Wall clock time and date at job start Tue Mar 31 2020 19:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46955 * 2 1 4 4 C 1.38022 * 119.51029 * 125.00221 * 3 2 1 5 5 C 1.39925 * 119.13032 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.89291 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99666 * 321.57993 * 6 5 4 8 8 N 1.34769 * 119.99969 * 141.58359 * 6 5 4 9 9 C 1.46500 * 120.00351 * 5.06811 * 8 6 5 10 10 C 1.46497 * 119.99928 * 185.07441 * 8 6 5 11 11 C 1.53003 * 109.47302 * 89.99476 * 10 8 6 12 12 C 1.52998 * 109.47226 * 300.00305 * 11 10 8 13 13 C 1.53005 * 109.46877 * 60.00297 * 11 10 8 14 14 C 1.53004 * 109.47201 * 179.97438 * 11 10 8 15 15 N 1.46501 * 109.47151 * 180.02562 * 14 11 10 16 16 C 1.36930 * 120.00303 * 180.02562 * 15 14 11 17 17 H 1.08009 * 119.99528 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00479 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99514 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46908 * 120.00535 * 20 18 16 23 23 H 1.48500 * 109.47016 * 240.00027 * 20 18 16 24 24 C 1.39621 * 118.21528 * 359.97438 * 5 4 3 25 25 C 1.38849 * 118.95064 * 0.24999 * 24 5 4 26 26 O 1.35678 * 119.62282 * 179.75032 * 25 24 5 27 27 N 1.31880 * 119.51487 * 305.01666 * 3 2 1 28 28 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47200 * 300.00741 * 1 2 3 30 30 H 1.09007 * 109.46644 * 60.00321 * 1 2 3 31 31 H 1.09000 * 109.46901 * 239.99493 * 2 1 3 32 32 H 1.08999 * 109.46634 * 119.99975 * 2 1 3 33 33 H 1.08000 * 120.43734 * 359.97057 * 4 3 2 34 34 H 1.09004 * 109.46827 * 84.69095 * 9 8 6 35 35 H 1.08999 * 109.47647 * 204.69402 * 9 8 6 36 36 H 1.08996 * 109.47120 * 324.69820 * 9 8 6 37 37 H 1.08997 * 109.47415 * 209.99602 * 10 8 6 38 38 H 1.09000 * 109.47305 * 329.99932 * 10 8 6 39 39 H 1.08994 * 109.47339 * 59.99940 * 12 11 10 40 40 H 1.09004 * 109.47148 * 179.97438 * 12 11 10 41 41 H 1.09004 * 109.46858 * 299.99783 * 12 11 10 42 42 H 1.09000 * 109.46913 * 59.99833 * 13 11 10 43 43 H 1.08994 * 109.47157 * 180.02562 * 13 11 10 44 44 H 1.08996 * 109.46780 * 300.00127 * 13 11 10 45 45 H 1.09000 * 109.47480 * 300.00712 * 14 11 10 46 46 H 1.09009 * 109.46626 * 60.00520 * 14 11 10 47 47 H 0.97004 * 119.99850 * 359.97438 * 15 14 11 48 48 H 0.97008 * 119.99723 * 180.02562 * 19 18 16 49 49 H 1.08001 * 120.52010 * 179.97438 * 24 5 4 50 50 H 0.96704 * 114.00297 * 89.99988 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0130 7 8 4.1897 3.2665 3.1641 8 7 5.3041 4.4849 1.6795 9 6 5.3856 5.0174 0.3172 10 6 6.3012 4.8751 2.6793 11 6 7.4743 3.8936 2.6399 12 6 6.9690 2.4825 2.9473 13 6 8.1112 3.9156 1.2489 14 6 8.5160 4.3015 3.6837 15 7 9.6394 3.3620 3.6456 16 6 10.6990 3.5268 4.4971 17 1 10.7067 4.3498 5.1965 18 6 11.7633 2.6363 4.4613 19 7 11.7540 1.6338 3.6086 20 14 13.2091 2.8618 5.6225 21 1 12.9781 4.0557 6.4746 22 1 13.3452 1.6589 6.4827 23 1 14.4530 3.0493 4.8334 24 6 2.9207 4.0034 -0.0360 25 6 2.0353 3.5098 -0.9848 26 8 1.5857 4.3257 -1.9712 27 7 1.6280 2.2529 -0.9399 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2335 1.1436 1.7499 34 1 4.7421 5.8930 0.2303 35 1 6.4153 5.3002 0.0985 36 1 5.0598 4.2555 -0.3909 37 1 6.6612 5.8804 2.4604 38 1 5.8476 4.8594 3.6703 39 1 6.2272 2.1921 2.2034 40 1 7.8047 1.7831 2.9188 41 1 6.5153 2.4669 3.9383 42 1 8.4711 4.9209 1.0300 43 1 8.9465 3.2160 1.2207 44 1 7.3693 3.6252 0.5051 45 1 8.8758 5.3068 3.4644 46 1 8.0624 4.2861 4.6749 47 1 9.6323 2.6227 3.0176 48 1 12.4976 1.0113 3.5838 49 1 3.2530 5.0302 -0.0774 50 1 2.1356 4.3212 -2.7666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700443636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:29 Heat of formation + Delta-G solvation = -24.008488 kcal Electronic energy + Delta-G solvation = -29643.805374 eV Core-core repulsion = 25672.143648 eV Total energy + Delta-G solvation = -3971.661726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33427 -39.95526 -37.76584 -37.30872 -35.43595 -34.26539 -33.15004 -32.39371 -30.27642 -29.79969 -28.01337 -27.04134 -26.36530 -25.56665 -24.77988 -23.83347 -22.69217 -22.05854 -19.97216 -18.80812 -18.42943 -17.46944 -17.25365 -16.88220 -16.44807 -16.15237 -15.73120 -15.55146 -14.86951 -14.57811 -14.38325 -14.17609 -13.85288 -13.74072 -13.56006 -13.37669 -13.29480 -12.82761 -12.66625 -12.48809 -12.38773 -12.30337 -12.20137 -11.99979 -11.76065 -11.38398 -11.30970 -11.19372 -11.00003 -10.83398 -10.77612 -10.51002 -10.33389 -10.20589 -10.11956 -9.91632 -9.69763 -9.59017 -9.18685 -8.86044 -8.70117 -6.88588 -5.75221 -3.02701 0.43949 0.57744 2.46383 2.72399 3.16390 3.31884 3.43982 3.49830 3.51906 3.98822 4.11485 4.53674 4.57909 4.60950 4.74849 4.81785 4.89702 4.96342 5.02976 5.07343 5.12571 5.24086 5.34791 5.35996 5.39932 5.42590 5.55603 5.57822 5.63490 5.69261 5.76890 5.86493 5.90843 5.92841 6.05104 6.08081 6.09572 6.25136 6.34575 6.46121 6.55062 6.70771 6.74073 6.90742 6.92863 7.05088 7.15482 7.50894 7.72219 7.93509 8.44284 9.55571 10.14270 10.48998 11.47975 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002411 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.515263 B =11611.787059 C =12289.367982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.155 3.845 4 C -0.128 4.128 5 C -0.059 4.059 6 C 0.558 3.442 7 O -0.515 6.515 8 N -0.599 5.599 9 C 0.066 3.934 10 C 0.126 3.874 11 C -0.086 4.086 12 C -0.125 4.125 13 C -0.136 4.136 14 C 0.165 3.835 15 N -0.728 5.728 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.171 4.171 25 C 0.311 3.689 26 O -0.479 6.479 27 N -0.489 5.489 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.018 0.982 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.154 0.846 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.484 3.585 -13.302 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.017 3.983 4 C -0.149 4.149 5 C -0.070 4.070 6 C 0.345 3.655 7 O -0.390 6.390 8 N -0.331 5.331 9 C -0.077 4.077 10 C 0.003 3.997 11 C -0.087 4.087 12 C -0.183 4.183 13 C -0.194 4.194 14 C 0.037 3.963 15 N -0.373 5.373 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.192 4.192 25 C 0.132 3.868 26 O -0.286 6.286 27 N -0.209 5.209 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.171 0.829 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -22.437 3.384 -12.810 26.057 hybrid contribution 1.829 0.211 0.514 1.912 sum -20.608 3.595 -12.296 24.265 Atomic orbital electron populations 1.21683 0.93840 1.01959 1.02741 1.20562 0.97258 0.89639 1.03789 1.20986 0.92372 0.95779 0.89164 1.22110 0.97678 0.95537 0.99580 1.20291 0.97304 0.94603 0.94789 1.18096 0.80604 0.79111 0.87733 1.90831 1.72177 1.56626 1.19401 1.47641 1.27365 1.45713 1.12346 1.22301 1.03760 0.98733 0.82926 1.21664 0.87906 0.97728 0.92355 1.21116 0.94620 0.96063 0.96942 1.21727 1.00163 0.95600 1.00772 1.21884 1.00444 1.01956 0.95069 1.20581 0.87858 0.93237 0.94609 1.42389 1.18403 1.31717 1.44784 1.19282 0.96185 1.08926 1.12273 0.91205 1.24720 0.98841 0.97850 0.99715 1.69668 1.32495 1.17150 1.39029 0.86122 0.82729 0.77206 0.80184 1.20601 1.21927 1.21958 1.22637 0.98317 1.02363 0.95910 1.18950 0.90799 0.86562 0.90492 1.84812 1.55067 1.61298 1.27459 1.66755 1.24340 1.03713 1.26056 0.92054 0.92779 0.91585 0.89526 0.89652 0.83333 0.92260 0.89670 0.90976 0.90162 0.89375 0.94611 0.91855 0.92462 0.93127 0.91346 0.93728 0.96400 0.96202 0.78019 0.93638 0.82902 0.74126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.77 37.16 0.36 -0.69 16 2 C -0.07 -0.56 6.33 -27.88 -0.18 -0.74 16 3 C 0.15 1.54 6.18 -82.65 -0.51 1.03 16 4 C -0.13 -1.38 9.34 -39.03 -0.36 -1.74 16 5 C -0.06 -0.66 5.28 -104.67 -0.55 -1.21 16 6 C 0.56 7.36 5.65 -12.19 -0.07 7.29 16 7 O -0.51 -8.58 15.11 5.36 0.08 -8.50 16 8 N -0.60 -6.85 2.40 -182.58 -0.44 -7.28 16 9 C 0.07 0.51 7.62 59.85 0.46 0.97 16 10 C 0.13 1.65 4.59 -4.04 -0.02 1.63 16 11 C -0.09 -1.38 0.60 -154.50 -0.09 -1.47 16 12 C -0.13 -2.20 7.05 37.16 0.26 -1.93 16 13 C -0.14 -2.05 7.07 37.16 0.26 -1.78 16 14 C 0.17 3.30 5.15 -4.04 -0.02 3.28 16 15 N -0.73 -18.24 5.00 -59.90 -0.30 -18.54 16 16 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 C -0.17 -1.56 7.61 -38.84 -0.30 -1.85 16 25 C 0.31 2.99 7.74 -17.17 -0.13 2.86 16 26 O -0.48 -3.73 13.56 -18.74 -0.25 -3.98 16 27 N -0.49 -5.23 9.87 -9.60 -0.09 -5.32 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.55 7.94 -51.92 -0.41 0.13 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.53 7.86 -51.93 -0.41 0.13 16 33 H 0.15 1.53 7.94 -52.49 -0.42 1.12 16 34 H 0.06 0.34 6.89 -51.93 -0.36 -0.02 16 35 H 0.08 0.64 6.29 -51.93 -0.33 0.31 16 36 H 0.07 0.51 5.84 -51.93 -0.30 0.21 16 37 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 39 H 0.03 0.58 6.22 -51.93 -0.32 0.25 16 40 H 0.06 1.26 6.86 -51.93 -0.36 0.90 16 41 H 0.06 1.07 7.85 -51.93 -0.41 0.67 16 42 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 44 H 0.04 0.57 6.07 -51.93 -0.32 0.25 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 47 H 0.38 10.10 5.36 -40.82 -0.22 9.88 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.15 1.08 5.32 -52.49 -0.28 0.80 16 50 H 0.40 1.07 9.06 45.56 0.41 1.48 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -34.83 392.04 -7.48 -42.31 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.95 Total: 7.08 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.14 Total: -1.65 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.11 Total: -58.68 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.17 Total: -12.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.83 -7.48 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700443636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.298 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds