Wall clock time and date at job start Tue Mar 31 2020 19:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46955 * 2 1 4 4 C 1.38022 * 119.51029 * 125.00221 * 3 2 1 5 5 C 1.39925 * 119.13032 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.89291 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99666 * 321.57993 * 6 5 4 8 8 N 1.34769 * 119.99969 * 141.58359 * 6 5 4 9 9 C 1.46500 * 120.00351 * 5.06811 * 8 6 5 10 10 C 1.46497 * 119.99928 * 185.07441 * 8 6 5 11 11 C 1.53003 * 109.47302 * 89.99476 * 10 8 6 12 12 C 1.52998 * 109.47226 * 300.00305 * 11 10 8 13 13 C 1.53005 * 109.46877 * 60.00297 * 11 10 8 14 14 C 1.53004 * 109.47201 * 179.97438 * 11 10 8 15 15 N 1.46501 * 109.47151 * 180.02562 * 14 11 10 16 16 C 1.36930 * 120.00303 * 180.02562 * 15 14 11 17 17 H 1.08009 * 119.99528 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00479 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99514 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46908 * 120.00535 * 20 18 16 23 23 H 1.48500 * 109.47016 * 240.00027 * 20 18 16 24 24 C 1.39621 * 118.21528 * 359.97438 * 5 4 3 25 25 C 1.38849 * 118.95064 * 0.24999 * 24 5 4 26 26 O 1.35678 * 119.62282 * 179.75032 * 25 24 5 27 27 N 1.31880 * 119.51487 * 305.01666 * 3 2 1 28 28 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47200 * 300.00741 * 1 2 3 30 30 H 1.09007 * 109.46644 * 60.00321 * 1 2 3 31 31 H 1.09000 * 109.46901 * 239.99493 * 2 1 3 32 32 H 1.08999 * 109.46634 * 119.99975 * 2 1 3 33 33 H 1.08000 * 120.43734 * 359.97057 * 4 3 2 34 34 H 1.09004 * 109.46827 * 84.69095 * 9 8 6 35 35 H 1.08999 * 109.47647 * 204.69402 * 9 8 6 36 36 H 1.08996 * 109.47120 * 324.69820 * 9 8 6 37 37 H 1.08997 * 109.47415 * 209.99602 * 10 8 6 38 38 H 1.09000 * 109.47305 * 329.99932 * 10 8 6 39 39 H 1.08994 * 109.47339 * 59.99940 * 12 11 10 40 40 H 1.09004 * 109.47148 * 179.97438 * 12 11 10 41 41 H 1.09004 * 109.46858 * 299.99783 * 12 11 10 42 42 H 1.09000 * 109.46913 * 59.99833 * 13 11 10 43 43 H 1.08994 * 109.47157 * 180.02562 * 13 11 10 44 44 H 1.08996 * 109.46780 * 300.00127 * 13 11 10 45 45 H 1.09000 * 109.47480 * 300.00712 * 14 11 10 46 46 H 1.09009 * 109.46626 * 60.00520 * 14 11 10 47 47 H 0.97004 * 119.99850 * 359.97438 * 15 14 11 48 48 H 0.97008 * 119.99723 * 180.02562 * 19 18 16 49 49 H 1.08001 * 120.52010 * 179.97438 * 24 5 4 50 50 H 0.96704 * 114.00297 * 89.99988 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0130 7 8 4.1897 3.2665 3.1641 8 7 5.3041 4.4849 1.6795 9 6 5.3856 5.0174 0.3172 10 6 6.3012 4.8751 2.6793 11 6 7.4743 3.8936 2.6399 12 6 6.9690 2.4825 2.9473 13 6 8.1112 3.9156 1.2489 14 6 8.5160 4.3015 3.6837 15 7 9.6394 3.3620 3.6456 16 6 10.6990 3.5268 4.4971 17 1 10.7067 4.3498 5.1965 18 6 11.7633 2.6363 4.4613 19 7 11.7540 1.6338 3.6086 20 14 13.2091 2.8618 5.6225 21 1 12.9781 4.0557 6.4746 22 1 13.3452 1.6589 6.4827 23 1 14.4530 3.0493 4.8334 24 6 2.9207 4.0034 -0.0360 25 6 2.0353 3.5098 -0.9848 26 8 1.5857 4.3257 -1.9712 27 7 1.6280 2.2529 -0.9399 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2335 1.1436 1.7499 34 1 4.7421 5.8930 0.2303 35 1 6.4153 5.3002 0.0985 36 1 5.0598 4.2555 -0.3909 37 1 6.6612 5.8804 2.4604 38 1 5.8476 4.8594 3.6703 39 1 6.2272 2.1921 2.2034 40 1 7.8047 1.7831 2.9188 41 1 6.5153 2.4669 3.9383 42 1 8.4711 4.9209 1.0300 43 1 8.9465 3.2160 1.2207 44 1 7.3693 3.6252 0.5051 45 1 8.8758 5.3068 3.4644 46 1 8.0624 4.2861 4.6749 47 1 9.6323 2.6227 3.0176 48 1 12.4976 1.0113 3.5838 49 1 3.2530 5.0302 -0.0774 50 1 2.1356 4.3212 -2.7666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700443636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:28 Heat of formation + Delta-G solvation = -49.871668 kcal Electronic energy + Delta-G solvation = -29644.926885 eV Core-core repulsion = 25672.143648 eV Total energy + Delta-G solvation = -3972.783237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15798 -40.89517 -38.81591 -38.22253 -36.61734 -35.35829 -34.53802 -33.26444 -32.14246 -30.55362 -28.93637 -28.29938 -27.38689 -27.32423 -25.59373 -24.94451 -24.04261 -22.97885 -20.84362 -19.94163 -19.49708 -19.13410 -18.27013 -17.70644 -17.28754 -17.04243 -16.84755 -16.57772 -16.25841 -15.66382 -15.49105 -15.34450 -15.18485 -14.97149 -14.46529 -14.44992 -14.26888 -14.18740 -13.87240 -13.77500 -13.51598 -13.02021 -12.96754 -12.94656 -12.81558 -12.75071 -12.55867 -12.48506 -12.36139 -12.27455 -12.06591 -11.96488 -11.69941 -11.66545 -11.59791 -11.30892 -10.94954 -10.93372 -10.42476 -9.89497 -9.69102 -8.96608 -7.94353 -5.21748 -0.36106 -0.13040 1.46587 1.47650 1.52483 1.57644 1.84155 2.47978 2.56457 2.58240 3.19303 3.39320 3.43796 3.80787 3.83767 3.85524 3.87242 3.93796 4.12109 4.19508 4.26659 4.31548 4.37871 4.43277 4.46412 4.51409 4.58822 4.67453 4.76059 4.79184 4.80500 4.86499 4.90093 4.92045 4.93563 5.05225 5.13196 5.15054 5.16853 5.16997 5.29856 5.42019 5.44402 5.47079 5.49709 5.53824 6.23195 6.28448 6.57976 6.83228 6.96438 7.35065 8.12237 8.35649 9.29625 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.002411 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.515263 B =11611.787059 C =12289.367982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C 0.152 3.848 4 C -0.143 4.143 5 C -0.070 4.070 6 C 0.554 3.446 7 O -0.560 6.560 8 N -0.594 5.594 9 C 0.055 3.945 10 C 0.133 3.867 11 C -0.077 4.077 12 C -0.112 4.112 13 C -0.127 4.127 14 C 0.163 3.837 15 N -0.739 5.739 16 C -0.240 4.240 17 H 0.075 0.925 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.296 1.296 23 H -0.292 1.292 24 C -0.159 4.159 25 C 0.312 3.688 26 O -0.484 6.484 27 N -0.505 5.505 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.010 0.990 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.178 0.822 50 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.252 5.453 -14.774 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C 0.015 3.985 4 C -0.163 4.163 5 C -0.081 4.081 6 C 0.342 3.658 7 O -0.439 6.439 8 N -0.324 5.324 9 C -0.086 4.086 10 C 0.010 3.990 11 C -0.078 4.078 12 C -0.169 4.169 13 C -0.184 4.184 14 C 0.035 3.965 15 N -0.383 5.383 16 C -0.372 4.372 17 H 0.093 0.907 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.223 1.223 23 H -0.219 1.219 24 C -0.180 4.180 25 C 0.133 3.867 26 O -0.295 6.295 27 N -0.226 5.226 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.209 0.791 48 H 0.059 0.941 49 H 0.195 0.805 50 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -23.219 5.306 -14.324 27.793 hybrid contribution 1.978 -0.322 0.910 2.201 sum -21.241 4.984 -13.414 25.611 Atomic orbital electron populations 1.21646 0.93635 1.02778 1.01735 1.20662 0.97356 0.88587 1.04761 1.21253 0.91952 0.96656 0.88649 1.22171 0.98410 0.95737 1.00012 1.20184 0.97671 0.95140 0.95107 1.18450 0.81009 0.78774 0.87526 1.90811 1.73514 1.58277 1.21304 1.47690 1.26134 1.45062 1.13534 1.22623 1.05234 1.00020 0.80699 1.21476 0.86875 0.98084 0.92517 1.21010 0.94790 0.95625 0.96385 1.21572 0.98947 0.96299 1.00127 1.21799 0.99727 1.02059 0.94843 1.20742 0.87400 0.92778 0.95531 1.42581 1.19189 1.32385 1.44105 1.19679 0.96814 1.08563 1.12177 0.90744 1.25535 1.01705 0.97984 1.01697 1.69825 1.33209 1.18172 1.40918 0.85083 0.79295 0.77253 0.78198 1.19086 1.22347 1.21911 1.22765 0.97627 1.02975 0.94672 1.19106 0.90309 0.86365 0.90942 1.84770 1.55786 1.60679 1.28218 1.66826 1.24858 1.04450 1.26423 0.90349 0.93624 0.92648 0.88572 0.88639 0.83870 0.89307 0.88751 0.90016 0.87065 0.91042 0.93363 0.94974 0.94366 0.91333 0.94984 0.91157 0.95030 0.97164 0.79071 0.94104 0.80515 0.71484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.77 71.98 0.70 -1.22 16 2 C -0.08 -1.08 6.33 29.85 0.19 -0.89 16 3 C 0.15 2.91 6.18 42.50 0.26 3.17 16 4 C -0.14 -3.02 9.34 22.63 0.21 -2.81 16 5 C -0.07 -1.48 5.28 -19.90 -0.11 -1.58 16 6 C 0.55 14.15 5.65 86.88 0.49 14.64 16 7 O -0.56 -19.00 15.11 -3.75 -0.06 -19.06 16 8 N -0.59 -12.24 2.40 -849.85 -2.04 -14.28 16 9 C 0.06 0.64 7.62 127.77 0.97 1.61 16 10 C 0.13 3.26 4.59 86.38 0.40 3.65 16 11 C -0.08 -2.41 0.60 -52.18 -0.03 -2.44 16 12 C -0.11 -4.05 7.05 71.98 0.51 -3.54 16 13 C -0.13 -3.63 7.07 71.98 0.51 -3.12 16 14 C 0.16 6.47 5.15 86.38 0.44 6.91 16 15 N -0.74 -37.70 5.00 -343.43 -1.72 -39.42 16 16 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 19 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 20 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.16 -2.49 7.61 22.75 0.17 -2.32 16 25 C 0.31 5.29 7.74 84.78 0.66 5.95 16 26 O -0.48 -6.13 13.56 -89.96 -1.22 -7.35 16 27 N -0.51 -10.08 9.87 -297.18 -2.93 -13.02 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.87 7.94 -2.38 -0.02 0.86 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.13 7.86 -2.39 -0.02 1.12 16 33 H 0.14 3.08 7.94 -2.91 -0.02 3.05 16 34 H 0.09 0.57 6.89 -2.38 -0.02 0.56 16 35 H 0.09 0.98 6.29 -2.39 -0.02 0.97 16 36 H 0.08 0.84 5.84 -2.39 -0.01 0.83 16 37 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 38 H 0.07 2.03 7.36 -2.39 -0.02 2.01 16 39 H 0.05 1.59 6.22 -2.39 -0.01 1.57 16 40 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 41 H 0.04 1.49 7.85 -2.38 -0.02 1.48 16 42 H 0.07 1.71 8.07 -2.39 -0.02 1.69 16 43 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 44 H 0.07 1.63 6.07 -2.39 -0.01 1.61 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.38 20.41 5.36 -92.71 -0.50 19.92 16 48 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 49 H 0.18 1.79 5.32 -2.91 -0.02 1.77 16 50 H 0.42 0.89 9.06 -74.05 -0.67 0.22 16 Total: -1.00 -77.19 392.04 0.83 -76.36 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.20 Total: 26.44 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.69 Total: 1.28 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -6.41 Total: -126.38 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.28 Total: -26.41 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.19 0.83 -76.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700443636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.486 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds