Wall clock time and date at job start Tue Mar 31 2020 19:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47622 * 2 1 4 4 N 1.34658 * 125.80043 * 265.02414 * 3 2 1 5 5 H 0.97005 * 124.85125 * 359.71066 * 4 3 2 6 6 C 1.36447 * 110.29921 * 179.97438 * 4 3 2 7 7 C 1.34489 * 108.85603 * 359.97438 * 6 4 3 8 8 C 1.36763 * 125.80091 * 84.99753 * 3 2 1 9 9 C 1.47263 * 126.94374 * 359.97438 * 8 3 2 10 10 O 1.21630 * 120.00163 * 315.17800 * 9 8 3 11 11 N 1.34777 * 120.00118 * 135.18452 * 9 8 3 12 12 C 1.46924 * 120.63109 * 3.63919 * 11 9 8 13 13 C 1.52760 * 109.01121 * 233.58764 * 12 11 9 14 14 C 1.53044 * 109.38226 * 305.59030 * 13 12 11 15 15 C 1.53038 * 109.53783 * 61.23831 * 14 13 12 16 16 H 1.08999 * 109.52406 * 58.60165 * 15 14 13 17 17 N 1.46500 * 109.49708 * 178.68425 * 15 14 13 18 18 C 1.36938 * 120.00118 * 59.83783 * 17 15 14 19 19 H 1.08005 * 119.99895 * 320.93220 * 18 17 15 20 20 C 1.38813 * 119.99714 * 140.93277 * 18 17 15 21 21 N 1.31616 * 120.00382 * 339.46426 * 20 18 17 22 22 Si 1.86802 * 119.99502 * 159.46345 * 20 18 17 23 23 H 1.48512 * 109.46909 * 90.00149 * 22 20 18 24 24 H 1.48503 * 109.47083 * 209.99704 * 22 20 18 25 25 H 1.48495 * 109.47563 * 329.99927 * 22 20 18 26 26 C 1.46497 * 119.99859 * 239.83881 * 17 15 14 27 27 C 1.53004 * 109.47259 * 84.41147 * 26 17 15 28 28 O 1.42897 * 109.47203 * 64.99605 * 27 26 17 29 29 C 1.46931 * 120.62777 * 183.92372 * 11 9 8 30 30 H 1.09004 * 109.46900 * 60.00063 * 1 2 3 31 31 H 1.08996 * 109.47669 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46993 * 300.00246 * 1 2 3 33 33 H 1.09007 * 109.47035 * 239.99535 * 2 1 3 34 34 H 1.09004 * 109.46900 * 119.99937 * 2 1 3 35 35 H 1.07991 * 125.57372 * 180.02562 * 6 4 3 36 36 H 1.07994 * 126.83810 * 180.02562 * 7 6 4 37 37 H 1.09004 * 109.58515 * 353.42783 * 12 11 9 38 38 H 1.09003 * 109.58232 * 113.84738 * 12 11 9 39 39 H 1.08999 * 109.56626 * 185.55590 * 13 12 11 40 40 H 1.09001 * 109.38378 * 65.51697 * 13 12 11 41 41 H 1.09005 * 109.45790 * 301.22104 * 14 13 12 42 42 H 1.08994 * 109.44903 * 181.25337 * 14 13 12 43 43 H 0.96993 * 119.99916 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47586 * 204.40940 * 26 17 15 45 45 H 1.09004 * 109.47397 * 324.41399 * 26 17 15 46 46 H 1.08997 * 109.47421 * 184.99872 * 27 26 17 47 47 H 1.09006 * 109.46955 * 304.99969 * 27 26 17 48 48 H 0.96700 * 114.00448 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.58600 * 246.14855 * 29 11 9 50 50 H 1.08999 * 109.58533 * 6.44050 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3844 2.1318 -1.0880 5 1 2.3558 1.8010 -1.9995 6 6 2.7924 3.3822 -0.7248 7 6 2.7079 3.4955 0.6126 8 6 2.2080 2.2073 1.1050 9 6 1.9462 1.8365 2.5059 10 8 0.9210 1.2512 2.7988 11 7 2.8426 2.1458 3.4637 12 6 4.0471 2.9220 3.1391 13 6 5.2771 2.1600 3.6289 14 6 5.1172 1.8400 5.1169 15 6 3.8855 0.9548 5.3206 16 1 3.9963 0.0378 4.7419 17 7 3.7512 0.6232 6.7412 18 6 3.6003 1.6218 7.6661 19 1 4.1570 2.5416 7.5633 20 6 2.7320 1.4517 8.7357 21 7 1.7731 0.5527 8.6684 22 14 2.9247 2.4988 10.2706 23 1 2.1147 3.7357 10.1309 24 1 2.4583 1.7327 11.4542 25 1 4.3541 2.8605 10.4470 26 6 3.7782 -0.7766 7.1724 27 6 5.2296 -1.2303 7.3413 28 8 5.8378 -0.4952 8.4051 29 6 2.6369 1.7080 4.8511 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.1275 4.1548 -1.4008 36 1 2.9586 4.3623 1.2061 37 1 4.1116 3.0624 2.0600 38 1 4.0009 3.8922 3.6337 39 1 6.1676 2.7711 3.4819 40 1 5.3757 1.2319 3.0657 41 1 4.9944 2.7674 5.6766 42 1 6.0040 1.3158 5.4728 43 1 1.1662 0.4342 9.4157 44 1 3.2541 -0.8742 8.1232 45 1 3.2885 -1.3975 6.4222 46 1 5.2527 -2.2946 7.5755 47 1 5.7767 -1.0500 6.4159 48 1 6.7610 -0.7316 8.5692 49 1 2.4734 2.5771 5.4881 50 1 1.7698 1.0494 4.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692233479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:23 Heat of formation + Delta-G solvation = -16.947456 kcal Electronic energy + Delta-G solvation = -30709.484046 eV Core-core repulsion = 26738.128510 eV Total energy + Delta-G solvation = -3971.355536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.33318 -39.18631 -37.19298 -36.05739 -34.51907 -33.63388 -32.15200 -31.19037 -30.96872 -29.42694 -28.32063 -27.14500 -25.10501 -24.08335 -23.34234 -22.30687 -21.68942 -20.77050 -20.36341 -19.43692 -17.96462 -17.60268 -16.56509 -16.34135 -15.93583 -15.28475 -14.97021 -14.65009 -14.38697 -14.33499 -14.05983 -13.85427 -13.65243 -13.52786 -13.36040 -13.23315 -12.86051 -12.61861 -12.41890 -12.33500 -12.18616 -11.96075 -11.76802 -11.38573 -11.22940 -11.09521 -10.96635 -10.79178 -10.58031 -10.54434 -10.32920 -10.00639 -9.92237 -9.76077 -9.48699 -9.35268 -9.04877 -8.69796 -8.30758 -8.22443 -7.93238 -6.41660 -5.64899 -3.20329 1.99965 2.45748 3.07492 3.47643 3.49299 3.55166 3.61026 3.77643 4.62864 4.67742 4.85348 5.01497 5.15014 5.20201 5.29974 5.31884 5.41952 5.44378 5.51242 5.55664 5.61599 5.65343 5.79528 5.82954 5.92736 5.98094 5.99877 6.09505 6.10956 6.13554 6.26506 6.32488 6.38730 6.43167 6.45247 6.63513 6.72816 6.77275 6.81339 6.88852 6.92652 7.08347 7.20492 7.30148 7.39020 7.70392 7.97940 8.06609 8.51101 8.70516 8.80267 9.32126 9.95422 10.52734 11.38078 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003310 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.759537 B = 8457.495102 C = 8529.376824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C 0.088 3.912 4 N -0.555 5.555 5 H 0.412 0.588 6 C -0.020 4.020 7 C -0.170 4.170 8 C -0.213 4.213 9 C 0.583 3.417 10 O -0.546 6.546 11 N -0.600 5.600 12 C 0.101 3.899 13 C -0.131 4.131 14 C -0.125 4.125 15 C 0.168 3.832 16 H 0.046 0.954 17 N -0.567 5.567 18 C -0.241 4.241 19 H 0.056 0.944 20 C 0.019 3.981 21 N -0.890 5.890 22 Si 0.895 3.105 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.149 3.851 27 C 0.059 3.941 28 O -0.544 6.544 29 C 0.110 3.890 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.019 0.981 47 H 0.022 0.978 48 H 0.349 0.651 49 H 0.073 0.927 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 1.207 -20.156 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.029 4.029 4 N -0.150 5.150 5 H 0.248 0.752 6 C -0.147 4.147 7 C -0.194 4.194 8 C -0.223 4.223 9 C 0.372 3.628 10 O -0.425 6.425 11 N -0.332 5.332 12 C -0.022 4.022 13 C -0.170 4.170 14 C -0.164 4.164 15 C 0.059 3.941 16 H 0.064 0.936 17 N -0.287 5.287 18 C -0.371 4.371 19 H 0.074 0.926 20 C -0.181 4.181 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.022 3.978 27 C -0.021 4.021 28 O -0.345 6.345 29 C -0.013 4.013 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.040 0.960 48 H 0.191 0.809 49 H 0.092 0.908 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.621 1.101 -19.937 20.495 hybrid contribution 0.855 0.249 0.384 0.970 sum 5.476 1.350 -19.552 20.349 Atomic orbital electron populations 1.21763 0.93749 1.01998 1.02990 1.20139 0.97051 0.89155 1.03038 1.20180 1.02004 0.95004 0.85672 1.41486 1.52919 1.12053 1.08547 0.75156 1.21663 1.08582 0.88051 0.96437 1.22039 1.06280 0.97598 0.93529 1.20243 1.13347 0.96089 0.92604 1.17443 0.82970 0.78598 0.83824 1.90751 1.26159 1.42938 1.82662 1.48144 1.21714 1.53707 1.09644 1.21856 0.84583 0.94288 1.01457 1.21846 0.96967 1.00093 0.98074 1.21962 0.99610 1.01486 0.93389 1.20634 0.91769 0.94779 0.86885 0.93608 1.43632 1.83626 1.01977 0.99420 1.18728 1.17893 0.97390 1.03056 0.92648 1.25112 0.94601 0.98204 1.00202 1.70007 1.15795 1.36789 1.30684 0.86433 0.77830 0.79634 0.83562 1.21698 1.21801 1.20369 1.20944 0.90386 0.84682 1.01755 1.23099 0.98630 0.92205 0.88164 1.86851 1.27533 1.65362 1.54735 1.22280 1.00525 1.00426 0.78089 0.93573 0.92323 0.90175 0.91634 0.89348 0.81598 0.83663 0.89038 0.92032 0.91758 0.92453 0.91643 0.92651 0.93772 0.88370 0.94502 0.96274 0.95973 0.80857 0.90844 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 37.16 0.37 -1.34 16 2 C -0.06 -0.63 5.99 -27.88 -0.17 -0.79 16 3 C 0.09 1.07 6.43 -81.89 -0.53 0.54 16 4 N -0.55 -4.85 5.90 -9.11 -0.05 -4.91 16 5 H 0.41 2.20 8.96 -40.82 -0.37 1.83 16 6 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 7 C -0.17 -1.98 8.66 -37.49 -0.32 -2.31 16 8 C -0.21 -3.12 5.37 -103.35 -0.56 -3.68 16 9 C 0.58 10.78 7.33 -12.59 -0.09 10.68 16 10 O -0.55 -11.93 14.97 5.25 0.08 -11.85 16 11 N -0.60 -10.80 2.98 -174.35 -0.52 -11.32 16 12 C 0.10 1.46 5.81 -3.93 -0.02 1.44 16 13 C -0.13 -1.87 6.06 -26.83 -0.16 -2.04 16 14 C -0.12 -2.26 5.11 -26.69 -0.14 -2.40 16 15 C 0.17 3.52 2.78 -67.81 -0.19 3.33 16 16 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 17 N -0.57 -13.85 2.31 -165.52 -0.38 -14.23 16 18 C -0.24 -6.50 7.88 -15.06 -0.12 -6.62 16 19 H 0.06 1.52 6.90 -52.48 -0.36 1.15 16 20 C 0.02 0.53 4.90 -17.43 -0.09 0.44 16 21 N -0.89 -26.09 11.62 55.49 0.64 -25.45 16 22 Si 0.90 22.47 29.60 -169.99 -5.03 17.44 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.15 3.53 5.56 -4.04 -0.02 3.51 16 27 C 0.06 1.18 7.39 37.16 0.27 1.45 16 28 O -0.54 -11.41 13.40 -35.23 -0.47 -11.88 16 29 C 0.11 2.37 5.76 -3.71 -0.02 2.35 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.20 6.84 -51.93 -0.36 0.85 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.15 1.53 7.43 -52.49 -0.39 1.14 16 37 H 0.09 1.15 4.27 -51.93 -0.22 0.93 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.28 7.06 -51.93 -0.37 0.92 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 44 H 0.10 2.68 5.69 -51.93 -0.30 2.39 16 45 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.35 5.32 9.12 45.56 0.42 5.73 16 49 H 0.07 1.74 7.50 -51.93 -0.39 1.35 16 50 H 0.09 2.15 7.02 -51.93 -0.36 1.78 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -34.21 393.31 -9.09 -43.30 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.30 Total: 8.77 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.98 Total: 4.20 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.31 Total: -55.90 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.39 Total: -23.73 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.21 -9.09 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.353 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds