4.72203 4.81620 4.81940 4.95473 4.98571 5.00963 5.02244 5.12158 5.16481 5.20177 5.28586 5.35747 5.37478 5.56519 5.67091 5.70842 5.96680 6.36966 6.41679 6.65841 6.87403 7.21579 7.24791 7.92561 8.45730 9.26562 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.003489 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.810657 B = 8023.235545 C = 8286.463399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.103 4.103 4 C -0.075 4.075 5 C -0.142 4.142 6 C 0.084 3.916 7 N -0.486 5.486 8 C 0.076 3.924 9 C 0.570 3.430 10 O -0.541 6.541 11 N -0.601 5.601 12 C 0.085 3.915 13 C 0.126 3.874 14 C 0.043 3.957 15 O -0.371 6.371 16 C 0.055 3.945 17 C 0.153 3.847 18 N -0.607 5.607 19 C 0.213 3.787 20 C -0.274 4.274 21 H 0.069 0.931 22 C -0.047 4.047 23 N -0.930 5.930 24 Si 0.969 3.031 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.271 1.271 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.015 0.985 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.006 0.994 48 H -0.009 1.009 49 H 0.004 0.996 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 17.902 -18.108 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.162 4.162 6 C -0.075 4.075 7 N -0.197 5.197 8 C -0.063 4.063 9 C 0.356 3.644 10 O -0.416 6.416 11 N -0.334 5.334 12 C -0.057 4.057 13 C 0.003 3.997 14 C -0.035 4.035 15 O -0.289 6.289 16 C -0.024 4.024 17 C 0.027 3.973 18 N -0.330 5.330 19 C 0.068 3.932 20 C -0.404 4.404 21 H 0.087 0.913 22 C -0.243 4.243 23 N -0.575 5.575 24 Si 0.796 3.204 25 H -0.202 1.202 26 H -0.223 1.223 27 H -0.197 1.197 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.187 0.813 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.147 0.853 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.010 0.990 49 H 0.023 0.977 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.485 17.968 -16.914 26.095 hybrid contribution 0.147 -1.283 0.709 1.473 sum -8.338 16.685 -16.205 24.709 Atomic orbital electron populations 1.21641 0.93015 1.02415 1.01949 1.20569 0.97766 0.91434 1.03046 1.20961 0.98934 0.97449 0.93263 1.21883 0.94914 0.95480 0.97825 1.22731 0.98025 0.94796 1.00614 1.23406 0.95473 1.01249 0.87340 1.67590 1.10369 1.08663 1.33087 1.20755 1.00709 0.91652 0.93147 1.18325 0.81522 0.80871 0.83685 1.90950 1.54704 1.32321 1.63628 1.47663 1.19493 1.46491 1.19789 1.21884 0.94114 0.92703 0.96960 1.21512 1.00019 0.94024 0.84117 1.22935 0.93673 0.89533 0.97328 1.88182 1.38153 1.20761 1.81853 1.23114 0.95915 0.85260 0.98139 1.21010 0.88992 0.95562 0.91745 1.43917 1.15237 1.33903 1.39930 1.20096 0.86791 0.92102 0.94256 1.19465 1.33006 0.94459 0.93479 0.91328 1.26098 1.00876 0.99036 0.98268 1.70301 1.41581 1.26039 1.19531 0.85345 0.77999 0.79155 0.77890 1.20246 1.22272 1.19684 0.90607 0.92119 0.93683 0.88867 0.93562 0.81290 0.80247 0.79355 0.91463 0.91697 0.88776 0.93143 0.85256 0.93916 0.91643 0.96635 0.92537 0.91420 0.93430 0.97573 0.99010 0.97725 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.86 71.98 0.71 -2.23 16 2 C -0.09 -2.38 5.57 29.85 0.17 -2.22 16 3 C -0.10 -2.58 5.18 -19.52 -0.10 -2.68 16 4 C -0.08 -1.24 9.82 22.45 0.22 -1.02 16 5 C -0.14 -1.83 10.11 22.44 0.23 -1.61 16 6 C 0.08 1.47 11.18 84.83 0.95 2.42 16 7 N -0.49 -13.06 10.29 -184.92 -1.90 -14.96 16 8 C 0.08 2.27 4.59 41.89 0.19 2.46 16 9 C 0.57 20.77 5.32 86.88 0.46 21.24 16 10 O -0.54 -26.19 14.95 8.82 0.13 -26.06 16 11 N -0.60 -17.50 2.65 -849.82 -2.25 -19.75 16 12 C 0.09 1.62 9.58 127.77 1.22 2.85 16 13 C 0.13 3.83 5.87 86.38 0.51 4.33 16 14 C 0.04 1.42 6.28 71.98 0.45 1.87 16 15 O -0.37 -15.88 8.47 -136.40 -1.16 -17.03 16 16 C 0.05 2.25 6.28 71.98 0.45 2.70 16 17 C 0.15 6.87 6.11 86.38 0.53 7.39 16 18 N -0.61 -34.11 2.86 -726.94 -2.08 -36.18 16 19 C 0.21 12.70 8.65 127.77 1.11 13.81 16 20 C -0.27 -16.20 9.57 84.03 0.80 -15.40 16 21 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 22 C -0.05 -2.82 5.24 84.86 0.44 -2.37 16 23 N -0.93 -60.40 10.93 21.65 0.24 -60.16 16 24 Si 0.97 47.68 29.56 68.60 2.03 49.71 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.11 6.27 -2.38 -0.01 1.09 16 31 H 0.09 2.00 8.04 -2.38 -0.02 1.98 16 32 H 0.05 1.72 6.88 -2.38 -0.02 1.70 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.25 6.47 -2.39 -0.02 1.23 16 38 H 0.09 1.29 8.11 -2.38 -0.02 1.27 16 39 H 0.05 2.01 7.50 -2.39 -0.02 1.99 16 40 H 0.13 2.69 8.07 -2.39 -0.02 2.67 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 2.78 8.04 -2.39 -0.02 2.76 16 46 H 0.05 2.03 7.86 -2.38 -0.02 2.01 16 47 H 0.01 0.40 7.21 -2.39 -0.02 0.38 16 48 H -0.01 -0.57 7.73 -2.38 -0.02 -0.59 16 49 H 0.00 0.24 7.84 -2.39 -0.02 0.22 16 50 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -86.71 407.60 4.26 -82.45 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.91 Total: 10.44 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 8.34 Total: 31.56 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -6.00 Total: -131.06 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.02 Total: -43.10 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -86.71 4.26 -82.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692097679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.052 kcal (2) G-P(sol) polarization free energy of solvation -86.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds