Wall clock time and date at job start Tue Mar 31 2020 19:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47182 * 2 1 4 4 N 1.31700 * 119.71657 * 96.23467 * 3 2 1 5 5 C 1.31921 * 121.88105 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.45827 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46941 * 265.00107 * 6 5 4 8 8 C 1.52996 * 109.46948 * 145.00389 * 6 5 4 9 9 C 1.38356 * 121.07928 * 0.28240 * 5 4 3 10 10 C 1.38353 * 119.30327 * 359.42574 * 9 5 4 11 11 C 1.39523 * 119.72093 * 276.21606 * 3 2 1 12 12 C 1.47841 * 120.55682 * 359.97433 * 11 3 2 13 13 O 1.21558 * 119.99882 * 5.96170 * 12 11 3 14 14 N 1.34774 * 120.00126 * 185.95411 * 12 11 3 15 15 C 1.46497 * 120.00136 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47186 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.46696 * 294.99846 * 16 15 14 18 18 C 1.53002 * 109.47081 * 175.00131 * 16 15 14 19 19 O 1.42898 * 109.47180 * 304.99372 * 18 16 15 20 20 N 1.46502 * 109.47559 * 54.99721 * 16 15 14 21 21 C 1.36936 * 119.99913 * 205.00266 * 20 16 15 22 22 H 1.07998 * 120.00511 * 0.02562 * 21 20 16 23 23 C 1.38816 * 119.99684 * 179.97438 * 21 20 16 24 24 N 1.31621 * 119.99762 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47502 * 59.99935 * 25 23 21 27 27 H 1.48501 * 109.47007 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47116 * 299.99979 * 25 23 21 29 29 H 1.09000 * 109.47314 * 59.99501 * 1 2 3 30 30 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46624 * 299.99387 * 1 2 3 32 32 H 1.09002 * 109.47035 * 240.00798 * 2 1 3 33 33 H 1.09000 * 109.47314 * 120.00499 * 2 1 3 34 34 H 1.09000 * 109.47254 * 25.00330 * 6 5 4 35 35 H 1.09002 * 109.47844 * 300.00222 * 7 6 5 36 36 H 1.08999 * 109.47171 * 60.00426 * 7 6 5 37 37 H 1.09003 * 109.47261 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46986 * 179.97438 * 8 6 5 39 39 H 1.08997 * 109.47307 * 299.99682 * 8 6 5 40 40 H 1.09000 * 109.47191 * 59.99902 * 8 6 5 41 41 H 1.08003 * 120.34436 * 179.72476 * 9 5 4 42 42 H 1.07996 * 120.85820 * 180.28653 * 10 9 5 43 43 H 0.96996 * 119.99617 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.46891 * 300.00101 * 15 14 12 45 45 H 1.08997 * 109.46938 * 59.99925 * 15 14 12 46 46 H 1.08997 * 109.47417 * 64.99528 * 18 16 15 47 47 H 1.09010 * 109.46885 * 184.99828 * 18 16 15 48 48 H 0.96693 * 114.00020 * 180.02562 * 19 18 16 49 49 H 0.96995 * 119.99576 * 25.00099 * 20 16 15 50 50 H 0.97005 * 119.99422 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3670 1.9949 1.1370 5 6 2.8121 3.2358 1.1865 6 6 3.1801 3.8387 2.5178 7 6 1.9893 4.6267 3.0673 8 6 4.3746 4.7778 2.3395 9 6 2.9415 3.9945 0.0368 10 6 2.6089 3.4356 -1.1844 11 6 2.1392 2.1167 -1.2046 12 6 1.7643 1.4718 -2.4810 13 8 1.2578 0.3667 -2.4779 14 7 1.9840 2.1091 -3.6480 15 6 1.6120 1.4703 -4.9128 16 6 1.9661 2.3984 -6.0764 17 1 1.3575 3.3009 -6.0193 18 6 1.6935 1.6825 -7.4009 19 8 2.4017 0.4416 -7.4262 20 7 3.3838 2.7596 -5.9992 21 6 3.8256 3.9240 -6.5684 22 1 3.1290 4.5763 -7.0739 23 6 5.1689 4.2664 -6.4948 24 7 6.0177 3.4716 -5.8783 25 14 5.7716 5.8552 -7.2706 26 1 5.0729 7.0073 -6.6462 27 1 7.2349 5.9872 -7.0552 28 1 5.4861 5.8339 -8.7278 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4435 3.0442 3.2161 35 1 1.7259 5.4212 2.3691 36 1 1.1383 3.9577 3.1943 37 1 2.2556 5.0632 4.0300 38 1 4.6405 5.2142 3.3024 39 1 5.2229 4.2164 1.9480 40 1 4.1112 5.5722 1.6413 41 1 3.3029 5.0108 0.0916 42 1 2.7046 4.0035 -2.0979 43 1 2.3884 2.9907 -3.6505 44 1 2.1553 0.5313 -5.0192 45 1 0.5402 1.2725 -4.9185 46 1 0.6246 1.4928 -7.4982 47 1 2.0283 2.3088 -8.2280 48 1 2.2752 -0.0669 -8.2388 49 1 4.0093 2.1739 -5.5449 50 1 6.9563 3.7112 -5.8265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700799862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:17 Heat of formation + Delta-G solvation = -75.589843 kcal Electronic energy + Delta-G solvation = -29571.825606 eV Core-core repulsion = 25597.927145 eV Total energy + Delta-G solvation = -3973.898461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99087 -40.29955 -38.62898 -36.88945 -36.38487 -35.48431 -34.40204 -33.43496 -32.90455 -30.70494 -29.87828 -28.04708 -27.05105 -25.75185 -25.27594 -25.16863 -22.95881 -21.91340 -21.62127 -20.85575 -19.49686 -18.70233 -18.18219 -17.98836 -17.00277 -16.81225 -16.58572 -16.24734 -15.95569 -15.59586 -15.44901 -15.19944 -15.05959 -14.90332 -14.70155 -14.57940 -14.37226 -14.15496 -13.89016 -13.71585 -13.59973 -13.05305 -13.03271 -12.83334 -12.74330 -12.67408 -12.62759 -12.28772 -12.13025 -12.06151 -11.91228 -11.89500 -11.85189 -11.72406 -11.00292 -10.93379 -10.85370 -10.71707 -10.40196 -10.11406 -9.77904 -9.00621 -7.89419 -5.19010 -0.39758 0.15530 1.50517 1.52140 1.58198 1.81053 2.17541 2.58145 2.73257 3.02726 3.42636 3.53335 3.61701 3.63469 3.70377 3.90586 3.95456 4.02267 4.12165 4.16334 4.26475 4.37066 4.41399 4.44645 4.50044 4.56688 4.59189 4.63456 4.79935 4.82714 4.86046 4.86842 4.91159 4.98137 5.00101 5.02105 5.07690 5.19277 5.22390 5.25624 5.32734 5.36741 5.43582 5.52555 5.56574 5.61006 6.28633 6.51917 6.88013 7.06994 7.17793 7.37180 8.09247 8.34893 9.32916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.003603 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.883520 B = 7769.105861 C =10162.365272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C 0.182 3.818 4 N -0.503 5.503 5 C 0.156 3.844 6 C -0.047 4.047 7 C -0.136 4.136 8 C -0.147 4.147 9 C -0.181 4.181 10 C -0.038 4.038 11 C -0.208 4.208 12 C 0.556 3.444 13 O -0.555 6.555 14 N -0.706 5.706 15 C 0.132 3.868 16 C 0.161 3.839 17 H 0.080 0.920 18 C 0.064 3.936 19 O -0.584 6.584 20 N -0.723 5.723 21 C -0.239 4.239 22 H 0.081 0.919 23 C -0.068 4.068 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.273 1.273 27 H -0.303 1.303 28 H -0.283 1.283 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.168 0.832 42 H 0.148 0.852 43 H 0.407 0.593 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.036 0.964 48 H 0.385 0.615 49 H 0.372 0.628 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 1.777 13.508 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 C 0.043 3.957 4 N -0.213 5.213 5 C 0.018 3.982 6 C -0.066 4.066 7 C -0.194 4.194 8 C -0.204 4.204 9 C -0.200 4.200 10 C -0.064 4.064 11 C -0.213 4.213 12 C 0.344 3.656 13 O -0.436 6.436 14 N -0.357 5.357 15 C 0.007 3.993 16 C 0.051 3.949 17 H 0.097 0.903 18 C -0.016 4.016 19 O -0.390 6.390 20 N -0.363 5.363 21 C -0.370 4.370 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.199 1.199 27 H -0.230 1.230 28 H -0.210 1.210 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.244 0.756 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.233 0.767 49 H 0.204 0.796 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.002 0.911 14.738 18.415 hybrid contribution 1.122 1.055 -2.107 2.609 sum -9.881 1.966 12.632 16.157 Atomic orbital electron populations 1.21461 0.93054 1.02512 1.00785 1.20707 0.97676 0.89568 1.03549 1.21595 0.90557 0.96836 0.86695 1.67474 1.13355 1.12175 1.28248 1.22011 0.90473 0.88848 0.96911 1.20198 0.97372 0.98346 0.90666 1.21778 0.96097 0.99474 1.02026 1.21946 0.95951 0.98914 1.03626 1.22202 1.02978 1.03182 0.91678 1.22035 0.91294 0.93073 0.99952 1.20765 1.08915 0.96946 0.94708 1.18204 0.78493 0.85072 0.83878 1.90670 1.45276 1.20135 1.87524 1.45885 1.62414 1.21968 1.05444 1.21407 0.99971 0.96010 0.81868 1.20859 0.86685 0.95453 0.91869 0.90252 1.22875 0.94771 0.85210 0.98781 1.86522 1.74251 1.33857 1.44415 1.42479 1.03629 1.23597 1.66555 1.19575 0.92416 0.97601 1.27457 0.90068 1.25454 0.96561 1.01580 1.02435 1.69844 1.02698 1.39488 1.49539 0.85318 0.76399 0.80318 0.78284 1.19935 1.22990 1.20978 0.93684 0.90951 0.92999 0.89244 0.90250 0.89440 0.91966 0.93447 0.89700 0.89789 0.93245 0.91172 0.81486 0.83431 0.75600 0.92909 0.90071 0.91589 0.94552 0.76687 0.79634 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.46 71.98 0.68 -2.48 16 2 C -0.08 -2.26 5.46 29.85 0.16 -2.10 16 3 C 0.18 5.65 6.07 42.89 0.26 5.92 16 4 N -0.50 -14.62 10.17 -171.05 -1.74 -16.36 16 5 C 0.16 3.81 5.79 42.57 0.25 4.06 16 6 C -0.05 -0.82 3.23 -11.54 -0.04 -0.86 16 7 C -0.14 -1.95 9.17 71.98 0.66 -1.29 16 8 C -0.15 -2.08 8.62 71.98 0.62 -1.46 16 9 C -0.18 -4.29 9.16 22.33 0.20 -4.08 16 10 C -0.04 -1.04 9.63 22.73 0.22 -0.82 16 11 C -0.21 -6.63 5.89 -19.99 -0.12 -6.75 16 12 C 0.56 19.44 7.69 86.79 0.67 20.11 16 13 O -0.55 -21.02 11.78 -3.90 -0.05 -21.07 16 14 N -0.71 -24.13 5.34 -465.99 -2.49 -26.62 16 15 C 0.13 4.52 5.12 86.38 0.44 4.96 16 16 C 0.16 5.75 2.84 44.99 0.13 5.88 16 17 H 0.08 2.63 8.08 -2.38 -0.02 2.61 16 18 C 0.06 2.06 6.86 71.98 0.49 2.55 16 19 O -0.58 -19.88 12.64 -148.98 -1.88 -21.77 16 20 N -0.72 -33.57 4.51 -322.94 -1.46 -35.02 16 21 C -0.24 -12.11 9.93 84.03 0.83 -11.27 16 22 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 24 N -0.97 -57.02 13.06 21.65 0.28 -56.74 16 25 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 29 H 0.04 1.33 6.82 -2.39 -0.02 1.32 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 2.98 5.82 -2.39 -0.01 2.96 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.89 6.48 -2.39 -0.02 0.87 16 41 H 0.17 2.97 6.30 -2.91 -0.02 2.95 16 42 H 0.15 3.85 6.56 -2.91 -0.02 3.83 16 43 H 0.41 13.90 6.28 -92.71 -0.58 13.32 16 44 H 0.05 2.10 7.39 -2.39 -0.02 2.08 16 45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.39 9.16 9.12 -74.06 -0.68 8.48 16 49 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 50 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -67.60 403.28 -0.38 -67.98 By element: Atomic # 1 Polarization: 55.69 SS G_CDS: -1.01 Total: 54.68 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.93 Total: 9.18 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.40 Total: -134.74 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.93 Total: -42.83 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.60 -0.38 -67.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700799862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.608 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds