Wall clock time and date at job start Tue Mar 31 2020 19:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46920 * 2 1 4 4 C 1.36772 * 125.79991 * 270.00118 * 3 2 1 5 5 C 1.47257 * 126.94258 * 359.97438 * 4 3 2 6 6 O 1.21635 * 120.00166 * 37.90005 * 5 4 3 7 7 N 1.34771 * 120.00126 * 217.89905 * 5 4 3 8 8 C 1.47152 * 120.98116 * 5.31830 * 7 5 4 9 9 C 1.53710 * 108.16570 * 129.43276 * 8 7 5 10 10 O 1.42960 * 109.14908 * 52.53215 * 9 8 7 11 11 C 1.42965 * 114.16877 * 297.29034 * 10 9 8 12 12 H 1.08995 * 109.55407 * 302.63669 * 11 10 9 13 13 C 1.53000 * 109.50966 * 182.50558 * 11 10 9 14 14 H 1.09005 * 109.46300 * 185.25753 * 13 11 10 15 15 C 1.52997 * 109.47238 * 305.24961 * 13 11 10 16 16 N 1.46487 * 109.47255 * 65.25782 * 13 11 10 17 17 C 1.36940 * 120.00086 * 154.99572 * 16 13 11 18 18 H 1.08001 * 120.00074 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00132 * 179.97438 * 17 16 13 20 20 N 1.31618 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46718 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47300 * 120.00164 * 21 19 17 24 24 H 1.48498 * 109.47446 * 240.00953 * 21 19 17 25 25 C 1.47150 * 120.98491 * 185.59444 * 7 5 4 26 26 C 1.46683 * 106.11183 * 180.02562 * 4 3 2 27 27 C 1.34485 * 106.33718 * 359.97438 * 26 4 3 28 28 N 1.34656 * 125.80278 * 89.69405 * 3 2 1 29 29 C 1.46503 * 124.84962 * 359.95793 * 28 3 2 30 30 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47256 * 300.00105 * 1 2 3 32 32 H 1.08998 * 109.47394 * 60.00003 * 1 2 3 33 33 H 1.09005 * 109.47180 * 119.99655 * 2 1 3 34 34 H 1.08994 * 109.47338 * 239.99692 * 2 1 3 35 35 H 1.09003 * 109.67753 * 249.20747 * 8 7 5 36 36 H 1.08996 * 109.68520 * 9.75941 * 8 7 5 37 37 H 1.08998 * 109.65368 * 292.56925 * 9 8 7 38 38 H 1.09004 * 109.48689 * 172.40204 * 9 8 7 39 39 H 1.09007 * 109.46646 * 60.00602 * 15 13 11 40 40 H 1.08997 * 109.47255 * 179.97438 * 15 13 11 41 41 H 1.08999 * 109.47622 * 300.00755 * 15 13 11 42 42 H 0.97002 * 120.00589 * 334.99301 * 16 13 11 43 43 H 0.97000 * 120.00097 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.68150 * 350.23697 * 25 7 5 45 45 H 1.08999 * 109.68511 * 110.78797 * 25 7 5 46 46 H 1.08000 * 126.83177 * 180.02562 * 26 4 3 47 47 H 1.08005 * 125.57352 * 179.97438 * 27 26 4 48 48 H 1.09008 * 109.46994 * 90.00137 * 29 28 3 49 49 H 1.08993 * 109.47259 * 210.00100 * 29 28 3 50 50 H 1.09000 * 109.47582 * 330.00567 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2989 2.1752 -1.1093 5 6 2.1538 1.7632 -2.5156 6 8 1.2193 1.0600 -2.8500 7 7 3.0563 2.1652 -3.4322 8 6 4.2564 2.9180 -3.0341 9 6 5.4815 2.2328 -3.6604 10 8 5.2659 2.0794 -5.0653 11 6 4.1579 1.2400 -5.3992 12 1 4.2973 0.2563 -4.9509 13 6 4.0630 1.1000 -6.9198 14 1 3.1652 0.5379 -7.1774 15 6 3.9950 2.4894 -7.5567 16 7 5.2433 0.3909 -7.4195 17 6 5.1789 -0.2980 -8.6013 18 1 4.2580 -0.3182 -9.1651 19 6 6.2976 -0.9695 -9.0751 20 7 7.4201 -0.9446 -8.3883 21 14 6.2100 -1.9087 -10.6875 22 1 4.8461 -1.7813 -11.2609 23 1 7.2015 -1.3491 -11.6408 24 1 6.5126 -3.3418 -10.4428 25 6 2.8678 1.8696 -4.8613 26 6 2.7598 3.4771 -0.6151 27 6 2.7334 3.4031 0.7274 28 7 2.2893 2.1655 1.0921 29 6 2.1198 1.7107 2.4744 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 4.1822 3.9442 -3.3941 36 1 4.3480 2.9153 -1.9480 37 1 5.6263 1.2531 -3.2051 38 1 6.3667 2.8465 -3.4926 39 1 4.8927 3.0515 -7.2989 40 1 3.9278 2.3897 -8.6400 41 1 3.1167 3.0171 -7.1848 42 1 6.0707 0.4093 -6.9134 43 1 8.2017 -1.4142 -8.7192 44 1 2.0393 1.1721 -4.9858 45 1 2.6561 2.7919 -5.4022 46 1 3.0599 4.3265 -1.2109 47 1 3.0142 4.1950 1.4060 48 1 3.0465 1.2548 2.8231 49 1 1.8721 2.5615 3.1090 50 1 1.3147 0.9772 2.5194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700609074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:17 Heat of formation + Delta-G solvation = -12.063430 kcal Electronic energy + Delta-G solvation = -30010.805397 eV Core-core repulsion = 26039.661648 eV Total energy + Delta-G solvation = -3971.143749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69618 -39.86374 -38.03359 -35.41708 -34.47046 -33.76960 -33.12743 -32.33689 -30.20003 -28.73729 -28.24904 -27.61098 -26.42892 -24.64482 -23.73281 -23.34550 -22.66566 -21.26053 -20.09321 -19.52606 -18.40211 -17.48332 -17.10216 -16.36342 -16.11893 -15.81535 -15.66957 -15.09594 -14.96498 -14.62132 -14.35333 -14.27587 -14.05640 -13.70374 -13.56738 -13.28559 -13.18311 -12.91986 -12.81010 -12.69394 -12.47013 -12.35068 -12.12951 -11.98958 -11.77507 -11.56836 -11.22705 -11.14694 -11.03031 -10.79070 -10.65431 -10.40184 -10.17553 -9.93268 -9.70801 -9.67143 -9.56455 -8.83812 -8.77947 -8.44002 -8.21857 -6.86297 -5.67620 -2.95859 1.70489 2.21694 2.50304 3.07613 3.36612 3.48850 3.54430 3.56647 4.12772 4.33445 4.38147 4.59736 4.64656 4.69091 4.80774 4.86763 4.93001 4.96618 5.12692 5.16020 5.25855 5.29330 5.34774 5.38232 5.47187 5.57906 5.62318 5.66337 5.70391 5.78386 5.81509 5.88074 5.90731 6.00185 6.07690 6.12082 6.14373 6.32072 6.52682 6.55850 6.60094 6.74487 6.84239 6.91291 6.97499 7.24803 7.53502 7.60870 7.78275 8.34931 8.50782 9.62540 10.21202 10.57883 11.55016 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002555 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.149154 B =10955.927521 C =11349.815093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C 0.099 3.901 4 C -0.225 4.225 5 C 0.593 3.407 6 O -0.545 6.545 7 N -0.608 5.608 8 C 0.071 3.929 9 C 0.046 3.954 10 O -0.360 6.360 11 C 0.077 3.923 12 H 0.062 0.938 13 C 0.185 3.815 14 H 0.059 0.941 15 C -0.162 4.162 16 N -0.719 5.719 17 C -0.235 4.235 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.084 3.916 26 C -0.168 4.168 27 C -0.017 4.017 28 N -0.445 5.445 29 C 0.068 3.932 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.389 0.611 43 H 0.253 0.747 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.147 0.853 47 H 0.167 0.833 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 9.603 25.405 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.017 4.017 4 C -0.235 4.235 5 C 0.383 3.617 6 O -0.424 6.424 7 N -0.341 5.341 8 C -0.052 4.052 9 C -0.032 4.032 10 O -0.278 6.278 11 C 0.018 3.982 12 H 0.080 0.920 13 C 0.074 3.926 14 H 0.076 0.924 15 C -0.222 4.222 16 N -0.361 5.361 17 C -0.367 4.367 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.039 4.039 26 C -0.192 4.192 27 C -0.144 4.144 28 N -0.121 5.121 29 C -0.074 4.074 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.223 0.777 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.164 0.836 47 H 0.184 0.816 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.996 9.137 25.272 29.036 hybrid contribution 0.359 -0.362 -0.392 0.643 sum -10.637 8.775 24.881 28.446 Atomic orbital electron populations 1.21702 0.93791 1.02070 1.02514 1.20180 0.96945 0.89153 1.03382 1.20215 1.01717 0.94659 0.85123 1.20066 1.15224 0.96407 0.91822 1.17433 0.81390 0.78846 0.84067 1.90752 1.32474 1.38102 1.81038 1.47957 1.22733 1.56156 1.07278 1.22748 0.85087 0.95707 1.01680 1.22987 0.96733 1.00107 0.83378 1.88079 1.49626 1.69109 1.20978 1.22940 0.84625 0.92708 0.97942 0.91997 1.20195 0.92453 0.92697 0.87237 0.92350 1.22405 1.00030 0.98747 1.00995 1.42369 1.09540 1.59193 1.24995 1.19304 0.96611 1.23115 0.97641 0.91132 1.24735 0.95952 1.01439 0.98961 1.69692 1.01456 1.47628 1.39210 0.86138 0.77159 0.79488 0.83557 1.20572 1.21970 1.21986 1.22451 0.99767 1.02106 0.79531 1.22032 1.06571 0.97281 0.93355 1.21685 1.08187 0.88306 0.96175 1.43475 1.50977 1.11654 1.06004 1.22092 1.03308 1.01905 0.80114 0.92078 0.93580 0.90810 0.91437 0.89050 0.90938 0.88079 0.93066 0.88147 0.92461 0.92988 0.94639 0.77696 0.93689 0.88283 0.90358 0.83564 0.81616 0.90694 0.89599 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.06 -0.58 5.28 -27.88 -0.15 -0.73 16 3 C 0.10 1.07 6.14 -81.88 -0.50 0.57 16 4 C -0.23 -2.84 5.37 -103.35 -0.56 -3.40 16 5 C 0.59 9.09 7.35 -12.60 -0.09 9.00 16 6 O -0.55 -9.81 15.13 5.25 0.08 -9.73 16 7 N -0.61 -8.83 3.01 -173.35 -0.52 -9.36 16 8 C 0.07 0.84 5.64 -3.32 -0.02 0.82 16 9 C 0.05 0.63 7.00 37.53 0.26 0.89 16 10 O -0.36 -6.45 9.24 -35.23 -0.33 -6.78 16 11 C 0.08 1.41 2.61 -26.58 -0.07 1.34 16 12 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.18 3.86 2.77 -67.94 -0.19 3.67 16 14 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 15 C -0.16 -3.10 9.06 37.16 0.34 -2.76 16 16 N -0.72 -18.78 5.10 -53.43 -0.27 -19.05 16 17 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 C 0.08 1.33 5.84 -3.53 -0.02 1.31 16 26 C -0.17 -1.66 8.70 -37.50 -0.33 -1.98 16 27 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 28 N -0.45 -3.63 3.09 -119.88 -0.37 -4.00 16 29 C 0.07 0.28 10.61 59.85 0.64 0.92 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 33 H 0.07 0.50 7.59 -51.93 -0.39 0.11 16 34 H 0.09 1.09 7.61 -51.93 -0.40 0.70 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.04 4.90 -51.93 -0.25 0.79 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.15 7.56 -51.92 -0.39 0.76 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 42 H 0.39 10.95 7.59 -40.82 -0.31 10.64 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.10 1.65 7.06 -51.92 -0.37 1.28 16 45 H 0.08 1.18 6.27 -51.93 -0.33 0.85 16 46 H 0.15 1.24 7.37 -52.49 -0.39 0.85 16 47 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 49 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 50 H 0.08 0.31 7.44 -51.93 -0.39 -0.08 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -35.17 395.36 -8.63 -43.80 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.13 Total: 8.48 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.75 Total: 0.95 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.44 Total: -60.55 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.25 Total: -16.51 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.17 -8.63 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700609074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds