Wall clock time and date at job start Tue Mar 31 2020 19:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47182 * 2 1 4 4 N 1.31700 * 119.71657 * 96.23467 * 3 2 1 5 5 C 1.31921 * 121.88105 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.45827 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46941 * 265.00107 * 6 5 4 8 8 C 1.52996 * 109.46948 * 145.00389 * 6 5 4 9 9 C 1.38356 * 121.07928 * 0.28240 * 5 4 3 10 10 C 1.38353 * 119.30327 * 359.42574 * 9 5 4 11 11 C 1.39523 * 119.72093 * 276.21606 * 3 2 1 12 12 C 1.47841 * 120.55682 * 359.97433 * 11 3 2 13 13 O 1.21558 * 119.99882 * 5.96170 * 12 11 3 14 14 N 1.34774 * 120.00126 * 185.95411 * 12 11 3 15 15 C 1.46497 * 120.00136 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47186 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.46696 * 294.99846 * 16 15 14 18 18 C 1.53002 * 109.47081 * 175.00131 * 16 15 14 19 19 O 1.42898 * 109.47180 * 304.99372 * 18 16 15 20 20 N 1.46502 * 109.47559 * 54.99721 * 16 15 14 21 21 C 1.36936 * 119.99913 * 205.00266 * 20 16 15 22 22 H 1.07998 * 120.00511 * 0.02562 * 21 20 16 23 23 C 1.38816 * 119.99684 * 179.97438 * 21 20 16 24 24 N 1.31621 * 119.99762 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47502 * 59.99935 * 25 23 21 27 27 H 1.48501 * 109.47007 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47116 * 299.99979 * 25 23 21 29 29 H 1.09000 * 109.47314 * 59.99501 * 1 2 3 30 30 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46624 * 299.99387 * 1 2 3 32 32 H 1.09002 * 109.47035 * 240.00798 * 2 1 3 33 33 H 1.09000 * 109.47314 * 120.00499 * 2 1 3 34 34 H 1.09000 * 109.47254 * 25.00330 * 6 5 4 35 35 H 1.09002 * 109.47844 * 300.00222 * 7 6 5 36 36 H 1.08999 * 109.47171 * 60.00426 * 7 6 5 37 37 H 1.09003 * 109.47261 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46986 * 179.97438 * 8 6 5 39 39 H 1.08997 * 109.47307 * 299.99682 * 8 6 5 40 40 H 1.09000 * 109.47191 * 59.99902 * 8 6 5 41 41 H 1.08003 * 120.34436 * 179.72476 * 9 5 4 42 42 H 1.07996 * 120.85820 * 180.28653 * 10 9 5 43 43 H 0.96996 * 119.99617 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.46891 * 300.00101 * 15 14 12 45 45 H 1.08997 * 109.46938 * 59.99925 * 15 14 12 46 46 H 1.08997 * 109.47417 * 64.99528 * 18 16 15 47 47 H 1.09010 * 109.46885 * 184.99828 * 18 16 15 48 48 H 0.96693 * 114.00020 * 180.02562 * 19 18 16 49 49 H 0.96995 * 119.99576 * 25.00099 * 20 16 15 50 50 H 0.97005 * 119.99422 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3670 1.9949 1.1370 5 6 2.8121 3.2358 1.1865 6 6 3.1801 3.8387 2.5178 7 6 1.9893 4.6267 3.0673 8 6 4.3746 4.7778 2.3395 9 6 2.9415 3.9945 0.0368 10 6 2.6089 3.4356 -1.1844 11 6 2.1392 2.1167 -1.2046 12 6 1.7643 1.4718 -2.4810 13 8 1.2578 0.3667 -2.4779 14 7 1.9840 2.1091 -3.6480 15 6 1.6120 1.4703 -4.9128 16 6 1.9661 2.3984 -6.0764 17 1 1.3575 3.3009 -6.0193 18 6 1.6935 1.6825 -7.4009 19 8 2.4017 0.4416 -7.4262 20 7 3.3838 2.7596 -5.9992 21 6 3.8256 3.9240 -6.5684 22 1 3.1290 4.5763 -7.0739 23 6 5.1689 4.2664 -6.4948 24 7 6.0177 3.4716 -5.8783 25 14 5.7716 5.8552 -7.2706 26 1 5.0729 7.0073 -6.6462 27 1 7.2349 5.9872 -7.0552 28 1 5.4861 5.8339 -8.7278 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4435 3.0442 3.2161 35 1 1.7259 5.4212 2.3691 36 1 1.1383 3.9577 3.1943 37 1 2.2556 5.0632 4.0300 38 1 4.6405 5.2142 3.3024 39 1 5.2229 4.2164 1.9480 40 1 4.1112 5.5722 1.6413 41 1 3.3029 5.0108 0.0916 42 1 2.7046 4.0035 -2.0979 43 1 2.3884 2.9907 -3.6505 44 1 2.1553 0.5313 -5.0192 45 1 0.5402 1.2725 -4.9185 46 1 0.6246 1.4928 -7.4982 47 1 2.0283 2.3088 -8.2280 48 1 2.2752 -0.0669 -8.2388 49 1 4.0093 2.1739 -5.5449 50 1 6.9563 3.7112 -5.8265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700799862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:18 Heat of formation + Delta-G solvation = -53.471661 kcal Electronic energy + Delta-G solvation = -29570.866489 eV Core-core repulsion = 25597.927145 eV Total energy + Delta-G solvation = -3972.939345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85201 -39.02416 -37.19243 -35.92850 -34.99902 -34.00154 -33.05436 -32.27523 -31.29169 -29.51994 -28.27977 -27.38966 -25.78966 -24.32321 -24.11532 -23.60570 -21.92997 -20.70463 -20.15383 -19.78070 -17.86631 -17.29251 -16.89244 -16.62715 -15.86441 -15.46398 -15.25169 -14.84628 -14.60946 -14.49051 -14.14284 -14.11586 -13.65424 -13.58302 -13.44912 -13.24928 -13.17249 -13.02209 -12.80944 -12.63251 -12.21049 -12.03550 -11.97891 -11.68565 -11.47730 -11.33952 -11.19075 -11.09661 -10.93842 -10.87777 -10.73963 -10.61369 -10.17175 -9.83166 -9.80910 -9.68250 -9.41784 -9.20076 -9.01867 -8.89438 -8.51862 -7.08752 -5.85668 -3.16581 0.72986 1.25012 3.06725 3.35193 3.40636 3.42303 3.48889 3.87956 4.01697 4.48303 4.50006 4.70681 4.84939 4.88326 4.89872 4.93874 5.04380 5.14441 5.36297 5.37224 5.43500 5.46308 5.49234 5.51854 5.54489 5.60126 5.61431 5.65979 5.75547 5.86186 5.88907 5.96078 5.99024 6.01421 6.02187 6.07967 6.08295 6.19278 6.29811 6.42141 6.45905 6.47439 6.66939 6.71657 6.89798 7.57471 7.86529 7.98905 8.17930 8.31008 8.52787 9.43265 9.98310 10.34924 11.35543 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.003603 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.883520 B = 7769.105861 C =10162.365272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C 0.193 3.807 4 N -0.490 5.490 5 C 0.157 3.843 6 C -0.048 4.048 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.184 4.184 10 C -0.032 4.032 11 C -0.188 4.188 12 C 0.558 3.442 13 O -0.537 6.537 14 N -0.707 5.707 15 C 0.120 3.880 16 C 0.165 3.835 17 H 0.065 0.935 18 C 0.060 3.940 19 O -0.560 6.560 20 N -0.713 5.713 21 C -0.251 4.251 22 H 0.070 0.930 23 C -0.006 4.006 24 N -0.925 5.925 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.407 0.593 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.049 0.951 48 H 0.364 0.636 49 H 0.389 0.611 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 0.158 12.882 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.117 4.117 3 C 0.055 3.945 4 N -0.199 5.199 5 C 0.019 3.981 6 C -0.067 4.067 7 C -0.198 4.198 8 C -0.207 4.207 9 C -0.204 4.204 10 C -0.058 4.058 11 C -0.193 4.193 12 C 0.344 3.656 13 O -0.417 6.417 14 N -0.358 5.358 15 C -0.004 4.004 16 C 0.054 3.946 17 H 0.083 0.917 18 C -0.022 4.022 19 O -0.363 6.363 20 N -0.355 5.355 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.571 5.571 25 Si 0.736 3.264 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.244 0.756 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.209 0.791 49 H 0.223 0.777 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.802 -0.708 14.145 17.224 hybrid contribution 0.844 1.601 -1.953 2.662 sum -8.958 0.892 12.192 15.156 Atomic orbital electron populations 1.21539 0.93963 1.01792 1.01385 1.20758 0.96918 0.89881 1.04160 1.21448 0.90255 0.96397 0.86446 1.67413 1.12689 1.11124 1.28665 1.21389 0.91962 0.89445 0.95282 1.20085 0.96138 0.98014 0.92476 1.21796 0.97287 0.99847 1.00884 1.21943 0.97197 0.99259 1.02280 1.21897 1.03918 1.02063 0.92511 1.21885 0.91443 0.93582 0.98939 1.20818 1.07130 0.96001 0.95355 1.17950 0.78942 0.85279 0.83394 1.90685 1.44416 1.19399 1.87197 1.45915 1.62328 1.22043 1.05494 1.21568 0.99395 0.97428 0.82056 1.20599 0.89137 0.94391 0.90498 0.91711 1.23025 0.92655 0.85644 1.00860 1.86567 1.73682 1.33467 1.42605 1.42376 1.01959 1.24425 1.66761 1.19167 0.92355 0.97290 1.29395 0.91249 1.24743 0.96067 0.98567 1.00905 1.69672 1.02986 1.37494 1.46997 0.86315 0.77748 0.83232 0.79084 1.21237 1.21683 1.21304 0.91937 0.92320 0.93746 0.87289 0.91173 0.89163 0.92401 0.92301 0.91849 0.91810 0.92120 0.91928 0.84162 0.83935 0.75575 0.90391 0.91942 0.95511 0.93319 0.79130 0.77655 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.46 37.16 0.35 -1.35 16 2 C -0.08 -1.14 5.46 -27.89 -0.15 -1.30 16 3 C 0.19 2.98 6.07 -82.17 -0.50 2.48 16 4 N -0.49 -7.21 10.17 -5.42 -0.06 -7.26 16 5 C 0.16 2.01 5.79 -82.51 -0.48 1.54 16 6 C -0.05 -0.47 3.23 -91.77 -0.30 -0.76 16 7 C -0.14 -1.17 9.17 37.16 0.34 -0.83 16 8 C -0.15 -1.24 8.62 37.16 0.32 -0.92 16 9 C -0.18 -2.30 9.16 -39.50 -0.36 -2.66 16 10 C -0.03 -0.45 9.63 -38.87 -0.37 -0.83 16 11 C -0.19 -2.95 5.89 -104.82 -0.62 -3.57 16 12 C 0.56 9.56 7.69 -12.33 -0.09 9.46 16 13 O -0.54 -9.92 11.78 5.32 0.06 -9.86 16 14 N -0.71 -11.98 5.34 -61.26 -0.33 -12.30 16 15 C 0.12 2.08 5.12 -4.05 -0.02 2.06 16 16 C 0.16 3.05 2.84 -67.93 -0.19 2.85 16 17 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 18 C 0.06 1.01 6.86 37.16 0.25 1.26 16 19 O -0.56 -9.81 12.64 -35.23 -0.45 -10.26 16 20 N -0.71 -16.60 4.51 -53.42 -0.24 -16.84 16 21 C -0.25 -6.44 9.93 -15.06 -0.15 -6.59 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.92 -26.77 13.06 55.49 0.72 -26.04 16 25 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.06 0.92 6.82 -51.93 -0.35 0.56 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.11 1.74 5.82 -51.93 -0.30 1.44 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.49 6.48 -51.93 -0.34 0.15 16 41 H 0.14 1.42 6.30 -52.48 -0.33 1.09 16 42 H 0.14 1.88 6.56 -52.49 -0.34 1.53 16 43 H 0.41 6.91 6.28 -40.82 -0.26 6.65 16 44 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 48 H 0.36 4.58 9.12 45.56 0.42 4.99 16 49 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 50 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -31.14 403.28 -8.54 -39.69 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -7.25 Total: 19.97 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.07 Total: 0.59 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.10 Total: -62.44 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.38 Total: -20.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.14 -8.54 -39.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700799862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.785 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds