Wall clock time and date at job start Tue Mar 31 2020 19:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47285 * 2 1 4 4 C 1.36766 * 125.80297 * 270.00196 * 3 2 1 5 5 C 1.47266 * 126.94268 * 359.96731 * 4 3 2 6 6 O 1.21627 * 119.99947 * 314.38128 * 5 4 3 7 7 N 1.34776 * 119.99761 * 134.38676 * 5 4 3 8 8 C 1.47149 * 120.98598 * 3.84624 * 7 5 4 9 9 C 1.52878 * 108.60978 * 230.50439 * 8 7 5 10 10 O 1.42967 * 109.29827 * 307.93800 * 9 8 7 11 11 C 1.42958 * 114.16510 * 62.44557 * 10 9 8 12 12 H 1.08998 * 109.55824 * 57.37329 * 11 10 9 13 13 C 1.53010 * 109.50918 * 177.50014 * 11 10 9 14 14 H 1.08998 * 109.46756 * 184.74925 * 13 11 10 15 15 C 1.52996 * 109.46672 * 304.74524 * 13 11 10 16 16 N 1.46492 * 109.46978 * 64.74271 * 13 11 10 17 17 C 1.36944 * 119.99530 * 155.00249 * 16 13 11 18 18 H 1.07997 * 119.99751 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99795 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47581 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47084 * 120.00070 * 21 19 17 24 24 H 1.48497 * 109.47575 * 240.00155 * 21 19 17 25 25 C 1.47150 * 120.97777 * 184.13386 * 7 5 4 26 26 C 1.46691 * 106.11449 * 179.97438 * 4 3 2 27 27 C 1.34490 * 106.33187 * 0.02562 * 26 4 3 28 28 N 1.34656 * 125.79540 * 90.00068 * 3 2 1 29 29 C 1.46503 * 124.85451 * 359.95830 * 28 3 2 30 30 H 1.08999 * 109.46971 * 59.99686 * 1 2 3 31 31 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46763 * 299.99589 * 1 2 3 33 33 H 1.09003 * 109.46763 * 240.00411 * 2 1 3 34 34 H 1.09001 * 109.47075 * 120.00853 * 2 1 3 35 35 H 1.09000 * 109.67872 * 350.28239 * 8 7 5 36 36 H 1.08996 * 109.68484 * 110.83431 * 8 7 5 37 37 H 1.08996 * 109.58558 * 187.92083 * 9 8 7 38 38 H 1.09003 * 109.36423 * 67.81374 * 9 8 7 39 39 H 1.09006 * 109.47660 * 60.00248 * 15 13 11 40 40 H 1.09007 * 109.47068 * 180.02562 * 15 13 11 41 41 H 1.09000 * 109.47527 * 300.00038 * 15 13 11 42 42 H 0.96995 * 120.00373 * 335.00561 * 16 13 11 43 43 H 0.96989 * 120.00027 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.68138 * 249.16278 * 25 7 5 45 45 H 1.08997 * 109.68357 * 9.67671 * 25 7 5 46 46 H 1.07991 * 126.83432 * 179.73440 * 26 4 3 47 47 H 1.07997 * 125.57250 * 180.02562 * 27 26 4 48 48 H 1.08998 * 109.47023 * 90.00080 * 29 28 3 49 49 H 1.08999 * 109.46737 * 209.99635 * 29 28 3 50 50 H 1.08994 * 109.47066 * 329.99556 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2990 2.1751 -1.1092 5 6 2.1540 1.7631 -2.5156 6 8 2.5697 0.6789 -2.8776 7 7 1.5608 2.5875 -3.4015 8 6 1.1256 3.9367 -3.0071 9 6 -0.3280 4.1268 -3.4408 10 8 -0.4545 3.7980 -4.8264 11 6 -0.1447 2.4370 -5.1356 12 1 -0.7856 1.7755 -4.5529 13 6 -0.3740 2.1871 -6.6276 14 1 -0.2192 1.1307 -6.8469 15 6 -1.8060 2.5800 -6.9962 16 7 0.5693 2.9914 -7.4081 17 6 0.9255 2.5961 -8.6699 18 1 0.5112 1.6912 -9.0894 19 6 1.8198 3.3579 -9.4094 20 7 2.3259 4.4598 -8.8976 21 14 2.3061 2.8184 -11.1303 22 1 1.6035 1.5550 -11.4702 23 1 1.9273 3.8725 -12.1051 24 1 3.7738 2.5988 -11.1841 25 6 1.3234 2.1626 -4.7902 26 6 2.7589 3.4775 -0.6150 27 6 2.7329 3.4031 0.7276 28 7 2.2949 2.1633 1.0922 29 6 2.1323 1.7060 2.4745 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 1.2019 4.0454 -1.9252 36 1 1.7522 4.6823 -3.4965 37 1 -0.6233 5.1642 -3.2843 38 1 -0.9696 3.4719 -2.8512 39 1 -1.9609 3.6364 -6.7768 40 1 -1.9696 2.4015 -8.0590 41 1 -2.5080 1.9816 -6.4154 42 1 0.9417 3.8038 -7.0311 43 1 2.9510 4.9919 -9.4141 44 1 1.9703 2.7264 -5.4623 45 1 1.5313 1.0971 -4.8887 46 1 3.0628 4.3254 -1.2107 47 1 3.0123 4.1955 1.4062 48 1 3.0606 1.2494 2.8177 49 1 1.8880 2.5557 3.1119 50 1 1.3273 0.9727 2.5222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700609075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:20 Heat of formation + Delta-G solvation = -11.350886 kcal Electronic energy + Delta-G solvation = -30426.842725 eV Core-core repulsion = 26455.729874 eV Total energy + Delta-G solvation = -3971.112851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61272 -39.75780 -37.96542 -35.39289 -34.39893 -33.81406 -33.02269 -32.17422 -30.10150 -28.65754 -28.30735 -27.77032 -26.55743 -24.16887 -23.65105 -23.38594 -22.65126 -21.17062 -19.97009 -19.54429 -18.35579 -17.41854 -17.11175 -16.40403 -16.09287 -15.67722 -15.49043 -15.19634 -14.58218 -14.54974 -14.46749 -14.22432 -14.00399 -13.53791 -13.51724 -13.28105 -13.08334 -12.98190 -12.87736 -12.74159 -12.28174 -12.25570 -12.15093 -11.81493 -11.57964 -11.55537 -11.22745 -11.17554 -11.07532 -10.78462 -10.70382 -10.35332 -10.17774 -9.90965 -9.76042 -9.52491 -9.48953 -8.85152 -8.67871 -8.33281 -8.10614 -6.84845 -5.67052 -2.95087 1.82170 2.32706 2.57733 3.20724 3.43286 3.49999 3.55640 3.57656 4.13415 4.38189 4.41738 4.66353 4.67188 4.72855 4.83942 4.95042 4.99895 5.04942 5.07747 5.25964 5.28542 5.34321 5.37760 5.49313 5.53463 5.59226 5.62306 5.70731 5.73808 5.83122 5.85143 5.93698 5.96503 6.00806 6.03621 6.16941 6.31525 6.49199 6.56354 6.62932 6.76498 6.77762 6.87594 6.93063 7.05620 7.22516 7.60554 7.70263 7.79645 8.48993 8.51271 9.63417 10.20848 10.57882 11.55406 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.002895 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.589914 B = 9668.658135 C = 9878.336746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C 0.092 3.908 4 C -0.220 4.220 5 C 0.592 3.408 6 O -0.548 6.548 7 N -0.605 5.605 8 C 0.067 3.933 9 C 0.049 3.951 10 O -0.361 6.361 11 C 0.079 3.921 12 H 0.053 0.947 13 C 0.182 3.818 14 H 0.059 0.941 15 C -0.159 4.159 16 N -0.717 5.717 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.087 3.913 26 C -0.168 4.168 27 C -0.017 4.017 28 N -0.446 5.446 29 C 0.069 3.931 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.389 0.611 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.148 0.852 47 H 0.167 0.833 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -3.193 26.838 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.023 4.023 4 C -0.229 4.229 5 C 0.382 3.618 6 O -0.427 6.427 7 N -0.338 5.338 8 C -0.056 4.056 9 C -0.030 4.030 10 O -0.279 6.279 11 C 0.020 3.980 12 H 0.070 0.930 13 C 0.072 3.928 14 H 0.077 0.923 15 C -0.219 4.219 16 N -0.360 5.360 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.035 4.035 26 C -0.193 4.193 27 C -0.144 4.144 28 N -0.122 5.122 29 C -0.073 4.073 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.224 0.776 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.165 0.835 47 H 0.184 0.816 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.097 -3.813 26.683 27.264 hybrid contribution 0.585 0.180 -0.534 0.813 sum -3.512 -3.633 26.149 26.632 Atomic orbital electron populations 1.21721 0.94284 1.02116 1.02047 1.20292 0.96248 0.89642 1.04366 1.20105 1.02882 0.94276 0.85079 1.20095 1.15008 0.95906 0.91941 1.17428 0.76923 0.83466 0.84021 1.90748 1.49445 1.22804 1.79669 1.48032 1.59286 1.15092 1.11351 1.22573 0.96682 0.84236 1.02154 1.22807 0.94688 1.01279 0.84177 1.88089 1.88851 1.27907 1.23061 1.22891 0.93770 0.83122 0.98243 0.92958 1.20256 0.90662 0.95684 0.86216 0.92311 1.22324 0.97478 1.01384 1.00718 1.42416 1.50460 1.28075 1.15049 1.19286 1.20253 1.05856 0.91323 0.91178 1.24715 1.00240 0.97463 0.98509 1.69679 1.34805 1.16154 1.37221 0.86157 0.77948 0.77546 0.84785 1.20620 1.22039 1.21995 1.22405 0.97580 1.02855 0.80623 1.22039 1.07003 0.96865 0.93356 1.21672 1.08309 0.88230 0.96149 1.43453 1.51238 1.11609 1.05906 1.22067 1.03217 1.01801 0.80230 0.92170 0.91808 0.93129 0.88001 0.91162 0.88066 0.90522 0.88220 0.93617 0.92480 0.92884 0.94947 0.77577 0.93694 0.88496 0.88742 0.83466 0.81620 0.90813 0.89636 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.07 -0.68 5.66 -27.88 -0.16 -0.84 16 3 C 0.09 1.06 6.14 -81.89 -0.50 0.56 16 4 C -0.22 -3.05 5.34 -103.35 -0.55 -3.60 16 5 C 0.59 10.15 7.40 -12.59 -0.09 10.06 16 6 O -0.55 -11.12 15.38 5.25 0.08 -11.04 16 7 N -0.60 -10.02 3.03 -173.86 -0.53 -10.55 16 8 C 0.07 0.91 5.96 -3.75 -0.02 0.88 16 9 C 0.05 0.65 6.97 37.09 0.26 0.91 16 10 O -0.36 -6.42 9.24 -35.23 -0.33 -6.74 16 11 C 0.08 1.42 2.57 -26.57 -0.07 1.35 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 13 C 0.18 3.75 2.80 -67.93 -0.19 3.56 16 14 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 15 C -0.16 -3.04 9.30 37.16 0.35 -2.69 16 16 N -0.72 -18.18 4.24 -53.43 -0.23 -18.40 16 17 C -0.24 -6.60 9.93 -15.05 -0.15 -6.75 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 21 Si 0.90 22.86 29.55 -169.99 -5.02 17.83 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 C 0.09 1.66 5.81 -3.53 -0.02 1.64 16 26 C -0.17 -1.90 8.69 -37.50 -0.33 -2.22 16 27 C -0.02 -0.15 11.34 -16.82 -0.19 -0.34 16 28 N -0.45 -3.94 3.09 -119.88 -0.37 -4.31 16 29 C 0.07 0.32 10.61 59.85 0.63 0.95 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.10 1.30 6.89 -51.93 -0.36 0.94 16 34 H 0.07 0.54 7.58 -51.93 -0.39 0.15 16 35 H 0.10 1.16 4.57 -51.93 -0.24 0.92 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.39 10.64 7.08 -40.82 -0.29 10.35 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.10 2.15 6.94 -51.93 -0.36 1.79 16 45 H 0.09 1.88 7.11 -51.93 -0.37 1.51 16 46 H 0.15 1.52 7.53 -52.49 -0.40 1.12 16 47 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 50 H 0.08 0.32 7.47 -51.93 -0.39 -0.07 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -34.82 397.35 -8.66 -43.48 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.22 Total: 9.40 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.76 Total: 2.09 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.40 Total: -61.02 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.24 Total: -17.78 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.82 -8.66 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700609075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.125 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds