Wall clock time and date at job start Tue Mar 31 2020 19:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47622 * 2 1 4 4 N 1.34658 * 125.80043 * 265.02414 * 3 2 1 5 5 H 0.97005 * 124.85125 * 359.71066 * 4 3 2 6 6 C 1.36447 * 110.29921 * 179.97438 * 4 3 2 7 7 C 1.34489 * 108.85603 * 359.97438 * 6 4 3 8 8 C 1.36763 * 125.80091 * 84.99753 * 3 2 1 9 9 C 1.47263 * 126.94374 * 359.97438 * 8 3 2 10 10 O 1.21630 * 120.00163 * 315.17800 * 9 8 3 11 11 N 1.34777 * 120.00118 * 135.18452 * 9 8 3 12 12 C 1.46924 * 120.63109 * 3.63919 * 11 9 8 13 13 C 1.52760 * 109.01121 * 233.58764 * 12 11 9 14 14 C 1.53044 * 109.38226 * 305.59030 * 13 12 11 15 15 C 1.53038 * 109.53783 * 61.23831 * 14 13 12 16 16 H 1.08999 * 109.52406 * 58.60165 * 15 14 13 17 17 N 1.46500 * 109.49708 * 178.68425 * 15 14 13 18 18 C 1.36938 * 120.00118 * 59.83783 * 17 15 14 19 19 H 1.08005 * 119.99895 * 320.93220 * 18 17 15 20 20 C 1.38813 * 119.99714 * 140.93277 * 18 17 15 21 21 N 1.31616 * 120.00382 * 339.46426 * 20 18 17 22 22 Si 1.86802 * 119.99502 * 159.46345 * 20 18 17 23 23 H 1.48512 * 109.46909 * 90.00149 * 22 20 18 24 24 H 1.48503 * 109.47083 * 209.99704 * 22 20 18 25 25 H 1.48495 * 109.47563 * 329.99927 * 22 20 18 26 26 C 1.46497 * 119.99859 * 239.83881 * 17 15 14 27 27 C 1.53004 * 109.47259 * 84.41147 * 26 17 15 28 28 O 1.42897 * 109.47203 * 64.99605 * 27 26 17 29 29 C 1.46931 * 120.62777 * 183.92372 * 11 9 8 30 30 H 1.09004 * 109.46900 * 60.00063 * 1 2 3 31 31 H 1.08996 * 109.47669 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46993 * 300.00246 * 1 2 3 33 33 H 1.09007 * 109.47035 * 239.99535 * 2 1 3 34 34 H 1.09004 * 109.46900 * 119.99937 * 2 1 3 35 35 H 1.07991 * 125.57372 * 180.02562 * 6 4 3 36 36 H 1.07994 * 126.83810 * 180.02562 * 7 6 4 37 37 H 1.09004 * 109.58515 * 353.42783 * 12 11 9 38 38 H 1.09003 * 109.58232 * 113.84738 * 12 11 9 39 39 H 1.08999 * 109.56626 * 185.55590 * 13 12 11 40 40 H 1.09001 * 109.38378 * 65.51697 * 13 12 11 41 41 H 1.09005 * 109.45790 * 301.22104 * 14 13 12 42 42 H 1.08994 * 109.44903 * 181.25337 * 14 13 12 43 43 H 0.96993 * 119.99916 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47586 * 204.40940 * 26 17 15 45 45 H 1.09004 * 109.47397 * 324.41399 * 26 17 15 46 46 H 1.08997 * 109.47421 * 184.99872 * 27 26 17 47 47 H 1.09006 * 109.46955 * 304.99969 * 27 26 17 48 48 H 0.96700 * 114.00448 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.58600 * 246.14855 * 29 11 9 50 50 H 1.08999 * 109.58533 * 6.44050 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3844 2.1318 -1.0880 5 1 2.3558 1.8010 -1.9995 6 6 2.7924 3.3822 -0.7248 7 6 2.7079 3.4955 0.6126 8 6 2.2080 2.2073 1.1050 9 6 1.9462 1.8365 2.5059 10 8 0.9210 1.2512 2.7988 11 7 2.8426 2.1458 3.4637 12 6 4.0471 2.9220 3.1391 13 6 5.2771 2.1600 3.6289 14 6 5.1172 1.8400 5.1169 15 6 3.8855 0.9548 5.3206 16 1 3.9963 0.0378 4.7419 17 7 3.7512 0.6232 6.7412 18 6 3.6003 1.6218 7.6661 19 1 4.1570 2.5416 7.5633 20 6 2.7320 1.4517 8.7357 21 7 1.7731 0.5527 8.6684 22 14 2.9247 2.4988 10.2706 23 1 2.1147 3.7357 10.1309 24 1 2.4583 1.7327 11.4542 25 1 4.3541 2.8605 10.4470 26 6 3.7782 -0.7766 7.1724 27 6 5.2296 -1.2303 7.3413 28 8 5.8378 -0.4952 8.4051 29 6 2.6369 1.7080 4.8511 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.1275 4.1548 -1.4008 36 1 2.9586 4.3623 1.2061 37 1 4.1116 3.0624 2.0600 38 1 4.0009 3.8922 3.6337 39 1 6.1676 2.7711 3.4819 40 1 5.3757 1.2319 3.0657 41 1 4.9944 2.7674 5.6766 42 1 6.0040 1.3158 5.4728 43 1 1.1662 0.4342 9.4157 44 1 3.2541 -0.8742 8.1232 45 1 3.2885 -1.3975 6.4222 46 1 5.2527 -2.2946 7.5755 47 1 5.7767 -1.0500 6.4159 48 1 6.7610 -0.7316 8.5692 49 1 2.4734 2.5771 5.4881 50 1 1.7698 1.0494 4.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692233479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:21 Heat of formation + Delta-G solvation = -41.667088 kcal Electronic energy + Delta-G solvation = -30710.555970 eV Core-core repulsion = 26738.128510 eV Total energy + Delta-G solvation = -3972.427460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.24577 -40.60626 -38.83484 -37.63874 -36.23326 -34.55158 -33.82631 -32.81882 -32.20679 -30.95145 -29.27184 -28.95117 -26.49308 -25.96833 -24.36990 -23.79236 -22.91085 -22.06404 -21.61056 -21.07731 -19.19982 -18.51493 -18.25361 -18.16520 -17.28984 -16.79441 -16.65205 -16.06521 -16.00429 -15.49353 -15.28055 -15.23330 -15.05183 -14.85274 -14.61993 -14.54876 -14.18968 -14.07681 -13.84805 -13.76204 -13.39735 -13.22358 -13.08465 -12.98233 -12.88936 -12.73007 -12.45181 -12.30018 -12.20566 -11.90652 -11.87662 -11.78392 -11.57359 -11.56265 -11.26770 -10.80038 -10.62869 -10.41256 -9.66981 -9.46945 -9.04019 -8.44749 -7.75467 -5.34294 0.96312 1.45207 1.48188 1.58182 1.61807 2.02868 2.35887 2.51585 2.59197 3.36320 3.58034 3.80376 3.80985 3.88647 4.10956 4.12159 4.22308 4.25568 4.35436 4.40081 4.44483 4.49673 4.54393 4.56972 4.68864 4.70231 4.73143 4.81403 4.91377 4.93395 4.97653 5.01425 5.03612 5.06195 5.12967 5.13898 5.22122 5.28525 5.39762 5.48348 5.61123 5.67055 5.72292 5.80903 5.85601 6.07648 6.54938 6.65317 6.77764 7.20198 7.27385 7.37704 7.92957 8.46233 9.23560 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003310 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.759537 B = 8457.495102 C = 8529.376824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C 0.088 3.912 4 N -0.535 5.535 5 H 0.433 0.567 6 C 0.012 3.988 7 C -0.195 4.195 8 C -0.251 4.251 9 C 0.576 3.424 10 O -0.596 6.596 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.120 4.120 14 C -0.113 4.113 15 C 0.170 3.830 16 H 0.046 0.954 17 N -0.581 5.581 18 C -0.230 4.230 19 H 0.052 0.948 20 C -0.035 4.035 21 N -0.925 5.925 22 Si 0.950 3.050 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.273 1.273 26 C 0.143 3.857 27 C 0.073 3.927 28 O -0.573 6.573 29 C 0.128 3.872 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.213 0.787 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.246 0.754 44 H 0.060 0.940 45 H 0.035 0.965 46 H 0.047 0.953 47 H 0.039 0.961 48 H 0.376 0.624 49 H 0.044 0.956 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 2.384 -23.876 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.030 4.030 4 N -0.132 5.132 5 H 0.273 0.727 6 C -0.116 4.116 7 C -0.218 4.218 8 C -0.262 4.262 9 C 0.367 3.633 10 O -0.478 6.478 11 N -0.333 5.333 12 C -0.022 4.022 13 C -0.158 4.158 14 C -0.152 4.152 15 C 0.062 3.938 16 H 0.064 0.936 17 N -0.301 5.301 18 C -0.360 4.360 19 H 0.069 0.931 20 C -0.231 4.231 21 N -0.570 5.570 22 Si 0.780 3.220 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.198 1.198 26 C 0.017 3.983 27 C -0.007 4.007 28 O -0.378 6.378 29 C 0.003 3.997 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.171 0.829 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.222 0.778 49 H 0.062 0.938 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.595 2.295 -23.711 25.004 hybrid contribution -0.066 -0.127 1.419 1.427 sum 7.528 2.168 -22.292 23.629 Atomic orbital electron populations 1.21692 0.94273 1.02325 1.01763 1.20131 0.96552 0.89203 1.03461 1.20160 1.01482 0.95217 0.86131 1.41483 1.51233 1.11707 1.08752 0.72658 1.22295 1.05238 0.88204 0.95901 1.22182 1.07911 0.96699 0.95037 1.20071 1.16742 0.98706 0.90633 1.18187 0.82057 0.77492 0.85585 1.90718 1.28193 1.45198 1.83713 1.48184 1.23160 1.54062 1.07892 1.22137 0.82855 0.93844 1.03361 1.21802 0.98221 1.01045 0.94746 1.21786 0.97494 0.99653 0.96288 1.20742 0.92728 0.95326 0.85007 0.93571 1.43832 1.83891 1.01857 1.00533 1.18857 1.16462 0.97490 1.03215 0.93080 1.25742 0.94803 0.99760 1.02783 1.70151 1.16962 1.38878 1.30973 0.85558 0.77775 0.78207 0.80506 1.21485 1.22338 1.19766 1.20884 0.93026 0.84626 0.99758 1.22793 0.95791 0.93280 0.88848 1.86761 1.29909 1.66100 1.55013 1.21741 0.99303 0.98221 0.80398 0.91514 0.91313 0.94490 0.87773 0.92261 0.77053 0.82950 0.86197 0.91519 0.88032 0.91896 0.93335 0.92494 0.94509 0.92164 0.94702 0.93539 0.94273 0.77776 0.93784 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.89 71.98 0.71 -2.58 16 2 C -0.06 -1.19 5.99 29.85 0.18 -1.01 16 3 C 0.09 1.98 6.43 41.78 0.27 2.24 16 4 N -0.54 -7.01 5.90 -182.73 -1.08 -8.09 16 5 H 0.43 2.30 8.96 -92.70 -0.83 1.47 16 6 C 0.01 0.15 11.89 83.12 0.99 1.14 16 7 C -0.19 -3.97 8.66 23.62 0.20 -3.77 16 8 C -0.25 -7.18 5.37 -19.04 -0.10 -7.28 16 9 C 0.58 22.31 7.33 86.62 0.63 22.94 16 10 O -0.60 -28.33 14.97 -4.13 -0.06 -28.39 16 11 N -0.60 -22.45 2.98 -823.77 -2.45 -24.90 16 12 C 0.10 2.72 5.81 86.22 0.50 3.22 16 13 C -0.12 -3.11 6.06 30.53 0.19 -2.93 16 14 C -0.11 -4.00 5.11 30.62 0.16 -3.84 16 15 C 0.17 7.35 2.78 45.07 0.13 7.47 16 16 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 17 N -0.58 -29.43 2.31 -677.58 -1.57 -30.99 16 18 C -0.23 -12.82 7.88 84.03 0.66 -12.16 16 19 H 0.05 2.87 6.90 -2.91 -0.02 2.85 16 20 C -0.03 -2.02 4.90 84.86 0.42 -1.60 16 21 N -0.92 -57.22 11.62 21.65 0.25 -56.97 16 22 Si 0.95 47.68 29.60 68.60 2.03 49.71 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 25 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 26 C 0.14 7.04 5.56 86.38 0.48 7.52 16 27 C 0.07 2.83 7.39 71.98 0.53 3.36 16 28 O -0.57 -23.45 13.40 -148.98 -2.00 -25.45 16 29 C 0.13 5.94 5.76 86.36 0.50 6.44 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.17 6.84 -2.39 -0.02 1.16 16 33 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 1.62 8.05 -2.38 -0.02 1.60 16 35 H 0.21 0.78 8.06 -2.92 -0.02 0.75 16 36 H 0.15 2.79 7.43 -2.91 -0.02 2.77 16 37 H 0.12 2.68 4.27 -2.38 -0.01 2.67 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.88 7.06 -2.38 -0.02 1.87 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.06 3.46 5.69 -2.39 -0.01 3.44 16 45 H 0.03 1.66 8.04 -2.39 -0.02 1.64 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.38 10.69 9.12 -74.06 -0.68 10.01 16 49 H 0.04 2.25 7.50 -2.39 -0.02 2.23 16 50 H 0.04 2.19 7.02 -2.39 -0.02 2.17 16 Total: -1.00 -82.41 393.31 1.02 -81.39 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.55 Total: 24.53 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 6.44 Total: 19.16 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -4.85 Total: -120.96 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -2.06 Total: -53.84 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -82.41 1.02 -81.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.719 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds